RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 CFL1P23528 166 aaKnown RBP5.56□□□□□ -1.52
VPS53-213ENST00000572334 SLC6A6P31641 620 aa5.56□□□□□ -1.52
VPS53-213ENST00000572334 PYCR1P32322 319 aa5.56□□□□□ -1.52
VPS53-213ENST00000572334 MSX2P35548 267 aaPredicted RBP5.56□□□□□ -1.52
VPS53-213ENST00000572334 CFHR2P36980 270 aa5.56□□□□□ -1.52
VPS53-213ENST00000572334 MTNR1AP48039 350 aa5.56□□□□□ -1.52
VPS53-213ENST00000572334 CENPAP49450 140 aa5.56□□□□□ -1.52
VPS53-213ENST00000572334 ALDH3A2P51648 485 aa5.56□□□□□ -1.52
VPS53-213ENST00000572334 RAB14P61106 215 aa5.56□□□□□ -1.52
VPS53-213ENST00000572334 B2MP61769 119 aa5.56□□□□□ -1.52
VPS53-213ENST00000572334 DEFA6Q01524 100 aa5.56□□□□□ -1.52
VPS53-213ENST00000572334 OCLNQ16625 522 aa5.56□□□□□ -1.52
VPS53-213ENST00000572334 PCK2Q16822 640 aa5.56□□□□□ -1.52
VPS53-213ENST00000572334 GLYATL3Q5SZD4 288 aa5.56□□□□□ -1.52
VPS53-213ENST00000572334 SFRP4Q6FHJ7 346 aaPredicted RBP5.56□□□□□ -1.52
VPS53-213ENST00000572334 LCN8Q6JVE9 175 aa5.56□□□□□ -1.52
VPS53-213ENST00000572334 PGBD2Q6P3X8 592 aa5.56□□□□□ -1.52
VPS53-213ENST00000572334 DUX4L9Q6RFH8 374 aaPredicted RBP5.56□□□□□ -1.52
VPS53-213ENST00000572334 ZNF620Q6ZNG0 422 aa5.56□□□□□ -1.52
VPS53-213ENST00000572334 ZNF826PQ6ZT77 177 aa5.56□□□□□ -1.52
VPS53-213ENST00000572334 SPATC1Q76KD6 591 aa5.56□□□□□ -1.52
VPS53-213ENST00000572334 KCTD20Q7Z5Y7 419 aa5.56□□□□□ -1.52
VPS53-213ENST00000572334 WDR86Q86TI4 376 aa5.56□□□□□ -1.52
VPS53-213ENST00000572334 NOXA1Q86UR1 476 aa5.56□□□□□ -1.52
VPS53-213ENST00000572334 CBR4Q8N4T8 237 aa5.56□□□□□ -1.52
VPS53-213ENST00000572334 GCSAMQ8N6F7 178 aa5.56□□□□□ -1.52
VPS53-213ENST00000572334 KIR3DL3Q8N743 410 aa5.56□□□□□ -1.52
VPS53-213ENST00000572334 OR8D4Q8NGM9 314 aa5.56□□□□□ -1.52
VPS53-213ENST00000572334 MCFD2Q8NI22 146 aa5.56□□□□□ -1.52
VPS53-213ENST00000572334 FANK1Q8TC84 345 aa5.56□□□□□ -1.52
VPS53-213ENST00000572334 LRRC20Q8TCA0 184 aa5.56□□□□□ -1.52
VPS53-213ENST00000572334 MUL1Q969V5 352 aa5.56□□□□□ -1.52
VPS53-213ENST00000572334 ERGIC1Q969X5 290 aa5.56□□□□□ -1.52
VPS53-213ENST00000572334 PYURFQ96I23 114 aa5.56□□□□□ -1.52
VPS53-213ENST00000572334 PITX2Q99697 317 aa5.56□□□□□ -1.52
VPS53-213ENST00000572334 ATF6BQ99941 703 aa5.56□□□□□ -1.52
VPS53-213ENST00000572334 CITED1Q99966 193 aa5.56□□□□□ -1.52
VPS53-213ENST00000572334 CHIAQ9BZP6 476 aa5.56□□□□□ -1.52
VPS53-213ENST00000572334 SIRPDQ9H106 197 aa5.56□□□□□ -1.52
VPS53-213ENST00000572334 PPA2Q9H2U2 334 aa5.56□□□□□ -1.52
VPS53-213ENST00000572334 PPP1R3EQ9H7J1 279 aa5.56□□□□□ -1.52
VPS53-213ENST00000572334 MBD2Q9UBB5 411 aa5.56□□□□□ -1.52
VPS53-213ENST00000572334 DUX4Q9UBX2 424 aa5.56□□□□□ -1.52
VPS53-213ENST00000572334 CLN8Q9UBY8 286 aa5.56□□□□□ -1.52
VPS53-213ENST00000572334 CD300AQ9UGN4 299 aa5.56□□□□□ -1.52
VPS53-213ENST00000572334 AURKCQ9UQB9 309 aa5.56□□□□□ -1.52
VPS53-213ENST00000572334 POLR1DQ9Y2S0 133 aa5.56□□□□□ -1.52
VPS53-213ENST00000572334 V9GYQ6 96 aa5.56□□□□□ -1.52
VPS53-213ENST00000572334 TVP23AA6NH52 213 aa5.55□□□□□ -1.52
VPS53-213ENST00000572334 LRRC30A6NM36 301 aa5.55□□□□□ -1.52
VPS53-213ENST00000572334 ZNF879B4DU55 563 aa5.55□□□□□ -1.52
VPS53-213ENST00000572334 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP5.55□□□□□ -1.52
VPS53-213ENST00000572334 M0R135 149 aa5.55□□□□□ -1.52
VPS53-213ENST00000572334 LGALS8O00214 317 aa5.55□□□□□ -1.52
VPS53-213ENST00000572334 ENSAO43768 121 aaKnown RBP5.55□□□□□ -1.52
VPS53-213ENST00000572334 NDUFA7O95182 113 aa5.55□□□□□ -1.52
VPS53-213ENST00000572334 GADD45GO95257 159 aa5.55□□□□□ -1.52
VPS53-213ENST00000572334 RENP00797 406 aa5.55□□□□□ -1.52
VPS53-213ENST00000572334 LCATP04180 440 aa5.55□□□□□ -1.52
VPS53-213ENST00000572334 PRKACAP17612 351 aa5.55□□□□□ -1.52
VPS53-213ENST00000572334 AMY2BP19961 511 aa5.55□□□□□ -1.52
VPS53-213ENST00000572334 TALDO1P37837 337 aa5.55□□□□□ -1.52
VPS53-213ENST00000572334 CBX5P45973 191 aa5.55□□□□□ -1.52
VPS53-213ENST00000572334 HMGA2P52926 109 aa5.55□□□□□ -1.52
VPS53-213ENST00000572334 IFITM2Q01629 132 aa5.55□□□□□ -1.52
VPS53-213ENST00000572334 SPIBQ01892 262 aa5.55□□□□□ -1.52
VPS53-213ENST00000572334 TSPAN31Q12999 210 aa5.55□□□□□ -1.52
VPS53-213ENST00000572334 ECH1Q13011 328 aa5.55□□□□□ -1.52
VPS53-213ENST00000572334 MRPL28Q13084 256 aaKnown RBP5.55□□□□□ -1.52
VPS53-213ENST00000572334 FAM98BQ52LJ0 330 aaKnown RBP5.55□□□□□ -1.52
VPS53-213ENST00000572334 SLC35F1Q5T1Q4 408 aa5.55□□□□□ -1.52
VPS53-213ENST00000572334 DMRTA1Q5VZB9 504 aa5.55□□□□□ -1.52
VPS53-213ENST00000572334 ZNF770Q6IQ21 691 aaPredicted RBP5.55□□□□□ -1.52
VPS53-213ENST00000572334 DNM1P34Q6PK57 102 aa5.55□□□□□ -1.52
VPS53-213ENST00000572334 FIP1L1Q6UN15 594 aaKnown RBP5.55□□□□□ -1.52
VPS53-213ENST00000572334 ZNF782Q6ZMW2 699 aaPredicted RBP5.55□□□□□ -1.52
VPS53-213ENST00000572334 PGAP1Q75T13 922 aa5.55□□□□□ -1.52
VPS53-213ENST00000572334 PRSS45Q7RTY3 260 aa5.55□□□□□ -1.52
VPS53-213ENST00000572334 FAM90A1Q86YD7 464 aa5.55□□□□□ -1.52
VPS53-213ENST00000572334 ZDHHC13Q8IUH4 622 aa5.55□□□□□ -1.52
VPS53-213ENST00000572334 LYSMD2Q8IV50 215 aa5.55□□□□□ -1.52
VPS53-213ENST00000572334 C1orf87Q8N0U7 546 aa5.55□□□□□ -1.52
VPS53-213ENST00000572334 CYB561A3Q8NBI2 242 aa5.55□□□□□ -1.52
VPS53-213ENST00000572334 PAPD5Q8NDF8 572 aaKnown RBP5.55□□□□□ -1.52
VPS53-213ENST00000572334 BPIFB6Q8NFQ5 453 aa5.55□□□□□ -1.52
VPS53-213ENST00000572334 OR9Q2Q8NGE9 314 aa5.55□□□□□ -1.52
VPS53-213ENST00000572334 OR51L1Q8NGJ5 315 aa5.55□□□□□ -1.52
VPS53-213ENST00000572334 OR10Z1Q8NGY1 313 aa5.55□□□□□ -1.52
VPS53-213ENST00000572334 SPSB4Q96A44 273 aa5.55□□□□□ -1.52
VPS53-213ENST00000572334 ZNF799Q96GE5 643 aa5.55□□□□□ -1.52
VPS53-213ENST00000572334 WDFY2Q96P53 400 aa5.55□□□□□ -1.52
VPS53-213ENST00000572334 RBM4BQ9BQ04 359 aaKnown RBP5.55□□□□□ -1.52
VPS53-213ENST00000572334 IFT27Q9BW83 186 aa5.55□□□□□ -1.52
VPS53-213ENST00000572334 FUNDC2Q9BWH2 189 aa5.55□□□□□ -1.52
VPS53-213ENST00000572334 HCAR1Q9BXC0 346 aa5.55□□□□□ -1.52
VPS53-213ENST00000572334 NMNAT2Q9BZQ4 307 aa5.55□□□□□ -1.52
VPS53-213ENST00000572334 SEMA6AQ9H2E6 1030 aa5.55□□□□□ -1.52
VPS53-213ENST00000572334 EGLN3Q9H6Z9 239 aa5.55□□□□□ -1.52
VPS53-213ENST00000572334 TNFRSF19Q9NS68 423 aa5.55□□□□□ -1.52
VPS53-213ENST00000572334 RNF7Q9UBF6 113 aa5.55□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms