RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 ZNF573Q86YE8 665 aa13.06□□□□□ -0.32
SS18-215ENST00000580642 SAXO1Q8IYX7 474 aa13.06□□□□□ -0.32
SS18-215ENST00000580642 CELF2-AS1Q8N7Q2 184 aa13.06□□□□□ -0.32
SS18-215ENST00000580642 TBC1D15Q8TC07 691 aa13.06□□□□□ -0.32
SS18-215ENST00000580642 SLC25A28Q96A46 364 aa13.06□□□□□ -0.32
SS18-215ENST00000580642 CNTD2Q9H8S5 307 aa13.06□□□□□ -0.32
SS18-215ENST00000580642 C14orf119Q9NWQ9 140 aa13.06□□□□□ -0.32
SS18-215ENST00000580642 NKIRAS2Q9NYR9 191 aa13.06□□□□□ -0.32
SS18-215ENST00000580642 POU2F3Q9UKI9 436 aa13.06□□□□□ -0.32
SS18-215ENST00000580642 ZNF462Q96JM2 2506 aa13.06□□□□□ -0.32
SS18-215ENST00000580642 PLSCR5A0PG75 271 aa13.05□□□□□ -0.32
SS18-215ENST00000580642 APOA1P02647 267 aa13.05□□□□□ -0.32
SS18-215ENST00000580642 ARSBP15848 533 aa13.05□□□□□ -0.32
SS18-215ENST00000580642 RAB6AP20340 208 aa13.05□□□□□ -0.32
SS18-215ENST00000580642 PTBP1P26599 531 aaKnown RBP eCLIP13.05□□□□□ -0.32
SS18-215ENST00000580642 APOBEC3AP31941 199 aaPredicted RBP13.05□□□□□ -0.32
SS18-215ENST00000580642 ETV6P41212 452 aa13.05□□□□□ -0.32
SS18-215ENST00000580642 PTGFRP43088 359 aa13.05□□□□□ -0.32
SS18-215ENST00000580642 HES5Q5TA89 166 aa13.05□□□□□ -0.32
SS18-215ENST00000580642 METAP1DQ6UB28 335 aaPredicted RBP13.05□□□□□ -0.32
SS18-215ENST00000580642 OR2W3Q7Z3T1 314 aa13.05□□□□□ -0.32
SS18-215ENST00000580642 CDH24Q86UP0 819 aa13.05□□□□□ -0.32
SS18-215ENST00000580642 TMEM200AQ86VY9 491 aa13.05□□□□□ -0.32
SS18-215ENST00000580642 LRRC28Q86X40 367 aaPredicted RBP13.05□□□□□ -0.32
SS18-215ENST00000580642 PXT1Q8NFP0 134 aa13.05□□□□□ -0.32
SS18-215ENST00000580642 OR8S1Q8NH09 359 aa13.05□□□□□ -0.32
SS18-215ENST00000580642 TRMT10AQ8TBZ6 339 aaKnown RBP13.05□□□□□ -0.32
SS18-215ENST00000580642 RAB40AQ8WXH6 277 aa13.05□□□□□ -0.32
SS18-215ENST00000580642 FAM3DQ96BQ1 224 aa13.05□□□□□ -0.32
SS18-215ENST00000580642 GPER1Q99527 375 aa13.05□□□□□ -0.32
SS18-215ENST00000580642 IL36GQ9NZH8 169 aa13.05□□□□□ -0.32
SS18-215ENST00000580642 CRIM1Q9NZV1 1036 aa13.05□□□□□ -0.32
SS18-215ENST00000580642 DUSP13Q9UII6 198 aa13.05□□□□□ -0.32
SS18-215ENST00000580642 ZDHHC8Q9ULC8 765 aa13.05□□□□□ -0.32
SS18-215ENST00000580642 SMG1Q96Q15 3661 aaKnown RBP13.05□□□□□ -0.32
SS18-215ENST00000580642 ANKHD1Q8IWZ3 2542 aaKnown RBP13.05□□□□□ -0.32
SS18-215ENST00000580642 SMIM30A4D0T7 59 aa13.04□□□□□ -0.32
SS18-215ENST00000580642 CLEC18AA5D8T8 446 aa13.04□□□□□ -0.32
SS18-215ENST00000580642 SCGNO76038 276 aa13.04□□□□□ -0.32
SS18-215ENST00000580642 ADH4P08319 380 aa13.04□□□□□ -0.32
SS18-215ENST00000580642 ACAA1P09110 424 aaPredicted RBP13.04□□□□□ -0.32
SS18-215ENST00000580642 SLC2A2P11168 524 aaPredicted RBP13.04□□□□□ -0.32
SS18-215ENST00000580642 CA6P23280 308 aa13.04□□□□□ -0.32
SS18-215ENST00000580642 LOXP28300 417 aaPredicted RBP13.04□□□□□ -0.32
SS18-215ENST00000580642 SERPINF1P36955 418 aa13.04□□□□□ -0.32
SS18-215ENST00000580642 MMP15P51511 669 aa13.04□□□□□ -0.32
SS18-215ENST00000580642 OR8G1Q15617 311 aa13.04□□□□□ -0.32
SS18-215ENST00000580642 ADIPOQQ15848 244 aa13.04□□□□□ -0.32
SS18-215ENST00000580642 FAM209AQ5JX71 171 aa13.04□□□□□ -0.32
SS18-215ENST00000580642 CLEC18BQ6UXF7 455 aa13.04□□□□□ -0.32
SS18-215ENST00000580642 ANGPTL5Q86XS5 388 aa13.04□□□□□ -0.32
SS18-215ENST00000580642 CLEC18CQ8NCF0 446 aa13.04□□□□□ -0.32
SS18-215ENST00000580642 BHLHE23Q8NDY6 225 aa13.04□□□□□ -0.32
SS18-215ENST00000580642 HPSE2Q8WWQ2 592 aa13.04□□□□□ -0.32
SS18-215ENST00000580642 MRPS24Q96EL2 167 aaKnown RBP13.04□□□□□ -0.32
SS18-215ENST00000580642 RNF170Q96K19 258 aa13.04□□□□□ -0.32
SS18-215ENST00000580642 CEP19Q96LK0 163 aa13.04□□□□□ -0.32
SS18-215ENST00000580642 S100A13Q99584 98 aa13.04□□□□□ -0.32
SS18-215ENST00000580642 DHRS9Q9BPW9 319 aa13.04□□□□□ -0.32
SS18-215ENST00000580642 ADAT1Q9BUB4 502 aaKnown RBP13.04□□□□□ -0.32
SS18-215ENST00000580642 PKIBQ9C010 78 aa13.04□□□□□ -0.32
SS18-215ENST00000580642 CST11Q9H112 138 aa13.04□□□□□ -0.32
SS18-215ENST00000580642 ABCG5Q9H222 651 aa13.04□□□□□ -0.32
SS18-215ENST00000580642 CXXC4Q9H2H0 198 aa13.04□□□□□ -0.32
SS18-215ENST00000580642 PLK3Q9H4B4 646 aa13.04□□□□□ -0.32
SS18-215ENST00000580642 COMMD3Q9UBI1 195 aa13.04□□□□□ -0.32
SS18-215ENST00000580642 MRPS28Q9Y2Q9 187 aaKnown RBP13.04□□□□□ -0.32
SS18-215ENST00000580642 A0A0A6YYH2 397 aa13.03□□□□□ -0.32
SS18-215ENST00000580642 FAM230AA0A1W2PPH8 454 aa13.03□□□□□ -0.32
SS18-215ENST00000580642 LRP5LA4QPB2 252 aa13.03□□□□□ -0.32
SS18-215ENST00000580642 A6NJ64 397 aa13.03□□□□□ -0.32
SS18-215ENST00000580642 B9A039 149 aa13.03□□□□□ -0.32
SS18-215ENST00000580642 PRSS44E7EML9 344 aa13.03□□□□□ -0.32
SS18-215ENST00000580642 RGS5O15539 181 aa13.03□□□□□ -0.32
SS18-215ENST00000580642 PTBP3O95758 552 aaKnown RBP13.03□□□□□ -0.32
SS18-215ENST00000580642 CYB5AP00167 134 aa13.03□□□□□ -0.32
SS18-215ENST00000580642 OR4A8P0C604 315 aa13.03□□□□□ -0.32
SS18-215ENST00000580642 MPZP25189 248 aa13.03□□□□□ -0.32
SS18-215ENST00000580642 TALDO1P37837 337 aa13.03□□□□□ -0.32
SS18-215ENST00000580642 ZP1P60852 638 aa13.03□□□□□ -0.32
SS18-215ENST00000580642 ZNF45Q02386 682 aa13.03□□□□□ -0.32
SS18-215ENST00000580642 PDZK1IP1Q13113 114 aa13.03□□□□□ -0.32
SS18-215ENST00000580642 C2orf76Q3KRA6 126 aa13.03□□□□□ -0.32
SS18-215ENST00000580642 ZNF672Q499Z4 452 aaPredicted RBP13.03□□□□□ -0.32
SS18-215ENST00000580642 UBE2NLQ5JXB2 153 aa13.03□□□□□ -0.32
SS18-215ENST00000580642 SPANXN2Q5MJ10 180 aa13.03□□□□□ -0.32
SS18-215ENST00000580642 BAIAP2L2Q6UXY1 529 aa13.03□□□□□ -0.32
SS18-215ENST00000580642 MKXQ8IYA7 352 aa13.03□□□□□ -0.32
SS18-215ENST00000580642 OR4D6Q8NGJ1 314 aa13.03□□□□□ -0.32
SS18-215ENST00000580642 KCNG3Q8TAE7 436 aa13.03□□□□□ -0.32
SS18-215ENST00000580642 MRPL37Q9BZE1 423 aaKnown RBP13.03□□□□□ -0.32
SS18-215ENST00000580642 HMG20AQ9NP66 347 aa13.03□□□□□ -0.32
SS18-215ENST00000580642 OR5V1Q9UGF6 321 aa13.03□□□□□ -0.32
SS18-215ENST00000580642 RAB22AQ9UL26 194 aa13.03□□□□□ -0.32
SS18-215ENST00000580642 HCFC1P51610 2035 aa13.03□□□□□ -0.32
SS18-215ENST00000580642 ZNF732B4DXR9 585 aa13.02□□□□□ -0.33
SS18-215ENST00000580642 E7EQL1 145 aa13.02□□□□□ -0.33
SS18-215ENST00000580642 J3QKU1 62 aa13.02□□□□□ -0.33
SS18-215ENST00000580642 CTDSP2O14595 271 aa13.02□□□□□ -0.33
SS18-215ENST00000580642 LDLRAD4O15165 306 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms