RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 ARL2BPQ9Y2Y0 163 aa13.21□□□□□ -0.29
CLN3-246ENST00000636228 A0A0G2JK05 382 aa13.2□□□□□ -0.3
CLN3-246ENST00000636228 ANKRD61A6NGH8 418 aa13.2□□□□□ -0.3
CLN3-246ENST00000636228 TSPAN9O75954 239 aa13.2□□□□□ -0.3
CLN3-246ENST00000636228 CST4P01036 141 aa13.2□□□□□ -0.3
CLN3-246ENST00000636228 ACAA1P09110 424 aaPredicted RBP13.2□□□□□ -0.3
CLN3-246ENST00000636228 GPM6AP51674 278 aa13.2□□□□□ -0.3
CLN3-246ENST00000636228 UBE2E1P51965 193 aa13.2□□□□□ -0.3
CLN3-246ENST00000636228 GNGT1P63211 74 aa13.2□□□□□ -0.3
CLN3-246ENST00000636228 PIGWQ7Z7B1 504 aa13.2□□□□□ -0.3
CLN3-246ENST00000636228 TMEM179BQ7Z7N9 219 aa13.2□□□□□ -0.3
CLN3-246ENST00000636228 ZNRF1Q8ND25 227 aa13.2□□□□□ -0.3
CLN3-246ENST00000636228 OR8B12Q8NGG6 310 aa13.2□□□□□ -0.3
CLN3-246ENST00000636228 OR10Z1Q8NGY1 313 aa13.2□□□□□ -0.3
CLN3-246ENST00000636228 OTOSQ8NHW6 89 aa13.2□□□□□ -0.3
CLN3-246ENST00000636228 PPP1R35Q8TAP8 253 aa13.2□□□□□ -0.3
CLN3-246ENST00000636228 RORBQ92753 470 aa13.2□□□□□ -0.3
CLN3-246ENST00000636228 MED30Q96HR3 178 aa13.2□□□□□ -0.3
CLN3-246ENST00000636228 RGCCQ9H4X1 137 aa13.2□□□□□ -0.3
CLN3-246ENST00000636228 NLKQ9UBE8 527 aa13.2□□□□□ -0.3
CLN3-246ENST00000636228 NOTCH1P46531 2555 aa13.19□□□□□ -0.3
CLN3-246ENST00000636228 IGKV1D-17A0A075B6S4 117 aa13.19□□□□□ -0.3
CLN3-246ENST00000636228 TMEM210A6NLX4 147 aa13.19□□□□□ -0.3
CLN3-246ENST00000636228 OR2AT4A6NND4 320 aa13.19□□□□□ -0.3
CLN3-246ENST00000636228 PRR23D1E9PI22 279 aaPredicted RBP13.19□□□□□ -0.3
CLN3-246ENST00000636228 SIGLEC5O15389 551 aa13.19□□□□□ -0.3
CLN3-246ENST00000636228 PRR23D2P0DMB1 279 aaPredicted RBP13.19□□□□□ -0.3
CLN3-246ENST00000636228 GLRA1P23415 457 aa13.19□□□□□ -0.3
CLN3-246ENST00000636228 DCTDP32321 178 aa13.19□□□□□ -0.3
CLN3-246ENST00000636228 TGFBR2P37173 567 aa13.19□□□□□ -0.3
CLN3-246ENST00000636228 GINS1Q14691 196 aa13.19□□□□□ -0.3
CLN3-246ENST00000636228 LY6EQ16553 131 aa13.19□□□□□ -0.3
CLN3-246ENST00000636228 FAM98BQ52LJ0 330 aaKnown RBP13.19□□□□□ -0.3
CLN3-246ENST00000636228 FAM76BQ5HYJ3 339 aa13.19□□□□□ -0.3
CLN3-246ENST00000636228 CEP78Q5JTW2 689 aa13.19□□□□□ -0.3
CLN3-246ENST00000636228 LCN8Q6JVE9 175 aa13.19□□□□□ -0.3
CLN3-246ENST00000636228 HCP5Q6MZN7 132 aa13.19□□□□□ -0.3
CLN3-246ENST00000636228 CD300LDQ6UXZ3 194 aa13.19□□□□□ -0.3
CLN3-246ENST00000636228 ZDHHC23Q8IYP9 409 aa13.19□□□□□ -0.3
CLN3-246ENST00000636228 FTMTQ8N4E7 242 aa13.19□□□□□ -0.3
CLN3-246ENST00000636228 C11orf44Q8N8P7 122 aa13.19□□□□□ -0.3
CLN3-246ENST00000636228 BBS1Q8NFJ9 593 aa13.19□□□□□ -0.3
CLN3-246ENST00000636228 GIPC3Q8TF64 312 aa13.19□□□□□ -0.3
CLN3-246ENST00000636228 DMRTB1Q96MA1 342 aa13.19□□□□□ -0.3
CLN3-246ENST00000636228 DNTTIP1Q9H147 329 aa13.19□□□□□ -0.3
CLN3-246ENST00000636228 MAB21L2Q9Y586 359 aa13.19□□□□□ -0.3
CLN3-246ENST00000636228 ZNF732B4DXR9 585 aa13.18□□□□□ -0.3
CLN3-246ENST00000636228 H0YAE9 185 aa13.18□□□□□ -0.3
CLN3-246ENST00000636228 H3BUX3 64 aa13.18□□□□□ -0.3
CLN3-246ENST00000636228 PSMD9O00233 223 aa13.18□□□□□ -0.3
CLN3-246ENST00000636228 DCTN3O75935 186 aa13.18□□□□□ -0.3
CLN3-246ENST00000636228 PSG2P11465 335 aa13.18□□□□□ -0.3
CLN3-246ENST00000636228 PAICSP22234 425 aaKnown RBP13.18□□□□□ -0.3
CLN3-246ENST00000636228 TRIM25Q14258 630 aaKnown RBP13.18□□□□□ -0.3
CLN3-246ENST00000636228 C1orf122Q6ZSJ8 110 aa13.18□□□□□ -0.3
CLN3-246ENST00000636228 CPOQ8IVL8 374 aa13.18□□□□□ -0.3
CLN3-246ENST00000636228 FAM185AQ8N0U4 392 aa13.18□□□□□ -0.3
CLN3-246ENST00000636228 TMEM185AQ8NFB2 350 aa13.18□□□□□ -0.3
CLN3-246ENST00000636228 OR5R1Q8NH85 324 aa13.18□□□□□ -0.3
CLN3-246ENST00000636228 HIST1H2AAQ96QV6 131 aa13.18□□□□□ -0.3
CLN3-246ENST00000636228 CHID1Q9BWS9 393 aa13.18□□□□□ -0.3
CLN3-246ENST00000636228 METTL8Q9H825 291 aaKnown RBP13.18□□□□□ -0.3
CLN3-246ENST00000636228 YY1AP1Q9H869 796 aa13.18□□□□□ -0.3
CLN3-246ENST00000636228 LRP12Q9Y561 859 aa13.18□□□□□ -0.3
CLN3-246ENST00000636228 WNK1Q9H4A3 2382 aa13.17□□□□□ -0.3
CLN3-246ENST00000636228 M0R1W7 72 aa13.17□□□□□ -0.3
CLN3-246ENST00000636228 ANGPTL7O43827 346 aa13.17□□□□□ -0.3
CLN3-246ENST00000636228 CST1P01037 141 aa13.17□□□□□ -0.3
CLN3-246ENST00000636228 CSF1P09603 554 aa13.17□□□□□ -0.3
CLN3-246ENST00000636228 GABRA5P31644 462 aa13.17□□□□□ -0.3
CLN3-246ENST00000636228 CAV3P56539 151 aa13.17□□□□□ -0.3
CLN3-246ENST00000636228 ERVFRD-1P60508 538 aa13.17□□□□□ -0.3
CLN3-246ENST00000636228 RPS7P62081 194 aaKnown RBP13.17□□□□□ -0.3
CLN3-246ENST00000636228 SNCBQ16143 134 aa13.17□□□□□ -0.3
CLN3-246ENST00000636228 TMEM236Q5W0B7 351 aa13.17□□□□□ -0.3
CLN3-246ENST00000636228 MOB3CQ70IA8 216 aa13.17□□□□□ -0.3
CLN3-246ENST00000636228 FAM81AQ8TBF8 368 aa13.17□□□□□ -0.3
CLN3-246ENST00000636228 PPP1R14AQ96A00 147 aa13.17□□□□□ -0.3
CLN3-246ENST00000636228 AJUBAQ96IF1 538 aa13.17□□□□□ -0.3
CLN3-246ENST00000636228 CLPTM1LQ96KA5 538 aa13.17□□□□□ -0.3
CLN3-246ENST00000636228 ZNF488Q96MN9 340 aa13.17□□□□□ -0.3
CLN3-246ENST00000636228 SSX3Q99909 188 aa13.17□□□□□ -0.3
CLN3-246ENST00000636228 OR51I2Q9H344 312 aa13.17□□□□□ -0.3
CLN3-246ENST00000636228 C19orf12Q9NSK7 152 aa13.17□□□□□ -0.3
CLN3-246ENST00000636228 FOXJ3Q9UPW0 622 aa13.17□□□□□ -0.3
CLN3-246ENST00000636228 G3V4G9 280 aa13.16□□□□□ -0.3
CLN3-246ENST00000636228 PRKACGP22612 351 aa13.16□□□□□ -0.3
CLN3-246ENST00000636228 CAPZA1P52907 286 aa13.16□□□□□ -0.3
CLN3-246ENST00000636228 PSMA6P60900 246 aaKnown RBP13.16□□□□□ -0.3
CLN3-246ENST00000636228 ACSM1Q08AH1 577 aa13.16□□□□□ -0.3
CLN3-246ENST00000636228 BLMHQ13867 455 aa13.16□□□□□ -0.3
CLN3-246ENST00000636228 C2orf68Q2NKX9 166 aa13.16□□□□□ -0.3
CLN3-246ENST00000636228 NCR3LG1Q68D85 454 aa13.16□□□□□ -0.3
CLN3-246ENST00000636228 KRT77Q7Z794 578 aa13.16□□□□□ -0.3
CLN3-246ENST00000636228 MKXQ8IYA7 352 aa13.16□□□□□ -0.3
CLN3-246ENST00000636228 HS3ST5Q8IZT8 346 aa13.16□□□□□ -0.3
CLN3-246ENST00000636228 BATF2Q8N1L9 274 aa13.16□□□□□ -0.3
CLN3-246ENST00000636228 ZNF454Q8N9F8 522 aa13.16□□□□□ -0.3
CLN3-246ENST00000636228 BEND2Q8NDZ0 799 aa13.16□□□□□ -0.3
CLN3-246ENST00000636228 CCDC124Q96CT7 223 aaKnown RBP13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms