RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 RPL3LQ92901 407 aaKnown RBP16.31■□□□□ 0.2
SHKBP1-221ENST00000599833 TMEM80Q96HE8 168 aa16.31■□□□□ 0.2
SHKBP1-221ENST00000599833 RNF170Q96K19 258 aa16.31■□□□□ 0.2
SHKBP1-221ENST00000599833 RTL8AQ9BWD3 113 aa16.31■□□□□ 0.2
SHKBP1-221ENST00000599833 PAK1IP1Q9NWT1 392 aaPredicted RBP16.31■□□□□ 0.2
SHKBP1-221ENST00000599833 SIRT4Q9Y6E7 314 aaPredicted RBP16.31■□□□□ 0.2
SHKBP1-221ENST00000599833 JMJD1CQ15652 2540 aa16.3■□□□□ 0.2
SHKBP1-221ENST00000599833 PPIAL4EA0A075B759 164 aa16.3■□□□□ 0.2
SHKBP1-221ENST00000599833 ISPDA4D126 451 aa16.3■□□□□ 0.2
SHKBP1-221ENST00000599833 TMEM210A6NLX4 147 aa16.3■□□□□ 0.2
SHKBP1-221ENST00000599833 ANXA2P2A6NMY6 339 aa16.3■□□□□ 0.2
SHKBP1-221ENST00000599833 B4DSR2 109 aa16.3■□□□□ 0.2
SHKBP1-221ENST00000599833 PPIAL4DF5H284 164 aa16.3■□□□□ 0.2
SHKBP1-221ENST00000599833 CDIPTO14735 213 aa16.3■□□□□ 0.2
SHKBP1-221ENST00000599833 SYT7O43581 403 aa16.3■□□□□ 0.2
SHKBP1-221ENST00000599833 PLPP2O43688 288 aa16.3■□□□□ 0.2
SHKBP1-221ENST00000599833 ZFPL1O95159 310 aa16.3■□□□□ 0.2
SHKBP1-221ENST00000599833 NRASP01111 189 aa16.3■□□□□ 0.2
SHKBP1-221ENST00000599833 TGFAP01135 160 aa16.3■□□□□ 0.2
SHKBP1-221ENST00000599833 MSMBP08118 114 aa16.3■□□□□ 0.2
SHKBP1-221ENST00000599833 WNT2P09544 360 aa16.3■□□□□ 0.2
SHKBP1-221ENST00000599833 PPIAL4FP0DN26 164 aa16.3■□□□□ 0.2
SHKBP1-221ENST00000599833 CD80P33681 288 aa16.3■□□□□ 0.2
SHKBP1-221ENST00000599833 TGM4P49221 684 aa16.3■□□□□ 0.2
SHKBP1-221ENST00000599833 GPM6AP51674 278 aa16.3■□□□□ 0.2
SHKBP1-221ENST00000599833 DVL1P1P54792 670 aaPredicted RBP16.3■□□□□ 0.2
SHKBP1-221ENST00000599833 ST3GAL4Q11206 333 aa16.3■□□□□ 0.2
SHKBP1-221ENST00000599833 UBE2V2Q15819 145 aa16.3■□□□□ 0.2
SHKBP1-221ENST00000599833 CLVS2Q5SYC1 327 aa16.3■□□□□ 0.2
SHKBP1-221ENST00000599833 C6orf141Q5SZD1 244 aa16.3■□□□□ 0.2
SHKBP1-221ENST00000599833 TEX36Q5VZQ5 186 aa16.3■□□□□ 0.2
SHKBP1-221ENST00000599833 LYPD2Q6UXB3 125 aa16.3■□□□□ 0.2
SHKBP1-221ENST00000599833 ZNF841Q6ZN19 808 aa16.3■□□□□ 0.2
SHKBP1-221ENST00000599833 MOB3CQ70IA8 216 aa16.3■□□□□ 0.2
SHKBP1-221ENST00000599833 ZNF771Q7L3S4 317 aaPredicted RBP16.3■□□□□ 0.2
SHKBP1-221ENST00000599833 SCCPDHQ8NBX0 429 aa16.3■□□□□ 0.2
SHKBP1-221ENST00000599833 OR5A2Q8NGI9 324 aa16.3■□□□□ 0.2
SHKBP1-221ENST00000599833 OR11L1Q8NGX0 322 aa16.3■□□□□ 0.2
SHKBP1-221ENST00000599833 SGCDQ92629 289 aa16.3■□□□□ 0.2
SHKBP1-221ENST00000599833 ADAT3Q96EY9 351 aaPredicted RBP16.3■□□□□ 0.2
SHKBP1-221ENST00000599833 GPR173Q9NS66 373 aa16.3■□□□□ 0.2
SHKBP1-221ENST00000599833 CAB39Q9Y376 341 aaPredicted RBP16.3■□□□□ 0.2
SHKBP1-221ENST00000599833 PPIAL4AQ9Y536 164 aa16.3■□□□□ 0.2
SHKBP1-221ENST00000599833 A0A1B0GVI7 797 aa16.29■□□□□ 0.2
SHKBP1-221ENST00000599833 PQLC2LA1A4F0 135 aa16.29■□□□□ 0.2
SHKBP1-221ENST00000599833 IRGMA1A4Y4 181 aa16.29■□□□□ 0.2
SHKBP1-221ENST00000599833 LRRC30A6NM36 301 aa16.29■□□□□ 0.2
SHKBP1-221ENST00000599833 A8MXK9 166 aa16.29■□□□□ 0.2
SHKBP1-221ENST00000599833 SRRM5B3KS81 715 aa16.29■□□□□ 0.2
SHKBP1-221ENST00000599833 RHBDL1O75783 438 aa16.29■□□□□ 0.2
SHKBP1-221ENST00000599833 AMY2BP19961 511 aa16.29■□□□□ 0.2
SHKBP1-221ENST00000599833 C21orf33P30042 268 aaPredicted RBP16.29■□□□□ 0.2
SHKBP1-221ENST00000599833 PAX2Q02962 417 aa16.29■□□□□ 0.2
SHKBP1-221ENST00000599833 TMEM244Q5VVB8 128 aa16.29■□□□□ 0.2
SHKBP1-221ENST00000599833 FAM166AQ6J272 317 aa16.29■□□□□ 0.2
SHKBP1-221ENST00000599833 C1orf87Q8N0U7 546 aa16.29■□□□□ 0.2
SHKBP1-221ENST00000599833 SPICQ8N5J4 248 aa16.29■□□□□ 0.2
SHKBP1-221ENST00000599833 CCDC54Q8NEL0 328 aa16.29■□□□□ 0.2
SHKBP1-221ENST00000599833 BPIFB6Q8NFQ5 453 aa16.29■□□□□ 0.2
SHKBP1-221ENST00000599833 DACT3Q96B18 629 aaPredicted RBP16.29■□□□□ 0.2
SHKBP1-221ENST00000599833 RAB39BQ96DA2 213 aa16.29■□□□□ 0.2
SHKBP1-221ENST00000599833 SEH1LQ96EE3 360 aa16.29■□□□□ 0.2
SHKBP1-221ENST00000599833 CHST5Q9GZS9 411 aa16.29■□□□□ 0.2
SHKBP1-221ENST00000599833 UBAP1Q9NZ09 502 aa16.29■□□□□ 0.2
SHKBP1-221ENST00000599833 CTSZQ9UBR2 303 aa16.29■□□□□ 0.2
SHKBP1-221ENST00000599833 POLR3KQ9Y2Y1 108 aaPredicted RBP16.29■□□□□ 0.2
SHKBP1-221ENST00000599833 EXOSC1Q9Y3B2 195 aaKnown RBP16.29■□□□□ 0.2
SHKBP1-221ENST00000599833 RRP15Q9Y3B9 282 aaKnown RBP16.29■□□□□ 0.2
SHKBP1-221ENST00000599833 IGKV1-9A0A0C4DH69 117 aa16.28■□□□□ 0.2
SHKBP1-221ENST00000599833 EFCAB10A6NFE3 127 aa16.28■□□□□ 0.2
SHKBP1-221ENST00000599833 OR5B21A6NL26 309 aa16.28■□□□□ 0.2
SHKBP1-221ENST00000599833 A6NLC8 198 aa16.28■□□□□ 0.2
SHKBP1-221ENST00000599833 ZNF732B4DXR9 585 aa16.28■□□□□ 0.2
SHKBP1-221ENST00000599833 LGALS8O00214 317 aa16.28■□□□□ 0.2
SHKBP1-221ENST00000599833 SLC1A7O00341 560 aa16.28■□□□□ 0.2
SHKBP1-221ENST00000599833 CRLF1O75462 422 aa16.28■□□□□ 0.2
SHKBP1-221ENST00000599833 GNG3P63215 75 aa16.28■□□□□ 0.2
SHKBP1-221ENST00000599833 PLCXD3Q63HM9 321 aa16.28■□□□□ 0.2
SHKBP1-221ENST00000599833 SFRP4Q6FHJ7 346 aaPredicted RBP16.28■□□□□ 0.2
SHKBP1-221ENST00000599833 ASPHD2Q6ICH7 369 aa16.28■□□□□ 0.2
SHKBP1-221ENST00000599833 CRIP3Q6Q6R5 217 aa16.28■□□□□ 0.2
SHKBP1-221ENST00000599833 AHSA2Q719I0 299 aa16.28■□□□□ 0.2
SHKBP1-221ENST00000599833 FAM90A1Q86YD7 464 aa16.28■□□□□ 0.2
SHKBP1-221ENST00000599833 MUC20Q8N307 709 aaPredicted RBP16.28■□□□□ 0.2
SHKBP1-221ENST00000599833 OR10Z1Q8NGY1 313 aa16.28■□□□□ 0.2
SHKBP1-221ENST00000599833 OR52N1Q8NH53 320 aa16.28■□□□□ 0.2
SHKBP1-221ENST00000599833 LRRC29Q8WV35 223 aa16.28■□□□□ 0.2
SHKBP1-221ENST00000599833 TMEM186Q96B77 213 aa16.28■□□□□ 0.2
SHKBP1-221ENST00000599833 C10orf35Q96D05 121 aa16.28■□□□□ 0.2
SHKBP1-221ENST00000599833 POM121Q96HA1 1249 aa16.28■□□□□ 0.2
SHKBP1-221ENST00000599833 PDCD1LG2Q9BQ51 273 aa16.28■□□□□ 0.2
SHKBP1-221ENST00000599833 LPAR2Q9HBW0 351 aa16.28■□□□□ 0.2
SHKBP1-221ENST00000599833 IGKV1-27A0A075B6S5 117 aa16.27■□□□□ 0.2
SHKBP1-221ENST00000599833 ANKRD61A6NGH8 418 aa16.27■□□□□ 0.2
SHKBP1-221ENST00000599833 OOEPA6NGQ2 149 aa16.27■□□□□ 0.2
SHKBP1-221ENST00000599833 MRPL28Q13084 256 aaKnown RBP16.27■□□□□ 0.2
SHKBP1-221ENST00000599833 CDK5R1Q15078 307 aa16.27■□□□□ 0.2
SHKBP1-221ENST00000599833 DCDC5Q6ZRR9 648 aa16.27■□□□□ 0.2
SHKBP1-221ENST00000599833 KLHL36Q8N4N3 616 aa16.27■□□□□ 0.2
SHKBP1-221ENST00000599833 AQP3Q92482 292 aa16.27■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms