RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 NPRL2Q8WTW4 380 aa18.36■□□□□ 0.53
SNX1-210ENST00000560260 RNF170Q96K19 258 aa18.36■□□□□ 0.53
SNX1-210ENST00000560260 ISYNA1Q9NPH2 558 aa18.36■□□□□ 0.53
SNX1-210ENST00000560260 DLL4Q9NR61 685 aa18.36■□□□□ 0.53
SNX1-210ENST00000560260 TMEM106BQ9NUM4 274 aa18.36■□□□□ 0.53
SNX1-210ENST00000560260 C14orf119Q9NWQ9 140 aa18.36■□□□□ 0.53
SNX1-210ENST00000560260 CYB5R3P00387 301 aaPredicted RBP18.35■□□□□ 0.53
SNX1-210ENST00000560260 HSMCR30P0CW71 290 aa18.35■□□□□ 0.53
SNX1-210ENST00000560260 HFEQ30201 348 aa18.35■□□□□ 0.53
SNX1-210ENST00000560260 LIPKQ5VXJ0 399 aa18.35■□□□□ 0.53
SNX1-210ENST00000560260 SVOPQ8N4V2 548 aa18.35■□□□□ 0.53
SNX1-210ENST00000560260 Q8TCH9 128 aa18.35■□□□□ 0.53
SNX1-210ENST00000560260 PP6455Q8WZ26 134 aa18.35■□□□□ 0.53
SNX1-210ENST00000560260 RPL3LQ92901 407 aaKnown RBP18.35■□□□□ 0.53
SNX1-210ENST00000560260 ORAI1Q96D31 301 aa18.35■□□□□ 0.53
SNX1-210ENST00000560260 MGLLQ99685 303 aa18.35■□□□□ 0.53
SNX1-210ENST00000560260 TLNRD1Q9H1K6 362 aa18.35■□□□□ 0.53
SNX1-210ENST00000560260 PQLC2LA1A4F0 135 aa18.34■□□□□ 0.53
SNX1-210ENST00000560260 ZNF732B4DXR9 585 aa18.34■□□□□ 0.53
SNX1-210ENST00000560260 NDUFS8O00217 210 aa18.34■□□□□ 0.53
SNX1-210ENST00000560260 TPBGQ13641 420 aa18.34■□□□□ 0.53
SNX1-210ENST00000560260 INSL4Q14641 139 aa18.34■□□□□ 0.53
SNX1-210ENST00000560260 YIF1BQ5BJH7 314 aa18.34■□□□□ 0.53
SNX1-210ENST00000560260 FAM76BQ5HYJ3 339 aa18.34■□□□□ 0.53
SNX1-210ENST00000560260 UBE2UQ5VVX9 321 aa18.34■□□□□ 0.53
SNX1-210ENST00000560260 SPNS3Q6ZMD2 512 aa18.34■□□□□ 0.53
SNX1-210ENST00000560260 KCTD8Q6ZWB6 473 aa18.34■□□□□ 0.53
SNX1-210ENST00000560260 UTS2BQ765I0 119 aa18.34■□□□□ 0.53
SNX1-210ENST00000560260 CIARTQ8N365 385 aaPredicted RBP18.34■□□□□ 0.53
SNX1-210ENST00000560260 PARP16Q8N5Y8 322 aa18.34■□□□□ 0.53
SNX1-210ENST00000560260 OR5A2Q8NGI9 324 aa18.34■□□□□ 0.53
SNX1-210ENST00000560260 OR13C9Q8NGT0 318 aa18.34■□□□□ 0.53
SNX1-210ENST00000560260 TRMT10AQ8TBZ6 339 aaKnown RBP18.34■□□□□ 0.53
SNX1-210ENST00000560260 UFD1Q92890 307 aa18.34■□□□□ 0.53
SNX1-210ENST00000560260 PIMREGQ9BSJ6 248 aa18.34■□□□□ 0.53
SNX1-210ENST00000560260 ZNF696Q9H7X3 374 aa18.34■□□□□ 0.53
SNX1-210ENST00000560260 C1orf123Q9NWV4 160 aa18.34■□□□□ 0.53
SNX1-210ENST00000560260 IGKV1-27A0A075B6S5 117 aa18.33■□□□□ 0.53
SNX1-210ENST00000560260 OR5B21A6NL26 309 aa18.33■□□□□ 0.53
SNX1-210ENST00000560260 A6NLC8 198 aa18.33■□□□□ 0.53
SNX1-210ENST00000560260 TMEM210A6NLX4 147 aa18.33■□□□□ 0.53
SNX1-210ENST00000560260 TMEM178BH3BS89 294 aa18.33■□□□□ 0.53
SNX1-210ENST00000560260 WNT9BO14905 357 aa18.33■□□□□ 0.53
SNX1-210ENST00000560260 TNFAIP8O95379 198 aa18.33■□□□□ 0.53
SNX1-210ENST00000560260 RPSAP08865 295 aaKnown RBP18.33■□□□□ 0.53
SNX1-210ENST00000560260 OCM2P0CE71 109 aa18.33■□□□□ 0.53
SNX1-210ENST00000560260 NR4A2P43354 598 aa18.33■□□□□ 0.53
SNX1-210ENST00000560260 RPS25P62851 125 aaKnown RBP18.33■□□□□ 0.53
SNX1-210ENST00000560260 GNG3P63215 75 aa18.33■□□□□ 0.53
SNX1-210ENST00000560260 MZT1Q08AG7 82 aa18.33■□□□□ 0.53
SNX1-210ENST00000560260 SSX1Q16384 188 aa18.33■□□□□ 0.53
SNX1-210ENST00000560260 ZNF181Q2M3W8 571 aa18.33■□□□□ 0.53
SNX1-210ENST00000560260 FAM201AQ5SY85 155 aa18.33■□□□□ 0.53
SNX1-210ENST00000560260 AVPI1Q5T686 147 aa18.33■□□□□ 0.53
SNX1-210ENST00000560260 RNF144BQ7Z419 303 aa18.33■□□□□ 0.53
SNX1-210ENST00000560260 ERGIC1Q969X5 290 aa18.33■□□□□ 0.53
SNX1-210ENST00000560260 TMEM106AQ96A25 262 aa18.33■□□□□ 0.53
SNX1-210ENST00000560260 HIST1H2AAQ96QV6 131 aa18.33■□□□□ 0.53
SNX1-210ENST00000560260 OR14A2Q96R54 314 aa18.33■□□□□ 0.53
SNX1-210ENST00000560260 OR51I2Q9H344 312 aa18.33■□□□□ 0.53
SNX1-210ENST00000560260 FN3KRPQ9HA64 309 aa18.33■□□□□ 0.53
SNX1-210ENST00000560260 TAS2R4Q9NYW5 299 aa18.33■□□□□ 0.53
SNX1-210ENST00000560260 CREBBPQ92793 2442 aa18.32■□□□□ 0.52
SNX1-210ENST00000560260 TRBV5-7A0A0A0MS05 114 aa18.32■□□□□ 0.52
SNX1-210ENST00000560260 CLDN25C9JDP6 229 aa18.32■□□□□ 0.52
SNX1-210ENST00000560260 RNF223E7ERA6 249 aa18.32■□□□□ 0.52
SNX1-210ENST00000560260 C3orf80F5H4A9 247 aa18.32■□□□□ 0.52
SNX1-210ENST00000560260 PPIHO43447 177 aaKnown RBP18.32■□□□□ 0.52
SNX1-210ENST00000560260 GATBO75879 557 aaKnown RBP18.32■□□□□ 0.52
SNX1-210ENST00000560260 CPEP16870 476 aa18.32■□□□□ 0.52
SNX1-210ENST00000560260 EGR1P18146 543 aa18.32■□□□□ 0.52
SNX1-210ENST00000560260 ATF1P18846 271 aa18.32■□□□□ 0.52
SNX1-210ENST00000560260 GPR6P46095 362 aaPredicted RBP18.32■□□□□ 0.52
SNX1-210ENST00000560260 TMEM33P57088 247 aa18.32■□□□□ 0.52
SNX1-210ENST00000560260 Q499Y3 187 aa18.32■□□□□ 0.52
SNX1-210ENST00000560260 WDR82Q6UXN9 313 aa18.32■□□□□ 0.52
SNX1-210ENST00000560260 PHC2Q8IXK0 858 aa18.32■□□□□ 0.52
SNX1-210ENST00000560260 TMED9Q9BVK6 235 aa18.32■□□□□ 0.52
SNX1-210ENST00000560260 METTL17Q9H7H0 456 aaPredicted RBP18.32■□□□□ 0.52
SNX1-210ENST00000560260 SF3B6Q9Y3B4 125 aaKnown RBP18.32■□□□□ 0.52
SNX1-210ENST00000560260 WIPI2Q9Y4P8 454 aa18.32■□□□□ 0.52
SNX1-210ENST00000560260 CR1P17927 2039 aa18.32■□□□□ 0.52
SNX1-210ENST00000560260 FLNAP21333 2647 aaKnown RBP18.31■□□□□ 0.52
SNX1-210ENST00000560260 IGHV4-61A0A0C4DH41 118 aa18.31■□□□□ 0.52
SNX1-210ENST00000560260 LRP5LA4QPB2 252 aa18.31■□□□□ 0.52
SNX1-210ENST00000560260 H7C1Q1 480 aa18.31■□□□□ 0.52
SNX1-210ENST00000560260 CDIPTO14735 213 aa18.31■□□□□ 0.52
SNX1-210ENST00000560260 PIN1P1O15428 100 aa18.31■□□□□ 0.52
SNX1-210ENST00000560260 INMTO95050 263 aa18.31■□□□□ 0.52
SNX1-210ENST00000560260 SLC25A16P16260 332 aa18.31■□□□□ 0.52
SNX1-210ENST00000560260 AZGP1P25311 298 aaKnown RBP18.31■□□□□ 0.52
SNX1-210ENST00000560260 GPR50Q13585 617 aa18.31■□□□□ 0.52
SNX1-210ENST00000560260 ARMCX4Q5H9R4 360 aa18.31■□□□□ 0.52
SNX1-210ENST00000560260 ZNF529Q6P280 563 aa18.31■□□□□ 0.52
SNX1-210ENST00000560260 CRIP3Q6Q6R5 217 aa18.31■□□□□ 0.52
SNX1-210ENST00000560260 SCCPDHQ8NBX0 429 aa18.31■□□□□ 0.52
SNX1-210ENST00000560260 OR51A2Q8NGJ7 313 aa18.31■□□□□ 0.52
SNX1-210ENST00000560260 DERL3Q96Q80 235 aa18.31■□□□□ 0.52
SNX1-210ENST00000560260 ZCCHC4Q9H5U6 513 aa18.31■□□□□ 0.52
SNX1-210ENST00000560260 FAM230AA0A1W2PPH8 454 aa18.3■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms