RNA–Protein interactions for RNA: ENST00000225726.9

CCDC47-201, Transcript of coiled-coil domain containing 47, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC47, Length 3,466 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-201ENST00000225726 METTL9Q9H1A3 318 aa12.84□□□□□ -0.35
CCDC47-201ENST00000225726 RAXQ9Y2V3 346 aa12.84□□□□□ -0.35
CCDC47-201ENST00000225726 CST4P01036 141 aa12.84□□□□□ -0.35
CCDC47-201ENST00000225726 IL2RAP01589 272 aa12.84□□□□□ -0.35
CCDC47-201ENST00000225726 AKAIN1P0CW23 69 aa12.84□□□□□ -0.35
CCDC47-201ENST00000225726 TMEM225BP0DP42 221 aa12.84□□□□□ -0.35
CCDC47-201ENST00000225726 GTF2F2P13984 249 aa12.84□□□□□ -0.35
CCDC47-201ENST00000225726 RAG2P55895 527 aa12.84□□□□□ -0.35
CCDC47-201ENST00000225726 P2RY6Q15077 328 aa12.84□□□□□ -0.35
CCDC47-201ENST00000225726 BEND4Q6ZU67 534 aa12.84□□□□□ -0.35
CCDC47-201ENST00000225726 CXorf67Q86X51 503 aaPredicted RBP12.84□□□□□ -0.35
CCDC47-201ENST00000225726 FAM89BQ8N5H3 189 aa12.84□□□□□ -0.35
CCDC47-201ENST00000225726 TMEM229BQ8NBD8 167 aa12.84□□□□□ -0.35
CCDC47-201ENST00000225726 TM2D1Q9BX74 207 aa12.84□□□□□ -0.35
CCDC47-201ENST00000225726 ZMAT3Q9HA38 289 aaKnown RBP12.84□□□□□ -0.35
CCDC47-201ENST00000225726 ZNF71Q9NQZ8 489 aaPredicted RBP12.84□□□□□ -0.35
CCDC47-201ENST00000225726 ZMAT5Q9UDW3 170 aaKnown RBP12.84□□□□□ -0.35
CCDC47-201ENST00000225726 ZNF850A8MQ14 1090 aa12.83□□□□□ -0.35
CCDC47-201ENST00000225726 ERVH48-1M5A8F1 160 aa12.83□□□□□ -0.35
CCDC47-201ENST00000225726 DHFRP00374 187 aa12.83□□□□□ -0.35
CCDC47-201ENST00000225726 CBR1P16152 277 aa12.83□□□□□ -0.35
CCDC47-201ENST00000225726 MGMTP16455 207 aa12.83□□□□□ -0.35
CCDC47-201ENST00000225726 SFRP4Q6FHJ7 346 aaPredicted RBP12.83□□□□□ -0.35
CCDC47-201ENST00000225726 ASCL4Q6XD76 172 aa12.83□□□□□ -0.35
CCDC47-201ENST00000225726 WDR31Q8NA23 367 aa12.83□□□□□ -0.35
CCDC47-201ENST00000225726 SELENOIQ9C0D9 397 aa12.83□□□□□ -0.35
CCDC47-201ENST00000225726 CDH20Q9HBT6 801 aa12.83□□□□□ -0.35
CCDC47-201ENST00000225726 ELF5Q9UKW6 265 aaPredicted RBP12.83□□□□□ -0.35
CCDC47-201ENST00000225726 TRAV6A0A075B6T7 132 aa12.83□□□□□ -0.36
CCDC47-201ENST00000225726 A0A1W2PR80 420 aa12.83□□□□□ -0.36
CCDC47-201ENST00000225726 GSTP1P09211 210 aaKnown RBP12.83□□□□□ -0.36
CCDC47-201ENST00000225726 SERPINA2P20848 420 aa12.83□□□□□ -0.36
CCDC47-201ENST00000225726 TSC22D1Q15714 1073 aa12.83□□□□□ -0.36
CCDC47-201ENST00000225726 FJX1Q86VR8 437 aa12.83□□□□□ -0.36
CCDC47-201ENST00000225726 OR51T1Q8NGJ9 327 aa12.83□□□□□ -0.36
CCDC47-201ENST00000225726 WBP1Q96G27 269 aa12.83□□□□□ -0.36
CCDC47-201ENST00000225726 ACTR6Q9GZN1 396 aa12.83□□□□□ -0.36
CCDC47-201ENST00000225726 ELL3Q9HB65 397 aaPredicted RBP12.83□□□□□ -0.36
CCDC47-201ENST00000225726 MCUBQ9NWR8 336 aa12.83□□□□□ -0.36
CCDC47-201ENST00000225726 EIF3KQ9UBQ5 218 aaKnown RBP12.83□□□□□ -0.36
CCDC47-201ENST00000225726 GPR160Q9UJ42 338 aa12.83□□□□□ -0.36
CCDC47-201ENST00000225726 APC2O95996 2303 aa12.83□□□□□ -0.36
CCDC47-201ENST00000225726 CELA3BP08861 270 aa12.83□□□□□ -0.36
CCDC47-201ENST00000225726 H2AFB2P0C5Z0 115 aa12.83□□□□□ -0.36
CCDC47-201ENST00000225726 GNB3P16520 340 aa12.83□□□□□ -0.36
CCDC47-201ENST00000225726 PSMB1P20618 241 aaKnown RBP12.83□□□□□ -0.36
CCDC47-201ENST00000225726 IDH3GP51553 393 aaPredicted RBP12.83□□□□□ -0.36
CCDC47-201ENST00000225726 TAS2R19P59542 299 aa12.83□□□□□ -0.36
CCDC47-201ENST00000225726 CD83Q01151 205 aa12.83□□□□□ -0.36
CCDC47-201ENST00000225726 MYPOPQ86VE0 399 aaPredicted RBP12.83□□□□□ -0.36
CCDC47-201ENST00000225726 FTMTQ8N4E7 242 aa12.83□□□□□ -0.36
CCDC47-201ENST00000225726 CISD2Q8N5K1 135 aaKnown RBP12.83□□□□□ -0.36
CCDC47-201ENST00000225726 OR4C16Q8NGL9 310 aa12.83□□□□□ -0.36
CCDC47-201ENST00000225726 OR10K1Q8NGX5 313 aa12.83□□□□□ -0.36
CCDC47-201ENST00000225726 RAB3CQ96E17 227 aa12.83□□□□□ -0.36
CCDC47-201ENST00000225726 PAPOLGQ9BWT3 736 aaKnown RBP12.83□□□□□ -0.36
CCDC47-201ENST00000225726 OBP2BQ9NPH6 170 aa12.83□□□□□ -0.36
CCDC47-201ENST00000225726 ZNF221Q9UK13 617 aa12.83□□□□□ -0.36
CCDC47-201ENST00000225726 SOCS1O15524 211 aa12.82□□□□□ -0.36
CCDC47-201ENST00000225726 HIST1H1DP16402 221 aaKnown RBP12.82□□□□□ -0.36
CCDC47-201ENST00000225726 PRDX4Q13162 271 aa12.82□□□□□ -0.36
CCDC47-201ENST00000225726 TRAPPC6BQ86SZ2 158 aa12.82□□□□□ -0.36
CCDC47-201ENST00000225726 OR56B4Q8NH76 319 aa12.82□□□□□ -0.36
CCDC47-201ENST00000225726 RAB25P57735 213 aa12.82□□□□□ -0.36
CCDC47-201ENST00000225726 RSU1Q15404 277 aa12.82□□□□□ -0.36
CCDC47-201ENST00000225726 BHLHA15Q7RTS1 189 aaPredicted RBP12.82□□□□□ -0.36
CCDC47-201ENST00000225726 ZDHHC23Q8IYP9 409 aa12.82□□□□□ -0.36
CCDC47-201ENST00000225726 NAXEQ8NCW5 288 aa12.82□□□□□ -0.36
CCDC47-201ENST00000225726 LRRC20Q8TCA0 184 aa12.82□□□□□ -0.36
CCDC47-201ENST00000225726 C20orf85Q9H1P6 137 aa12.82□□□□□ -0.36
CCDC47-201ENST00000225726 GTF3C1Q12789 2109 aa12.82□□□□□ -0.36
CCDC47-201ENST00000225726 CFAP47Q6ZTR5 3102 aa12.82□□□□□ -0.36
CCDC47-201ENST00000225726 CD300LBA8K4G0 201 aa12.82□□□□□ -0.36
CCDC47-201ENST00000225726 FOXI3A8MTJ6 420 aaPredicted RBP12.82□□□□□ -0.36
CCDC47-201ENST00000225726 SPRY1O43609 319 aaPredicted RBP12.82□□□□□ -0.36
CCDC47-201ENST00000225726 CEACAM8P31997 349 aaPredicted RBP12.82□□□□□ -0.36
CCDC47-201ENST00000225726 CXADRP78310 365 aa12.82□□□□□ -0.36
CCDC47-201ENST00000225726 PNLIPRP3Q17RR3 467 aa12.82□□□□□ -0.36
CCDC47-201ENST00000225726 FAAP20Q6NZ36 180 aa12.82□□□□□ -0.36
CCDC47-201ENST00000225726 STEAP1BQ6NZ63 245 aa12.82□□□□□ -0.36
CCDC47-201ENST00000225726 RPRMLQ8N4K4 120 aa12.82□□□□□ -0.36
CCDC47-201ENST00000225726 PXT1Q8NFP0 134 aa12.82□□□□□ -0.36
CCDC47-201ENST00000225726 SFXN3Q9BWM7 321 aa12.82□□□□□ -0.36
CCDC47-201ENST00000225726 IL36GQ9NZH8 169 aa12.82□□□□□ -0.36
CCDC47-201ENST00000225726 URB1O60287 2271 aaKnown RBP12.81□□□□□ -0.36
CCDC47-201ENST00000225726 SMPD2O60906 423 aa12.81□□□□□ -0.36
CCDC47-201ENST00000225726 ZNF780AO75290 641 aaPredicted RBP12.81□□□□□ -0.36
CCDC47-201ENST00000225726 CD3DP04234 171 aa12.81□□□□□ -0.36
CCDC47-201ENST00000225726 CPT2P23786 658 aa12.81□□□□□ -0.36
CCDC47-201ENST00000225726 PLAC9Q5JTB6 97 aa12.81□□□□□ -0.36
CCDC47-201ENST00000225726 PQLC2LA1A4F0 135 aa12.81□□□□□ -0.36
CCDC47-201ENST00000225726 CYB5AP00167 134 aa12.81□□□□□ -0.36
CCDC47-201ENST00000225726 IGKV3-15P01624 115 aa12.81□□□□□ -0.36
CCDC47-201ENST00000225726 TMEM50BP56557 158 aa12.81□□□□□ -0.36
CCDC47-201ENST00000225726 PDZK1IP1Q13113 114 aa12.81□□□□□ -0.36
CCDC47-201ENST00000225726 CEACAM21Q3KPI0 293 aa12.81□□□□□ -0.36
CCDC47-201ENST00000225726 SNAPC3Q92966 411 aa12.81□□□□□ -0.36
CCDC47-201ENST00000225726 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP12.81□□□□□ -0.36
CCDC47-201ENST00000225726 TUBD1Q9UJT1 453 aa12.81□□□□□ -0.36
CCDC47-201ENST00000225726 AMDHD2Q9Y303 409 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms