RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 WDFY1Q8IWB7 410 aa11.68□□□□□ -0.54
VPS4A-204ENST00000566354 ZNF101Q8IZC7 436 aa11.68□□□□□ -0.54
VPS4A-204ENST00000566354 ARRDC1Q8N5I2 433 aa11.68□□□□□ -0.54
VPS4A-204ENST00000566354 PRR7Q8TB68 274 aa11.68□□□□□ -0.54
VPS4A-204ENST00000566354 PAQR8Q8TEZ7 354 aa11.68□□□□□ -0.54
VPS4A-204ENST00000566354 MED29Q9NX70 200 aa11.68□□□□□ -0.54
VPS4A-204ENST00000566354 ANAPC10Q9UM13 185 aa11.68□□□□□ -0.54
VPS4A-204ENST00000566354 GPR132Q9UNW8 380 aa11.68□□□□□ -0.54
VPS4A-204ENST00000566354 A0A0B4J2A0 478 aa11.68□□□□□ -0.54
VPS4A-204ENST00000566354 PROB1E7EW31 1015 aa11.68□□□□□ -0.54
VPS4A-204ENST00000566354 KCNAB3O43448 404 aa11.68□□□□□ -0.54
VPS4A-204ENST00000566354 SGCEO43556 437 aa11.68□□□□□ -0.54
VPS4A-204ENST00000566354 C17orf67Q0P5P2 114 aa11.68□□□□□ -0.54
VPS4A-204ENST00000566354 NKAPLQ5M9Q1 402 aa11.68□□□□□ -0.54
VPS4A-204ENST00000566354 HAGHLQ6PII5 290 aaPredicted RBP11.68□□□□□ -0.54
VPS4A-204ENST00000566354 LDLRAD3Q86YD5 345 aa11.68□□□□□ -0.54
VPS4A-204ENST00000566354 SPAG16Q8N0X2 631 aa11.68□□□□□ -0.54
VPS4A-204ENST00000566354 LPAR5Q9H1C0 372 aa11.68□□□□□ -0.54
VPS4A-204ENST00000566354 SLC26A1Q9H2B4 701 aa11.68□□□□□ -0.54
VPS4A-204ENST00000566354 RAB18Q9NP72 206 aa11.68□□□□□ -0.54
VPS4A-204ENST00000566354 CYTL1Q9NRR1 136 aa11.68□□□□□ -0.54
VPS4A-204ENST00000566354 SHPKQ9UHJ6 478 aa11.68□□□□□ -0.54
VPS4A-204ENST00000566354 CARHSP1Q9Y2V2 147 aaKnown RBP11.68□□□□□ -0.54
VPS4A-204ENST00000566354 CCDC187A0A096LP49 1063 aa11.67□□□□□ -0.54
VPS4A-204ENST00000566354 TNFSF12-TNFSF13A0A0A6YY99 330 aa11.67□□□□□ -0.54
VPS4A-204ENST00000566354 C9orf172C9J069 976 aa11.67□□□□□ -0.54
VPS4A-204ENST00000566354 ACTL6AO96019 429 aa11.67□□□□□ -0.54
VPS4A-204ENST00000566354 ZNF20P17024 532 aa11.67□□□□□ -0.54
VPS4A-204ENST00000566354 ADCYAP1P18509 176 aa11.67□□□□□ -0.54
VPS4A-204ENST00000566354 AKR1C2P52895 323 aa11.67□□□□□ -0.54
VPS4A-204ENST00000566354 AKR1C1Q04828 323 aa11.67□□□□□ -0.54
VPS4A-204ENST00000566354 FAM189A2Q15884 450 aa11.67□□□□□ -0.54
VPS4A-204ENST00000566354 GUCA2BQ16661 112 aa11.67□□□□□ -0.54
VPS4A-204ENST00000566354 SWI5Q1ZZU3 235 aa11.67□□□□□ -0.54
VPS4A-204ENST00000566354 MICBQ29980 383 aa11.67□□□□□ -0.54
VPS4A-204ENST00000566354 KCNG3Q8TAE7 436 aa11.67□□□□□ -0.54
VPS4A-204ENST00000566354 DDIT4LQ96D03 193 aa11.67□□□□□ -0.54
VPS4A-204ENST00000566354 RAB3CQ96E17 227 aa11.67□□□□□ -0.54
VPS4A-204ENST00000566354 C5orf34Q96MH7 638 aa11.67□□□□□ -0.54
VPS4A-204ENST00000566354 CNTNAP3BQ96NU0 1288 aa11.67□□□□□ -0.54
VPS4A-204ENST00000566354 SCGB3A2Q96PL1 93 aa11.67□□□□□ -0.54
VPS4A-204ENST00000566354 TAAR9Q96RI9 348 aa11.67□□□□□ -0.54
VPS4A-204ENST00000566354 CRB3Q9BUF7 120 aa11.67□□□□□ -0.54
VPS4A-204ENST00000566354 MLXQ9UH92 298 aa11.67□□□□□ -0.54
VPS4A-204ENST00000566354 B3GALT5Q9Y2C3 310 aa11.67□□□□□ -0.54
VPS4A-204ENST00000566354 DKK1O94907 266 aa11.66□□□□□ -0.54
VPS4A-204ENST00000566354 SFT2D2O95562 160 aa11.66□□□□□ -0.54
VPS4A-204ENST00000566354 SUMO3P55854 103 aaPredicted RBP11.66□□□□□ -0.54
VPS4A-204ENST00000566354 TAS2R60P59551 318 aa11.66□□□□□ -0.54
VPS4A-204ENST00000566354 BLOC1S1P78537 153 aa11.66□□□□□ -0.54
VPS4A-204ENST00000566354 FOXK1P85037 733 aa11.66□□□□□ -0.54
VPS4A-204ENST00000566354 HFEQ30201 348 aa11.66□□□□□ -0.54
VPS4A-204ENST00000566354 GLIPR1L1Q6UWM5 242 aa11.66□□□□□ -0.54
VPS4A-204ENST00000566354 DRAM2Q6UX65 266 aa11.66□□□□□ -0.54
VPS4A-204ENST00000566354 TIPARPQ7Z3E1 657 aaKnown RBP11.66□□□□□ -0.54
VPS4A-204ENST00000566354 ANKRD37Q7Z713 158 aa11.66□□□□□ -0.54
VPS4A-204ENST00000566354 NAA40Q86UY6 237 aa11.66□□□□□ -0.54
VPS4A-204ENST00000566354 ZSCAN4Q8NAM6 433 aaPredicted RBP11.66□□□□□ -0.54
VPS4A-204ENST00000566354 OR10S1Q8NGN2 331 aa11.66□□□□□ -0.54
VPS4A-204ENST00000566354 RRNAD1Q96FB5 475 aaKnown RBP11.66□□□□□ -0.54
VPS4A-204ENST00000566354 NICN1Q9BSH3 213 aa11.66□□□□□ -0.54
VPS4A-204ENST00000566354 C5orf66Q9H5L9 145 aa11.66□□□□□ -0.54
VPS4A-204ENST00000566354 MOB1AQ9H8S9 216 aa11.66□□□□□ -0.54
VPS4A-204ENST00000566354 MMP26Q9NRE1 261 aa11.66□□□□□ -0.54
VPS4A-204ENST00000566354 FOXJ2Q9P0K8 574 aa11.66□□□□□ -0.54
VPS4A-204ENST00000566354 ASPMQ8IZT6 3477 aa11.66□□□□□ -0.54
VPS4A-204ENST00000566354 H0YIZ8 118 aa11.66□□□□□ -0.54
VPS4A-204ENST00000566354 LYL1P12980 280 aa11.66□□□□□ -0.54
VPS4A-204ENST00000566354 HIST1H1DP16402 221 aaKnown RBP11.66□□□□□ -0.54
VPS4A-204ENST00000566354 LAP3P28838 519 aa11.66□□□□□ -0.54
VPS4A-204ENST00000566354 BIDP55957 195 aa11.66□□□□□ -0.54
VPS4A-204ENST00000566354 THEM4Q5T1C6 240 aa11.66□□□□□ -0.54
VPS4A-204ENST00000566354 DHRS7BQ6IAN0 325 aaPredicted RBP11.66□□□□□ -0.54
VPS4A-204ENST00000566354 PRSS54Q6PEW0 395 aa11.66□□□□□ -0.54
VPS4A-204ENST00000566354 TMEM88Q6PEY1 159 aa11.66□□□□□ -0.54
VPS4A-204ENST00000566354 C16orf54Q6UWD8 224 aa11.66□□□□□ -0.54
VPS4A-204ENST00000566354 IL34Q6ZMJ4 242 aa11.66□□□□□ -0.54
VPS4A-204ENST00000566354 PGAP1Q75T13 922 aa11.66□□□□□ -0.54
VPS4A-204ENST00000566354 OR51E1Q8TCB6 317 aa11.66□□□□□ -0.54
VPS4A-204ENST00000566354 TMED6Q8WW62 240 aa11.66□□□□□ -0.54
VPS4A-204ENST00000566354 TMEM41AQ96HV5 264 aa11.66□□□□□ -0.54
VPS4A-204ENST00000566354 GPR61Q9BZJ8 451 aa11.66□□□□□ -0.54
VPS4A-204ENST00000566354 ESRP2Q9H6T0 727 aaKnown RBP11.66□□□□□ -0.54
VPS4A-204ENST00000566354 KLHL13Q9P2N7 655 aa11.66□□□□□ -0.54
VPS4A-204ENST00000566354 MRPS28Q9Y2Q9 187 aaKnown RBP11.66□□□□□ -0.54
VPS4A-204ENST00000566354 SPTBN2O15020 2390 aa11.66□□□□□ -0.54
VPS4A-204ENST00000566354 FAM157CP0CG43 387 aa11.65□□□□□ -0.54
VPS4A-204ENST00000566354 PVALBP20472 110 aaPredicted RBP11.65□□□□□ -0.54
VPS4A-204ENST00000566354 SLC6A9P48067 706 aa11.65□□□□□ -0.54
VPS4A-204ENST00000566354 TMEM95Q3KNT9 176 aa11.65□□□□□ -0.54
VPS4A-204ENST00000566354 PLAC9Q5JTB6 97 aa11.65□□□□□ -0.54
VPS4A-204ENST00000566354 H3F3CQ6NXT2 135 aa11.65□□□□□ -0.54
VPS4A-204ENST00000566354 CLEC18BQ6UXF7 455 aa11.65□□□□□ -0.54
VPS4A-204ENST00000566354 TMEM104Q8NE00 496 aa11.65□□□□□ -0.54
VPS4A-204ENST00000566354 RNASE11Q8TAA1 199 aaKnown RBP11.65□□□□□ -0.54
VPS4A-204ENST00000566354 OCSTAMPQ9BR26 566 aa11.65□□□□□ -0.54
VPS4A-204ENST00000566354 EMC6Q9BV81 110 aa11.65□□□□□ -0.54
VPS4A-204ENST00000566354 DDA1Q9BW61 102 aa11.65□□□□□ -0.54
VPS4A-204ENST00000566354 MRPL13Q9BYD1 178 aaKnown RBP11.65□□□□□ -0.54
VPS4A-204ENST00000566354 DCHS1Q96JQ0 3298 aa11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms