RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 CHCHD3Q9NX63 227 aaKnown RBP10.9□□□□□ -0.66
CLK3-224ENST00000568605 ERVK13-1Q9NX77 482 aa10.9□□□□□ -0.66
CLK3-224ENST00000568605 OR5V1Q9UGF6 321 aa10.9□□□□□ -0.66
CLK3-224ENST00000568605 MYRFQ9Y2G1 1151 aa10.9□□□□□ -0.66
CLK3-224ENST00000568605 DSCAML1Q8TD84 2053 aa10.89□□□□□ -0.67
CLK3-224ENST00000568605 ANKRD61A6NGH8 418 aa10.89□□□□□ -0.67
CLK3-224ENST00000568605 F5H0A9 414 aaPredicted RBP10.89□□□□□ -0.67
CLK3-224ENST00000568605 J3QLI3 93 aa10.89□□□□□ -0.67
CLK3-224ENST00000568605 SERPINA3P01011 423 aa10.89□□□□□ -0.67
CLK3-224ENST00000568605 PSMB10P40306 273 aa10.89□□□□□ -0.67
CLK3-224ENST00000568605 PMELP40967 661 aa10.89□□□□□ -0.67
CLK3-224ENST00000568605 HSPA13P48723 471 aa10.89□□□□□ -0.67
CLK3-224ENST00000568605 GPM6AP51674 278 aa10.89□□□□□ -0.67
CLK3-224ENST00000568605 GBX2P52951 348 aaPredicted RBP10.89□□□□□ -0.67
CLK3-224ENST00000568605 GNB2P62879 340 aa10.89□□□□□ -0.67
CLK3-224ENST00000568605 CSNK2BP67870 215 aa10.89□□□□□ -0.67
CLK3-224ENST00000568605 SCGB2A2Q13296 93 aa10.89□□□□□ -0.67
CLK3-224ENST00000568605 CNN3Q15417 329 aaKnown RBP10.89□□□□□ -0.67
CLK3-224ENST00000568605 SMN1Q16637 294 aaKnown RBP10.89□□□□□ -0.67
CLK3-224ENST00000568605 MICBQ29980 383 aa10.89□□□□□ -0.67
CLK3-224ENST00000568605 FAM120AOSQ5T036 256 aa10.89□□□□□ -0.67
CLK3-224ENST00000568605 DCAF12L2Q5VW00 463 aa10.89□□□□□ -0.67
CLK3-224ENST00000568605 WDR82Q6UXN9 313 aa10.89□□□□□ -0.67
CLK3-224ENST00000568605 TMPRSS11AQ6ZMR5 421 aa10.89□□□□□ -0.67
CLK3-224ENST00000568605 ZNF826PQ6ZT77 177 aa10.89□□□□□ -0.67
CLK3-224ENST00000568605 MOB3CQ70IA8 216 aa10.89□□□□□ -0.67
CLK3-224ENST00000568605 WDR86Q86TI4 376 aa10.89□□□□□ -0.67
CLK3-224ENST00000568605 PRSS35Q8N3Z0 413 aa10.89□□□□□ -0.67
CLK3-224ENST00000568605 OR14K1Q8NGZ2 314 aa10.89□□□□□ -0.67
CLK3-224ENST00000568605 PPP1R14AQ96A00 147 aa10.89□□□□□ -0.67
CLK3-224ENST00000568605 PELI1Q96FA3 418 aa10.89□□□□□ -0.67
CLK3-224ENST00000568605 TMEM246Q9BRR3 403 aa10.89□□□□□ -0.67
CLK3-224ENST00000568605 SSBP3Q9BWW4 388 aaPredicted RBP10.89□□□□□ -0.67
CLK3-224ENST00000568605 COMMD4Q9H0A8 199 aa10.89□□□□□ -0.67
CLK3-224ENST00000568605 TMEM165Q9HC07 324 aa10.89□□□□□ -0.67
CLK3-224ENST00000568605 NKX1-2Q9UD57 310 aaPredicted RBP10.89□□□□□ -0.67
CLK3-224ENST00000568605 HHLA2Q9UM44 414 aa10.89□□□□□ -0.67
CLK3-224ENST00000568605 DIMT1Q9UNQ2 313 aaKnown RBP10.89□□□□□ -0.67
CLK3-224ENST00000568605 SLC7A11Q9UPY5 501 aa10.89□□□□□ -0.67
CLK3-224ENST00000568605 EXOSC1Q9Y3B2 195 aaKnown RBP10.89□□□□□ -0.67
CLK3-224ENST00000568605 PPIAL4CA0A0B4J2A2 164 aa10.88□□□□□ -0.67
CLK3-224ENST00000568605 A0A1B0GTI1 187 aa10.88□□□□□ -0.67
CLK3-224ENST00000568605 EFCAB10A6NFE3 127 aa10.88□□□□□ -0.67
CLK3-224ENST00000568605 TMEM212A6NML5 194 aa10.88□□□□□ -0.67
CLK3-224ENST00000568605 SRRM5B3KS81 715 aa10.88□□□□□ -0.67
CLK3-224ENST00000568605 ZNF732B4DXR9 585 aa10.88□□□□□ -0.67
CLK3-224ENST00000568605 C3orf80F5H4A9 247 aa10.88□□□□□ -0.67
CLK3-224ENST00000568605 CDIPTO14735 213 aa10.88□□□□□ -0.67
CLK3-224ENST00000568605 PLPP2O43688 288 aa10.88□□□□□ -0.67
CLK3-224ENST00000568605 ZNF205O95201 554 aa10.88□□□□□ -0.67
CLK3-224ENST00000568605 ISG15P05161 165 aa10.88□□□□□ -0.67
CLK3-224ENST00000568605 FAM157CP0CG43 387 aa10.88□□□□□ -0.67
CLK3-224ENST00000568605 PIPP12273 146 aaPredicted RBP10.88□□□□□ -0.67
CLK3-224ENST00000568605 MUC1P15941 1255 aaPredicted RBP10.88□□□□□ -0.67
CLK3-224ENST00000568605 ZNF20P17024 532 aa10.88□□□□□ -0.67
CLK3-224ENST00000568605 HOXB4P17483 251 aaPredicted RBP10.88□□□□□ -0.67
CLK3-224ENST00000568605 SRD5A1P18405 259 aa10.88□□□□□ -0.67
CLK3-224ENST00000568605 CD80P33681 288 aa10.88□□□□□ -0.67
CLK3-224ENST00000568605 THBS2P35442 1172 aa10.88□□□□□ -0.67
CLK3-224ENST00000568605 KIR3DL2P43630 455 aa10.88□□□□□ -0.67
CLK3-224ENST00000568605 PITPNBP48739 271 aa10.88□□□□□ -0.67
CLK3-224ENST00000568605 NPY4RP50391 375 aa10.88□□□□□ -0.67
CLK3-224ENST00000568605 AQP4P55087 323 aa10.88□□□□□ -0.67
CLK3-224ENST00000568605 LCN2P80188 198 aa10.88□□□□□ -0.67
CLK3-224ENST00000568605 HNRNPA0Q13151 305 aaKnown RBP10.88□□□□□ -0.67
CLK3-224ENST00000568605 ALKBH1Q13686 389 aaKnown RBP10.88□□□□□ -0.67
CLK3-224ENST00000568605 FAM201AQ5SY85 155 aa10.88□□□□□ -0.67
CLK3-224ENST00000568605 TMEM42Q69YG0 159 aa10.88□□□□□ -0.67
CLK3-224ENST00000568605 GCSAMQ8N6F7 178 aa10.88□□□□□ -0.67
CLK3-224ENST00000568605 ZNF676Q8N7Q3 588 aa10.88□□□□□ -0.67
CLK3-224ENST00000568605 SCCPDHQ8NBX0 429 aa10.88□□□□□ -0.67
CLK3-224ENST00000568605 PP6455Q8WZ26 134 aa10.88□□□□□ -0.67
CLK3-224ENST00000568605 C12orf43Q96C57 262 aaKnown RBP10.88□□□□□ -0.67
CLK3-224ENST00000568605 POM121Q96HA1 1249 aa10.88□□□□□ -0.67
CLK3-224ENST00000568605 CHST5Q9GZS9 411 aa10.88□□□□□ -0.67
CLK3-224ENST00000568605 CNOT2Q9NZN8 540 aaKnown RBP10.88□□□□□ -0.67
CLK3-224ENST00000568605 CLN8Q9UBY8 286 aa10.88□□□□□ -0.67
CLK3-224ENST00000568605 POLDIP2Q9Y2S7 368 aa10.88□□□□□ -0.67
CLK3-224ENST00000568605 CAB39Q9Y376 341 aaPredicted RBP10.88□□□□□ -0.67
CLK3-224ENST00000568605 ANK3Q12955 4377 aaKnown RBP10.88□□□□□ -0.67
CLK3-224ENST00000568605 NKX6-3A6NJ46 265 aa10.87□□□□□ -0.67
CLK3-224ENST00000568605 IFNA2P01563 188 aa10.87□□□□□ -0.67
CLK3-224ENST00000568605 GNAO1P09471 354 aa10.87□□□□□ -0.67
CLK3-224ENST00000568605 OCM2P0CE71 109 aa10.87□□□□□ -0.67
CLK3-224ENST00000568605 OCMP0CE72 109 aaPredicted RBP10.87□□□□□ -0.67
CLK3-224ENST00000568605 CFHR2P36980 270 aa10.87□□□□□ -0.67
CLK3-224ENST00000568605 SRP14P37108 136 aaKnown RBP10.87□□□□□ -0.67
CLK3-224ENST00000568605 TGM4P49221 684 aa10.87□□□□□ -0.67
CLK3-224ENST00000568605 FAM76BQ5HYJ3 339 aa10.87□□□□□ -0.67
CLK3-224ENST00000568605 TEX36Q5VZQ5 186 aa10.87□□□□□ -0.67
CLK3-224ENST00000568605 SFRP4Q6FHJ7 346 aaPredicted RBP10.87□□□□□ -0.67
CLK3-224ENST00000568605 SLC36A1Q7Z2H8 476 aa10.87□□□□□ -0.67
CLK3-224ENST00000568605 ZNF573Q86YE8 665 aa10.87□□□□□ -0.67
CLK3-224ENST00000568605 DEFB108BQ8NET1 73 aa10.87□□□□□ -0.67
CLK3-224ENST00000568605 ZNF671Q8TAW3 534 aa10.87□□□□□ -0.67
CLK3-224ENST00000568605 TFAP2CQ92754 450 aa10.87□□□□□ -0.67
CLK3-224ENST00000568605 RPL3LQ92901 407 aaKnown RBP10.87□□□□□ -0.67
CLK3-224ENST00000568605 TMEM80Q96HE8 168 aa10.87□□□□□ -0.67
CLK3-224ENST00000568605 PPP1R3EQ9H7J1 279 aa10.87□□□□□ -0.67
CLK3-224ENST00000568605 NEK6Q9HC98 313 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms