RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 OR2A4O95047 310 aa9.27□□□□□ -0.92
CUX1-221ENST00000622516 GIPP09681 153 aaPredicted RBP9.27□□□□□ -0.92
CUX1-221ENST00000622516 NFYAP23511 347 aaPredicted RBP9.27□□□□□ -0.92
CUX1-221ENST00000622516 VAMP1P23763 118 aa9.27□□□□□ -0.92
CUX1-221ENST00000622516 CTSSP25774 331 aa9.27□□□□□ -0.92
CUX1-221ENST00000622516 ARHGDIBP52566 201 aa9.27□□□□□ -0.92
CUX1-221ENST00000622516 SSBP1Q04837 148 aaKnown RBP9.27□□□□□ -0.92
CUX1-221ENST00000622516 ECH1Q13011 328 aa9.27□□□□□ -0.92
CUX1-221ENST00000622516 SREK1IP1Q8N9Q2 155 aaPredicted RBP9.27□□□□□ -0.92
CUX1-221ENST00000622516 OR4K15Q8NH41 348 aa9.27□□□□□ -0.92
CUX1-221ENST00000622516 OR2A7Q96R45 310 aa9.27□□□□□ -0.92
CUX1-221ENST00000622516 SF3B5Q9BWJ5 86 aaKnown RBP9.27□□□□□ -0.92
CUX1-221ENST00000622516 CLEC4MQ9H2X3 399 aaPredicted RBP9.27□□□□□ -0.92
CUX1-221ENST00000622516 SLCO5A1Q9H2Y9 848 aa9.27□□□□□ -0.92
CUX1-221ENST00000622516 FN3KRPQ9HA64 309 aa9.27□□□□□ -0.92
CUX1-221ENST00000622516 ZNF224Q9NZL3 707 aa9.27□□□□□ -0.92
CUX1-221ENST00000622516 NOP16Q9Y3C1 178 aaKnown RBP9.27□□□□□ -0.92
CUX1-221ENST00000622516 ZNF292O60281 2723 aa9.27□□□□□ -0.93
CUX1-221ENST00000622516 DISC1C4P0D8 188 aa9.27□□□□□ -0.93
CUX1-221ENST00000622516 F5H5P2 479 aa9.27□□□□□ -0.93
CUX1-221ENST00000622516 IFNA6P05013 189 aa9.27□□□□□ -0.93
CUX1-221ENST00000622516 MGMTP16455 207 aa9.27□□□□□ -0.93
CUX1-221ENST00000622516 BLVRBP30043 206 aaPredicted RBP9.27□□□□□ -0.93
CUX1-221ENST00000622516 OTX1P32242 354 aaPredicted RBP9.27□□□□□ -0.93
CUX1-221ENST00000622516 NPY4RP50391 375 aa9.27□□□□□ -0.93
CUX1-221ENST00000622516 ZNF133P52736 654 aaPredicted RBP9.27□□□□□ -0.93
CUX1-221ENST00000622516 MTCP1P56278 107 aa9.27□□□□□ -0.93
CUX1-221ENST00000622516 HIST1H3AP68431 136 aa9.27□□□□□ -0.93
CUX1-221ENST00000622516 PPP1R1AQ13522 171 aa9.27□□□□□ -0.93
CUX1-221ENST00000622516 PDCD1Q15116 288 aa9.27□□□□□ -0.93
CUX1-221ENST00000622516 MICBQ29980 383 aa9.27□□□□□ -0.93
CUX1-221ENST00000622516 NKAPLQ5M9Q1 402 aa9.27□□□□□ -0.93
CUX1-221ENST00000622516 HIST2H3PS2Q5TEC6 136 aa9.27□□□□□ -0.93
CUX1-221ENST00000622516 FOXL2NBQ6ZUU3 175 aa9.27□□□□□ -0.93
CUX1-221ENST00000622516 HIST2H3AQ71DI3 136 aa9.27□□□□□ -0.93
CUX1-221ENST00000622516 TUSC5Q8IXB3 177 aa9.27□□□□□ -0.93
CUX1-221ENST00000622516 C12orf45Q8N5I9 185 aaPredicted RBP9.27□□□□□ -0.93
CUX1-221ENST00000622516 PNLDC1Q8NA58 520 aaKnown RBP9.27□□□□□ -0.93
CUX1-221ENST00000622516 OR1F12Q8NHA8 337 aa9.27□□□□□ -0.93
CUX1-221ENST00000622516 MARCH1Q8TCQ1 289 aa9.27□□□□□ -0.93
CUX1-221ENST00000622516 REEP6Q96HR9 211 aa9.27□□□□□ -0.93
CUX1-221ENST00000622516 NARFLQ9H6Q4 476 aa9.27□□□□□ -0.93
CUX1-221ENST00000622516 BOKQ9UMX3 212 aaPredicted RBP9.27□□□□□ -0.93
CUX1-221ENST00000622516 TRIM77I1YAP6 450 aa9.27□□□□□ -0.93
CUX1-221ENST00000622516 L7N2F9 121 aa9.27□□□□□ -0.93
CUX1-221ENST00000622516 KCNAB3O43448 404 aa9.27□□□□□ -0.93
CUX1-221ENST00000622516 ZNF205O95201 554 aa9.27□□□□□ -0.93
CUX1-221ENST00000622516 HTR3BO95264 441 aa9.27□□□□□ -0.93
CUX1-221ENST00000622516 IGLV3-1P01715 115 aa9.27□□□□□ -0.93
CUX1-221ENST00000622516 TMEM225BP0DP42 221 aa9.27□□□□□ -0.93
CUX1-221ENST00000622516 HIST1H1DP16402 221 aaKnown RBP9.27□□□□□ -0.93
CUX1-221ENST00000622516 RAP2BP61225 183 aa9.27□□□□□ -0.93
CUX1-221ENST00000622516 SRSF6Q13247 344 aaKnown RBP9.27□□□□□ -0.93
CUX1-221ENST00000622516 OPCMLQ14982 345 aa9.27□□□□□ -0.93
CUX1-221ENST00000622516 ANKRD39Q53RE8 183 aa9.27□□□□□ -0.93
CUX1-221ENST00000622516 KCTD9Q7L273 389 aa9.27□□□□□ -0.93
CUX1-221ENST00000622516 FAM219AQ8IW50 185 aa9.27□□□□□ -0.93
CUX1-221ENST00000622516 STEAP2Q8NFT2 490 aa9.27□□□□□ -0.93
CUX1-221ENST00000622516 ST8SIA4Q92187 359 aa9.27□□□□□ -0.93
CUX1-221ENST00000622516 FBXW5Q969U6 566 aa9.27□□□□□ -0.93
CUX1-221ENST00000622516 S100A13Q99584 98 aa9.27□□□□□ -0.93
CUX1-221ENST00000622516 SLC25A21Q9BQT8 299 aaPredicted RBP9.27□□□□□ -0.93
CUX1-221ENST00000622516 TTTY12Q9BZ98 90 aa9.27□□□□□ -0.93
CUX1-221ENST00000622516 ZNF703Q9H7S9 590 aaPredicted RBP9.27□□□□□ -0.93
CUX1-221ENST00000622516 GPR35Q9HC97 309 aa9.27□□□□□ -0.93
CUX1-221ENST00000622516 UPB1Q9UBR1 384 aa9.27□□□□□ -0.93
CUX1-221ENST00000622516 PLEKHA6Q9Y2H5 1048 aa9.27□□□□□ -0.93
CUX1-221ENST00000622516 A0A0U1RQV5 110 aa9.26□□□□□ -0.93
CUX1-221ENST00000622516 MELTFP08582 738 aa9.26□□□□□ -0.93
CUX1-221ENST00000622516 CRYGSP22914 178 aa9.26□□□□□ -0.93
CUX1-221ENST00000622516 PLGLB1Q02325 96 aa9.26□□□□□ -0.93
CUX1-221ENST00000622516 ATXN7L3Q14CW9 347 aaPredicted RBP9.26□□□□□ -0.93
CUX1-221ENST00000622516 ZNF528Q3MIS6 628 aa9.26□□□□□ -0.93
CUX1-221ENST00000622516 LY6G6FQ5SQ64 297 aa9.26□□□□□ -0.93
CUX1-221ENST00000622516 PXDC1Q5TGL8 231 aa9.26□□□□□ -0.93
CUX1-221ENST00000622516 TMPRSS7Q7RTY8 843 aa9.26□□□□□ -0.93
CUX1-221ENST00000622516 C6orf201Q7Z4U5 140 aa9.26□□□□□ -0.93
CUX1-221ENST00000622516 OR10Z1Q8NGY1 313 aa9.26□□□□□ -0.93
CUX1-221ENST00000622516 SSC4DQ8WTU2 575 aa9.26□□□□□ -0.93
CUX1-221ENST00000622516 HDHD3Q9BSH5 251 aaPredicted RBP9.26□□□□□ -0.93
CUX1-221ENST00000622516 CHST5Q9GZS9 411 aa9.26□□□□□ -0.93
CUX1-221ENST00000622516 OR10A2Q9H208 303 aa9.26□□□□□ -0.93
CUX1-221ENST00000622516 SLC7A10Q9NS82 523 aa9.26□□□□□ -0.93
CUX1-221ENST00000622516 V9GYS6 101 aa9.26□□□□□ -0.93
CUX1-221ENST00000622516 IGKV1-27A0A075B6S5 117 aa9.26□□□□□ -0.93
CUX1-221ENST00000622516 MCRIP1C9JLW8 97 aa9.26□□□□□ -0.93
CUX1-221ENST00000622516 ZNF587BE7ETH6 402 aa9.26□□□□□ -0.93
CUX1-221ENST00000622516 TEX46H3BTG2 121 aa9.26□□□□□ -0.93
CUX1-221ENST00000622516 MRPL33O75394 65 aaKnown RBP9.26□□□□□ -0.93
CUX1-221ENST00000622516 LHX2P50458 406 aa9.26□□□□□ -0.93
CUX1-221ENST00000622516 TMEM251Q8N6I4 163 aa9.26□□□□□ -0.93
CUX1-221ENST00000622516 CPEB3Q8NE35 698 aaKnown RBP9.26□□□□□ -0.93
CUX1-221ENST00000622516 SEMA6DQ8NFY4 1073 aa9.26□□□□□ -0.93
CUX1-221ENST00000622516 FAM173AQ9BQD7 235 aa9.26□□□□□ -0.93
CUX1-221ENST00000622516 TMEM9BQ9NQ34 198 aa9.26□□□□□ -0.93
CUX1-221ENST00000622516 PTTG3PQ9NZH4 202 aa9.26□□□□□ -0.93
CUX1-221ENST00000622516 PCDHGA1Q9Y5H4 931 aa9.26□□□□□ -0.93
CUX1-221ENST00000622516 CSAG2Q9Y5P2 127 aa9.26□□□□□ -0.93
CUX1-221ENST00000622516 AKAP13Q12802 2813 aa9.26□□□□□ -0.93
CUX1-221ENST00000622516 ATMQ13315 3056 aa9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 1465.7 ms