RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 PIGYQ3MUY2 71 aa14.19□□□□□ -0.14
USP4-201ENST00000265560 ZNF260Q3ZCT1 412 aa14.19□□□□□ -0.14
USP4-201ENST00000265560 SLC25A26Q70HW3 274 aa14.19□□□□□ -0.14
USP4-201ENST00000265560 OR4C16Q8NGL9 310 aa14.19□□□□□ -0.14
USP4-201ENST00000265560 S100PBPQ96BU1 408 aa14.19□□□□□ -0.14
USP4-201ENST00000265560 CACNA1DQ01668 2161 aa14.18□□□□□ -0.14
USP4-201ENST00000265560 ARPC4-TTLL3A0A0A6YYG9 625 aa14.18□□□□□ -0.14
USP4-201ENST00000265560 F8VVB4 439 aa14.18□□□□□ -0.14
USP4-201ENST00000265560 F8VWA3 439 aa14.18□□□□□ -0.14
USP4-201ENST00000265560 COX5BP10606 129 aa14.18□□□□□ -0.14
USP4-201ENST00000265560 COX5AP20674 150 aa14.18□□□□□ -0.14
USP4-201ENST00000265560 HOXD11P31277 338 aaPredicted RBP14.18□□□□□ -0.14
USP4-201ENST00000265560 NKX2-5P52952 324 aaPredicted RBP14.18□□□□□ -0.14
USP4-201ENST00000265560 HOXA4Q00056 320 aaPredicted RBP14.18□□□□□ -0.14
USP4-201ENST00000265560 LY6DQ14210 128 aa14.18□□□□□ -0.14
USP4-201ENST00000265560 AGAP6Q5VW22 663 aa14.18□□□□□ -0.14
USP4-201ENST00000265560 TMEM42Q69YG0 159 aa14.18□□□□□ -0.14
USP4-201ENST00000265560 BHLHA15Q7RTS1 189 aaPredicted RBP14.18□□□□□ -0.14
USP4-201ENST00000265560 HPSE2Q8WWQ2 592 aa14.18□□□□□ -0.14
USP4-201ENST00000265560 TINAGL1Q9GZM7 467 aaPredicted RBP14.18□□□□□ -0.14
USP4-201ENST00000265560 TP63Q9H3D4 680 aaPredicted RBP14.18□□□□□ -0.14
USP4-201ENST00000265560 ZNF230Q9UIE0 474 aaPredicted RBP14.18□□□□□ -0.14
USP4-201ENST00000265560 SLC7A11Q9UPY5 501 aa14.18□□□□□ -0.14
USP4-201ENST00000265560 HIVEP3Q5T1R4 2406 aa14.18□□□□□ -0.14
USP4-201ENST00000265560 KIAA2026Q5HYC2 2103 aa14.18□□□□□ -0.14
USP4-201ENST00000265560 NAT2P11245 290 aa14.18□□□□□ -0.14
USP4-201ENST00000265560 BLVRBP30043 206 aaPredicted RBP14.18□□□□□ -0.14
USP4-201ENST00000265560 HAAOP46952 286 aa14.18□□□□□ -0.14
USP4-201ENST00000265560 ZNF83P51522 516 aa14.18□□□□□ -0.14
USP4-201ENST00000265560 ZP1P60852 638 aa14.18□□□□□ -0.14
USP4-201ENST00000265560 CBX3Q13185 183 aa14.18□□□□□ -0.14
USP4-201ENST00000265560 SNTB1Q13884 538 aaKnown RBP14.18□□□□□ -0.14
USP4-201ENST00000265560 CNN3Q15417 329 aaKnown RBP14.18□□□□□ -0.14
USP4-201ENST00000265560 C6orf201Q7Z4U5 140 aa14.18□□□□□ -0.14
USP4-201ENST00000265560 TRAPPC6BQ86SZ2 158 aa14.18□□□□□ -0.14
USP4-201ENST00000265560 OR1J1Q8NGS3 322 aa14.18□□□□□ -0.14
USP4-201ENST00000265560 OR51F2Q8NH61 342 aa14.18□□□□□ -0.14
USP4-201ENST00000265560 GPX8Q8TED1 209 aa14.18□□□□□ -0.14
USP4-201ENST00000265560 DYRK2Q92630 601 aa14.18□□□□□ -0.14
USP4-201ENST00000265560 RAB3CQ96E17 227 aa14.18□□□□□ -0.14
USP4-201ENST00000265560 DPAGT1Q9H3H5 408 aa14.18□□□□□ -0.14
USP4-201ENST00000265560 CECR9P0C854 216 aa14.17□□□□□ -0.14
USP4-201ENST00000265560 RAB6AP20340 208 aa14.17□□□□□ -0.14
USP4-201ENST00000265560 SLC25A40Q8TBP6 338 aa14.17□□□□□ -0.14
USP4-201ENST00000265560 DMRTB1Q96MA1 342 aa14.17□□□□□ -0.14
USP4-201ENST00000265560 ZNF488Q96MN9 340 aa14.17□□□□□ -0.14
USP4-201ENST00000265560 A0A0G2JNJ9 132 aa14.17□□□□□ -0.14
USP4-201ENST00000265560 SMPD2O60906 423 aa14.17□□□□□ -0.14
USP4-201ENST00000265560 CSTBP04080 98 aaKnown RBP14.17□□□□□ -0.14
USP4-201ENST00000265560 FABP6P51161 128 aa14.17□□□□□ -0.14
USP4-201ENST00000265560 OR51S1Q8NGJ8 323 aa14.17□□□□□ -0.14
USP4-201ENST00000265560 ZC3HAV1LQ96H79 300 aaKnown RBP14.17□□□□□ -0.14
USP4-201ENST00000265560 MARVELD1Q9BSK0 173 aa14.17□□□□□ -0.14
USP4-201ENST00000265560 CST11Q9H112 138 aa14.17□□□□□ -0.14
USP4-201ENST00000265560 IL36RNQ9UBH0 155 aa14.17□□□□□ -0.14
USP4-201ENST00000265560 Q9UFV3 132 aa14.17□□□□□ -0.14
USP4-201ENST00000265560 ATPIF1Q9UII2 106 aa14.17□□□□□ -0.14
USP4-201ENST00000265560 IGSF10Q6WRI0 2623 aa14.17□□□□□ -0.14
USP4-201ENST00000265560 ZNF732B4DXR9 585 aa14.17□□□□□ -0.14
USP4-201ENST00000265560 PPP1CBP62140 327 aa14.17□□□□□ -0.14
USP4-201ENST00000265560 LIX1LQ8IVB5 337 aa14.17□□□□□ -0.14
USP4-201ENST00000265560 ZNF611Q8N823 705 aa14.17□□□□□ -0.14
USP4-201ENST00000265560 SPSB1Q96BD6 273 aa14.17□□□□□ -0.14
USP4-201ENST00000265560 SLX1AQ9BQ83 275 aa14.17□□□□□ -0.14
USP4-201ENST00000265560 HDHD3Q9BSH5 251 aaPredicted RBP14.17□□□□□ -0.14
USP4-201ENST00000265560 SHANK1Q9Y566 2161 aa14.16□□□□□ -0.14
USP4-201ENST00000265560 FAM221AA4D161 298 aa14.16□□□□□ -0.14
USP4-201ENST00000265560 DUSP1P28562 367 aa14.16□□□□□ -0.14
USP4-201ENST00000265560 MPV17P39210 176 aa14.16□□□□□ -0.14
USP4-201ENST00000265560 UCP2P55851 309 aa14.16□□□□□ -0.14
USP4-201ENST00000265560 FBXL14Q8N1E6 418 aa14.16□□□□□ -0.14
USP4-201ENST00000265560 AQP3Q92482 292 aa14.16□□□□□ -0.14
USP4-201ENST00000265560 SLAMF9Q96A28 289 aa14.16□□□□□ -0.14
USP4-201ENST00000265560 C10orf35Q96D05 121 aa14.16□□□□□ -0.14
USP4-201ENST00000265560 ITPKCQ96DU7 683 aa14.16□□□□□ -0.14
USP4-201ENST00000265560 DHRS7CA6NNS2 312 aa14.16□□□□□ -0.14
USP4-201ENST00000265560 ATXN7O15265 892 aaPredicted RBP14.16□□□□□ -0.14
USP4-201ENST00000265560 CCNKO75909 580 aa14.16□□□□□ -0.14
USP4-201ENST00000265560 RPS27AP62979 156 aaKnown RBP14.16□□□□□ -0.14
USP4-201ENST00000265560 BEND4Q6ZU67 534 aa14.16□□□□□ -0.14
USP4-201ENST00000265560 CHAC2Q8WUX2 184 aa14.16□□□□□ -0.14
USP4-201ENST00000265560 EIF3KQ9UBQ5 218 aaKnown RBP14.16□□□□□ -0.14
USP4-201ENST00000265560 ZNF391Q9UJN7 358 aa14.16□□□□□ -0.14
USP4-201ENST00000265560 GEMIN2O14893 280 aaKnown RBP14.15□□□□□ -0.14
USP4-201ENST00000265560 SSX5O60225 188 aa14.15□□□□□ -0.14
USP4-201ENST00000265560 LPLP06858 475 aa14.15□□□□□ -0.14
USP4-201ENST00000265560 PRKACBP22694 351 aa14.15□□□□□ -0.14
USP4-201ENST00000265560 CD83Q01151 205 aa14.15□□□□□ -0.14
USP4-201ENST00000265560 PDZK1IP1Q13113 114 aa14.15□□□□□ -0.14
USP4-201ENST00000265560 ZNF782Q6ZMW2 699 aaPredicted RBP14.15□□□□□ -0.14
USP4-201ENST00000265560 AKAP14Q86UN6 197 aa14.15□□□□□ -0.14
USP4-201ENST00000265560 EPG5Q9HCE0 2579 aa14.15□□□□□ -0.14
USP4-201ENST00000265560 A0A0A6YYJ9 748 aa14.15□□□□□ -0.14
USP4-201ENST00000265560 OR5H1A6NKK0 313 aa14.15□□□□□ -0.14
USP4-201ENST00000265560 ARPC1BO15143 372 aaKnown RBP14.15□□□□□ -0.14
USP4-201ENST00000265560 FUT6P51993 359 aa14.15□□□□□ -0.14
USP4-201ENST00000265560 ATP1B3P54709 279 aa14.15□□□□□ -0.14
USP4-201ENST00000265560 ARFRP1Q13795 201 aa14.15□□□□□ -0.14
USP4-201ENST00000265560 ZCCHC14Q8WYQ9 949 aaKnown RBP14.15□□□□□ -0.14
USP4-201ENST00000265560 PTX4Q96A99 478 aa14.15□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms