RNA–Protein interactions for RNA: ENST00000613788.1

CD48-203, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,500 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-203ENST00000613788 PPIL3Q9H2H8 161 aaKnown RBP12.49□□□□□ -0.41
CD48-203ENST00000613788 TPK1Q9H3S4 243 aa12.49□□□□□ -0.41
CD48-203ENST00000613788 CRYBG3Q68DQ2 2970 aa12.48□□□□□ -0.41
CD48-203ENST00000613788 TRAV1-2A0A0B4J238 106 aa12.48□□□□□ -0.41
CD48-203ENST00000613788 FAM230AA0A1W2PPH8 454 aa12.48□□□□□ -0.41
CD48-203ENST00000613788 TMEM210A6NLX4 147 aa12.48□□□□□ -0.41
CD48-203ENST00000613788 ZNF732B4DXR9 585 aa12.48□□□□□ -0.41
CD48-203ENST00000613788 OVOL3O00110 214 aa12.48□□□□□ -0.41
CD48-203ENST00000613788 MAS1P04201 325 aa12.48□□□□□ -0.41
CD48-203ENST00000613788 HCKP08631 526 aa12.48□□□□□ -0.41
CD48-203ENST00000613788 TNFRSF1AP19438 455 aa12.48□□□□□ -0.41
CD48-203ENST00000613788 RBP2P50120 134 aa12.48□□□□□ -0.41
CD48-203ENST00000613788 GPM6AP51674 278 aa12.48□□□□□ -0.41
CD48-203ENST00000613788 ATP1B3P54709 279 aa12.48□□□□□ -0.41
CD48-203ENST00000613788 KRTAP10-9P60411 292 aa12.48□□□□□ -0.41
CD48-203ENST00000613788 CCL8P80075 99 aa12.48□□□□□ -0.41
CD48-203ENST00000613788 MAB21L1Q13394 359 aa12.48□□□□□ -0.41
CD48-203ENST00000613788 TESK1Q15569 626 aa12.48□□□□□ -0.41
CD48-203ENST00000613788 DMRTC1Q5HYR2 192 aa12.48□□□□□ -0.41
CD48-203ENST00000613788 LHFPL2Q6ZUX7 228 aa12.48□□□□□ -0.41
CD48-203ENST00000613788 CLVS1Q8IUQ0 354 aaPredicted RBP12.48□□□□□ -0.41
CD48-203ENST00000613788 NPRL2Q8WTW4 380 aa12.48□□□□□ -0.41
CD48-203ENST00000613788 NEU4Q8WWR8 484 aaPredicted RBP12.48□□□□□ -0.41
CD48-203ENST00000613788 MEGF10Q96KG7 1140 aa12.48□□□□□ -0.41
CD48-203ENST00000613788 OR2V2Q96R30 315 aa12.48□□□□□ -0.41
CD48-203ENST00000613788 CENPOQ9BU64 300 aa12.48□□□□□ -0.41
CD48-203ENST00000613788 RAI1Q7Z5J4 1906 aaPredicted RBP12.48□□□□□ -0.41
CD48-203ENST00000613788 LOC100289279A0A1B0GTE1 492 aa12.47□□□□□ -0.41
CD48-203ENST00000613788 PQLC2LA1A4F0 135 aa12.47□□□□□ -0.41
CD48-203ENST00000613788 NOL3O60936 208 aaKnown RBP12.47□□□□□ -0.41
CD48-203ENST00000613788 THBS2P35442 1172 aa12.47□□□□□ -0.41
CD48-203ENST00000613788 CDKN1AP38936 164 aa12.47□□□□□ -0.41
CD48-203ENST00000613788 PSMD7P51665 324 aa12.47□□□□□ -0.41
CD48-203ENST00000613788 TMBIM6P55061 237 aa12.47□□□□□ -0.41
CD48-203ENST00000613788 MTCP1P56278 107 aa12.47□□□□□ -0.41
CD48-203ENST00000613788 FAM76BQ5HYJ3 339 aa12.47□□□□□ -0.41
CD48-203ENST00000613788 ZNF573Q86YE8 665 aa12.47□□□□□ -0.41
CD48-203ENST00000613788 CDH26Q8IXH8 852 aa12.47□□□□□ -0.41
CD48-203ENST00000613788 NKAIN3Q8N8D7 197 aa12.47□□□□□ -0.41
CD48-203ENST00000613788 OR51A2Q8NGJ7 313 aa12.47□□□□□ -0.41
CD48-203ENST00000613788 TRMT10AQ8TBZ6 339 aaKnown RBP12.47□□□□□ -0.41
CD48-203ENST00000613788 LIME1Q9H400 295 aa12.47□□□□□ -0.41
CD48-203ENST00000613788 SAP30LQ9HAJ7 183 aa12.47□□□□□ -0.41
CD48-203ENST00000613788 HRNRQ86YZ3 2850 aaPredicted RBP12.47□□□□□ -0.41
CD48-203ENST00000613788 LRP5LA4QPB2 252 aa12.47□□□□□ -0.41
CD48-203ENST00000613788 PDCD5O14737 125 aa12.47□□□□□ -0.41
CD48-203ENST00000613788 GABARAPO95166 117 aa12.47□□□□□ -0.41
CD48-203ENST00000613788 PTBP3O95758 552 aaKnown RBP12.47□□□□□ -0.41
CD48-203ENST00000613788 GRPP07492 148 aa12.47□□□□□ -0.41
CD48-203ENST00000613788 MTNR1BP49286 362 aa12.47□□□□□ -0.41
CD48-203ENST00000613788 LSM3P62310 102 aaKnown RBP12.47□□□□□ -0.41
CD48-203ENST00000613788 DDI2Q5TDH0 399 aa12.47□□□□□ -0.41
CD48-203ENST00000613788 SLC16A12Q6ZSM3 486 aa12.47□□□□□ -0.41
CD48-203ENST00000613788 LRRTM1Q86UE6 522 aa12.47□□□□□ -0.41
CD48-203ENST00000613788 TPRA1Q86W33 373 aa12.47□□□□□ -0.41
CD48-203ENST00000613788 RAB2BQ8WUD1 216 aa12.47□□□□□ -0.41
CD48-203ENST00000613788 ITLN1Q8WWA0 313 aa12.47□□□□□ -0.41
CD48-203ENST00000613788 NRGNQ92686 78 aa12.47□□□□□ -0.41
CD48-203ENST00000613788 ERGIC1Q969X5 290 aa12.47□□□□□ -0.41
CD48-203ENST00000613788 FOXRED1Q96CU9 486 aaPredicted RBP12.47□□□□□ -0.41
CD48-203ENST00000613788 SORCS2Q96PQ0 1159 aa12.47□□□□□ -0.41
CD48-203ENST00000613788 BCL7BQ9BQE9 202 aa12.47□□□□□ -0.41
CD48-203ENST00000613788 NDUFA13Q9P0J0 144 aa12.47□□□□□ -0.41
CD48-203ENST00000613788 LRBAP50851 2863 aa12.46□□□□□ -0.42
CD48-203ENST00000613788 DNASE1P24855 282 aa12.46□□□□□ -0.42
CD48-203ENST00000613788 ZNF93P35789 620 aaPredicted RBP12.46□□□□□ -0.42
CD48-203ENST00000613788 GATA4P43694 442 aa12.46□□□□□ -0.42
CD48-203ENST00000613788 ZNF154Q13106 437 aa12.46□□□□□ -0.42
CD48-203ENST00000613788 KISS1Q15726 138 aa12.46□□□□□ -0.42
CD48-203ENST00000613788 CTF1Q16619 201 aa12.46□□□□□ -0.42
CD48-203ENST00000613788 GLT8D1Q68CQ7 371 aa12.46□□□□□ -0.42
CD48-203ENST00000613788 OR52N4Q8NGI2 321 aa12.46□□□□□ -0.42
CD48-203ENST00000613788 ZNF420Q8TAQ5 688 aaPredicted RBP12.46□□□□□ -0.42
CD48-203ENST00000613788 GPER1Q99527 375 aa12.46□□□□□ -0.42
CD48-203ENST00000613788 FGF23Q9GZV9 251 aaPredicted RBP12.46□□□□□ -0.42
CD48-203ENST00000613788 NAA50Q9GZZ1 169 aaKnown RBP12.46□□□□□ -0.42
CD48-203ENST00000613788 OR51I2Q9H344 312 aa12.46□□□□□ -0.42
CD48-203ENST00000613788 FN3KRPQ9HA64 309 aa12.46□□□□□ -0.42
CD48-203ENST00000613788 CELSR2Q9HCU4 2923 aa12.45□□□□□ -0.42
CD48-203ENST00000613788 CCDC160A6NGH7 325 aa12.45□□□□□ -0.42
CD48-203ENST00000613788 TRIM64BA6NI03 449 aa12.45□□□□□ -0.42
CD48-203ENST00000613788 A6NLC8 198 aa12.45□□□□□ -0.42
CD48-203ENST00000613788 F12P00748 615 aaPredicted RBP12.45□□□□□ -0.42
CD48-203ENST00000613788 RAB3BP20337 219 aa12.45□□□□□ -0.42
CD48-203ENST00000613788 HAAOP46952 286 aa12.45□□□□□ -0.42
CD48-203ENST00000613788 EFNA4P52798 201 aa12.45□□□□□ -0.42
CD48-203ENST00000613788 VBP1P61758 197 aa12.45□□□□□ -0.42
CD48-203ENST00000613788 PRAMEF6Q5VXH4 476 aa12.45□□□□□ -0.42
CD48-203ENST00000613788 WDR86Q86TI4 376 aa12.45□□□□□ -0.42
CD48-203ENST00000613788 PNLDC1Q8NA58 520 aaKnown RBP12.45□□□□□ -0.42
CD48-203ENST00000613788 RNF167Q9H6Y7 350 aa12.45□□□□□ -0.42
CD48-203ENST00000613788 GCM1Q9NP62 436 aa12.45□□□□□ -0.42
CD48-203ENST00000613788 ZNF701Q9NV72 531 aaPredicted RBP12.45□□□□□ -0.42
CD48-203ENST00000613788 PPP1R3CQ9UQK1 317 aa12.45□□□□□ -0.42
CD48-203ENST00000613788 PLEKHA6Q9Y2H5 1048 aa12.45□□□□□ -0.42
CD48-203ENST00000613788 AK6Q9Y3D8 172 aaKnown RBP12.45□□□□□ -0.42
CD48-203ENST00000613788 CEPT1Q9Y6K0 416 aa12.45□□□□□ -0.42
CD48-203ENST00000613788 DSCAMO60469 2012 aa12.44□□□□□ -0.42
CD48-203ENST00000613788 IGHV3-64DA0A0J9YX35 117 aa12.44□□□□□ -0.42
CD48-203ENST00000613788 SMIM31A0A1B0GVY4 71 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms