RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 TNFRSF1AP19438 455 aa16.67■□□□□ 0.26
UPF3A-211ENST00000618700 GABRA5P31644 462 aa16.67■□□□□ 0.26
UPF3A-211ENST00000618700 THBS2P35442 1172 aa16.67■□□□□ 0.26
UPF3A-211ENST00000618700 CRYBB2P43320 205 aa16.67■□□□□ 0.26
UPF3A-211ENST00000618700 MZT1Q08AG7 82 aa16.67■□□□□ 0.26
UPF3A-211ENST00000618700 PRAMEF6Q5VXH4 476 aa16.67■□□□□ 0.26
UPF3A-211ENST00000618700 KRTAP1-3Q8IUG1 177 aa16.67■□□□□ 0.26
UPF3A-211ENST00000618700 OR5A2Q8NGI9 324 aa16.67■□□□□ 0.26
UPF3A-211ENST00000618700 THRSPQ92748 146 aa16.67■□□□□ 0.26
UPF3A-211ENST00000618700 RDH5Q92781 318 aa16.67■□□□□ 0.26
UPF3A-211ENST00000618700 TECTBQ96PL2 329 aa16.67■□□□□ 0.26
UPF3A-211ENST00000618700 OR14A2Q96R54 314 aa16.67■□□□□ 0.26
UPF3A-211ENST00000618700 MYOZ1Q9NP98 299 aaPredicted RBP16.67■□□□□ 0.26
UPF3A-211ENST00000618700 TANC2Q9HCD6 1990 aa16.67■□□□□ 0.26
UPF3A-211ENST00000618700 IGKV1-9A0A0C4DH69 117 aa16.66■□□□□ 0.26
UPF3A-211ENST00000618700 IGHV1-69-2A0A0G2JMI3 117 aa16.66■□□□□ 0.26
UPF3A-211ENST00000618700 OR5B21A6NL26 309 aa16.66■□□□□ 0.26
UPF3A-211ENST00000618700 SSX4O60224 188 aa16.66■□□□□ 0.26
UPF3A-211ENST00000618700 JUNBP17275 347 aaPredicted RBP16.66■□□□□ 0.26
UPF3A-211ENST00000618700 PSMA1P25786 263 aaKnown RBP16.66■□□□□ 0.26
UPF3A-211ENST00000618700 INSL4Q14641 139 aa16.66■□□□□ 0.26
UPF3A-211ENST00000618700 TRAM1Q15629 374 aa16.66■□□□□ 0.26
UPF3A-211ENST00000618700 FAM76BQ5HYJ3 339 aa16.66■□□□□ 0.26
UPF3A-211ENST00000618700 DMRTC1Q5HYR2 192 aa16.66■□□□□ 0.26
UPF3A-211ENST00000618700 ZNF529Q6P280 563 aa16.66■□□□□ 0.26
UPF3A-211ENST00000618700 UNQ9370/PRO34162Q6UXP9 181 aa16.66■□□□□ 0.26
UPF3A-211ENST00000618700 DNM1P46Q6ZS02 220 aa16.66■□□□□ 0.26
UPF3A-211ENST00000618700 SERPINA12Q8IW75 414 aa16.66■□□□□ 0.26
UPF3A-211ENST00000618700 YIPF5Q969M3 257 aa16.66■□□□□ 0.26
UPF3A-211ENST00000618700 DERL3Q96Q80 235 aa16.66■□□□□ 0.26
UPF3A-211ENST00000618700 HIST1H2AAQ96QV6 131 aa16.66■□□□□ 0.26
UPF3A-211ENST00000618700 TLNRD1Q9H1K6 362 aa16.66■□□□□ 0.26
UPF3A-211ENST00000618700 ZCCHC4Q9H5U6 513 aa16.66■□□□□ 0.26
UPF3A-211ENST00000618700 VCX3AQ9NNX9 186 aa16.66■□□□□ 0.26
UPF3A-211ENST00000618700 GCM1Q9NP62 436 aa16.66■□□□□ 0.26
UPF3A-211ENST00000618700 CACNG2Q9Y698 323 aa16.66■□□□□ 0.26
UPF3A-211ENST00000618700 PRRC2AP48634 2157 aaKnown RBP16.65■□□□□ 0.26
UPF3A-211ENST00000618700 IGHV3-64DA0A0J9YX35 117 aa16.65■□□□□ 0.26
UPF3A-211ENST00000618700 PQLC2LA1A4F0 135 aa16.65■□□□□ 0.26
UPF3A-211ENST00000618700 MAGEA13PA6NCF6 341 aa16.65■□□□□ 0.26
UPF3A-211ENST00000618700 TMEM210A6NLX4 147 aa16.65■□□□□ 0.26
UPF3A-211ENST00000618700 CCRL2O00421 344 aa16.65■□□□□ 0.26
UPF3A-211ENST00000618700 ALX3O95076 343 aa16.65■□□□□ 0.26
UPF3A-211ENST00000618700 SERPINA3P01011 423 aa16.65■□□□□ 0.26
UPF3A-211ENST00000618700 ATF1P18846 271 aa16.65■□□□□ 0.26
UPF3A-211ENST00000618700 FSTP19883 344 aa16.65■□□□□ 0.26
UPF3A-211ENST00000618700 MAPK3P27361 379 aaPredicted RBP16.65■□□□□ 0.26
UPF3A-211ENST00000618700 GPM6AP51674 278 aa16.65■□□□□ 0.26
UPF3A-211ENST00000618700 GNG3P63215 75 aa16.65■□□□□ 0.26
UPF3A-211ENST00000618700 ZNF154Q13106 437 aa16.65■□□□□ 0.26
UPF3A-211ENST00000618700 CNN3Q15417 329 aaKnown RBP16.65■□□□□ 0.26
UPF3A-211ENST00000618700 MPPED2Q15777 294 aa16.65■□□□□ 0.26
UPF3A-211ENST00000618700 ACSM3Q53FZ2 586 aa16.65■□□□□ 0.26
UPF3A-211ENST00000618700 PRSS57Q6UWY2 283 aa16.65■□□□□ 0.26
UPF3A-211ENST00000618700 TGIF2LYQ8IUE0 185 aa16.65■□□□□ 0.26
UPF3A-211ENST00000618700 ZNF525Q8N782 197 aa16.65■□□□□ 0.26
UPF3A-211ENST00000618700 OR1M1Q8NGA1 313 aa16.65■□□□□ 0.26
UPF3A-211ENST00000618700 OR5D14Q8NGL3 314 aa16.65■□□□□ 0.26
UPF3A-211ENST00000618700 OR13C9Q8NGT0 318 aa16.65■□□□□ 0.26
UPF3A-211ENST00000618700 Q8TCH9 128 aa16.65■□□□□ 0.26
UPF3A-211ENST00000618700 ERGIC1Q969X5 290 aa16.65■□□□□ 0.26
UPF3A-211ENST00000618700 RNF170Q96K19 258 aa16.65■□□□□ 0.26
UPF3A-211ENST00000618700 DLL4Q9NR61 685 aa16.65■□□□□ 0.26
UPF3A-211ENST00000618700 TAS2R4Q9NYW5 299 aa16.65■□□□□ 0.26
UPF3A-211ENST00000618700 ZNF732B4DXR9 585 aa16.64■□□□□ 0.25
UPF3A-211ENST00000618700 LYNX1G3V0Z9 82 aa16.64■□□□□ 0.25
UPF3A-211ENST00000618700 PIN1P1O15428 100 aa16.64■□□□□ 0.25
UPF3A-211ENST00000618700 SULT1B1O43704 296 aa16.64■□□□□ 0.25
UPF3A-211ENST00000618700 LYNX1P0DP58 116 aa16.64■□□□□ 0.25
UPF3A-211ENST00000618700 COL8A2P25067 703 aa16.64■□□□□ 0.25
UPF3A-211ENST00000618700 CD200R1LQ6Q8B3 271 aa16.64■□□□□ 0.25
UPF3A-211ENST00000618700 TMEM91Q6ZNR0 172 aa16.64■□□□□ 0.25
UPF3A-211ENST00000618700 MOGAT3Q86VF5 341 aa16.64■□□□□ 0.25
UPF3A-211ENST00000618700 DNAAF1Q8NEP3 725 aa16.64■□□□□ 0.25
UPF3A-211ENST00000618700 TMEM203Q969S6 136 aa16.64■□□□□ 0.25
UPF3A-211ENST00000618700 SPSB1Q96BD6 273 aa16.64■□□□□ 0.25
UPF3A-211ENST00000618700 MRPS26Q9BYN8 205 aaKnown RBP16.64■□□□□ 0.25
UPF3A-211ENST00000618700 PPP1R3CQ9UQK1 317 aa16.64■□□□□ 0.25
UPF3A-211ENST00000618700 OTOGQ6ZRI0 2925 aa16.64■□□□□ 0.25
UPF3A-211ENST00000618700 MYO9AB2RTY4 2548 aa16.64■□□□□ 0.25
UPF3A-211ENST00000618700 VPS13CQ709C8 3753 aa16.64■□□□□ 0.25
UPF3A-211ENST00000618700 MAP1AP78559 2803 aaPredicted RBP16.63■□□□□ 0.25
UPF3A-211ENST00000618700 LRP5LA4QPB2 252 aa16.63■□□□□ 0.25
UPF3A-211ENST00000618700 CDC14BO60729 498 aa16.63■□□□□ 0.25
UPF3A-211ENST00000618700 GPX5O75715 221 aa16.63■□□□□ 0.25
UPF3A-211ENST00000618700 RGS9O75916 674 aaPredicted RBP16.63■□□□□ 0.25
UPF3A-211ENST00000618700 GRPP07492 148 aa16.63■□□□□ 0.25
UPF3A-211ENST00000618700 CSF3P09919 207 aa16.63■□□□□ 0.25
UPF3A-211ENST00000618700 IGFBP3P17936 291 aaPredicted RBP16.63■□□□□ 0.25
UPF3A-211ENST00000618700 PRKACBP22694 351 aa16.63■□□□□ 0.25
UPF3A-211ENST00000618700 PMELP40967 661 aa16.63■□□□□ 0.25
UPF3A-211ENST00000618700 FUT6P51993 359 aa16.63■□□□□ 0.25
UPF3A-211ENST00000618700 ART1P52961 327 aa16.63■□□□□ 0.25
UPF3A-211ENST00000618700 HNRNPA0Q13151 305 aaKnown RBP16.63■□□□□ 0.25
UPF3A-211ENST00000618700 ZNF181Q2M3W8 571 aa16.63■□□□□ 0.25
UPF3A-211ENST00000618700 Q5PR19 223 aa16.63■□□□□ 0.25
UPF3A-211ENST00000618700 C11orf53Q8IXP5 236 aa16.63■□□□□ 0.25
UPF3A-211ENST00000618700 NPRL2Q8WTW4 380 aa16.63■□□□□ 0.25
UPF3A-211ENST00000618700 ORAI1Q96D31 301 aa16.63■□□□□ 0.25
UPF3A-211ENST00000618700 OR51I2Q9H344 312 aa16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms