RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 MT-ND4P03905 459 aa10.94□□□□□ -0.66
USP3-213ENST00000559711 TCRBP04435 133 aa10.94□□□□□ -0.66
USP3-213ENST00000559711 CELA3BP08861 270 aa10.94□□□□□ -0.66
USP3-213ENST00000559711 CSF1P09603 554 aa10.94□□□□□ -0.66
USP3-213ENST00000559711 FAM87AP0C7U9 286 aa10.94□□□□□ -0.66
USP3-213ENST00000559711 GIFP27352 417 aa10.94□□□□□ -0.66
USP3-213ENST00000559711 MRPL49Q13405 166 aaKnown RBP10.94□□□□□ -0.66
USP3-213ENST00000559711 TSC22D1Q15714 1073 aa10.94□□□□□ -0.66
USP3-213ENST00000559711 RSBN1Q5VWQ0 802 aaPredicted RBP10.94□□□□□ -0.66
USP3-213ENST00000559711 MOB3CQ70IA8 216 aa10.94□□□□□ -0.66
USP3-213ENST00000559711 MYPOPQ86VE0 399 aaPredicted RBP10.94□□□□□ -0.66
USP3-213ENST00000559711 SFXN3Q9BWM7 321 aa10.94□□□□□ -0.66
USP3-213ENST00000559711 TP63Q9H3D4 680 aaPredicted RBP10.94□□□□□ -0.66
USP3-213ENST00000559711 POFUT1Q9H488 388 aa10.94□□□□□ -0.66
USP3-213ENST00000559711 BANF2Q9H503 90 aa10.94□□□□□ -0.66
USP3-213ENST00000559711 ZNF107Q9UII5 783 aaPredicted RBP10.94□□□□□ -0.66
USP3-213ENST00000559711 NUBP2Q9Y5Y2 271 aa10.94□□□□□ -0.66
USP3-213ENST00000559711 IGF2RP11717 2491 aa10.94□□□□□ -0.66
USP3-213ENST00000559711 ARHGAP21Q5T5U3 1957 aa10.93□□□□□ -0.66
USP3-213ENST00000559711 FAM230AA0A1W2PPH8 454 aa10.93□□□□□ -0.66
USP3-213ENST00000559711 A0A1W2PR80 420 aa10.93□□□□□ -0.66
USP3-213ENST00000559711 TMEM235A6NFC5 223 aa10.93□□□□□ -0.66
USP3-213ENST00000559711 CD300LBA8K4G0 201 aa10.93□□□□□ -0.66
USP3-213ENST00000559711 ZNF850A8MQ14 1090 aa10.93□□□□□ -0.66
USP3-213ENST00000559711 INMT-MINDY4F8WBC2 141 aa10.93□□□□□ -0.66
USP3-213ENST00000559711 HNRNPCP07910 306 aaKnown RBP eCLIP10.93□□□□□ -0.663e-6■■□□□ 11.7
USP3-213ENST00000559711 GLI4P10075 376 aa10.93□□□□□ -0.66
USP3-213ENST00000559711 HOXC12P31275 282 aa10.93□□□□□ -0.66
USP3-213ENST00000559711 IDH3GP51553 393 aaPredicted RBP10.93□□□□□ -0.66
USP3-213ENST00000559711 ATP1B3P54709 279 aa10.93□□□□□ -0.66
USP3-213ENST00000559711 TMEM50BP56557 158 aa10.93□□□□□ -0.66
USP3-213ENST00000559711 ACTBP60709 375 aa10.93□□□□□ -0.66
USP3-213ENST00000559711 ACTG1P63261 375 aa10.93□□□□□ -0.66
USP3-213ENST00000559711 PCGF3Q3KNV8 242 aa10.93□□□□□ -0.66
USP3-213ENST00000559711 TMEM255AQ5JRV8 349 aa10.93□□□□□ -0.66
USP3-213ENST00000559711 PLCXD3Q63HM9 321 aa10.93□□□□□ -0.66
USP3-213ENST00000559711 Q6ZTK2 550 aa10.93□□□□□ -0.66
USP3-213ENST00000559711 RFPL4BQ6ZWI9 263 aa10.93□□□□□ -0.66
USP3-213ENST00000559711 DOLPP1Q86YN1 238 aa10.93□□□□□ -0.66
USP3-213ENST00000559711 FAM169BQ8N8A8 192 aa10.93□□□□□ -0.66
USP3-213ENST00000559711 OR56B1Q8NGI3 324 aa10.93□□□□□ -0.66
USP3-213ENST00000559711 CMBLQ96DG6 245 aa10.93□□□□□ -0.66
USP3-213ENST00000559711 SNRNP40Q96DI7 357 aaKnown RBP10.93□□□□□ -0.66
USP3-213ENST00000559711 RNF170Q96K19 258 aa10.93□□□□□ -0.66
USP3-213ENST00000559711 S100A13Q99584 98 aa10.93□□□□□ -0.66
USP3-213ENST00000559711 NICN1Q9BSH3 213 aa10.93□□□□□ -0.66
USP3-213ENST00000559711 TM2D1Q9BX74 207 aa10.93□□□□□ -0.66
USP3-213ENST00000559711 SELENOIQ9C0D9 397 aa10.93□□□□□ -0.66
USP3-213ENST00000559711 ZMAT3Q9HA38 289 aaKnown RBP10.93□□□□□ -0.66
USP3-213ENST00000559711 EIF3KQ9UBQ5 218 aaKnown RBP10.93□□□□□ -0.66
USP3-213ENST00000559711 ZNF835Q9Y2P0 537 aa10.93□□□□□ -0.66
USP3-213ENST00000559711 ATMQ13315 3056 aa10.93□□□□□ -0.66
USP3-213ENST00000559711 PIEZO2Q9H5I5 2752 aa10.93□□□□□ -0.66
USP3-213ENST00000559711 MAP1BP46821 2468 aaKnown RBP10.92□□□□□ -0.66
USP3-213ENST00000559711 FOXI3A8MTJ6 420 aaPredicted RBP10.92□□□□□ -0.66
USP3-213ENST00000559711 PRRG2O14669 202 aa10.92□□□□□ -0.66
USP3-213ENST00000559711 TMEM225BP0DP42 221 aa10.92□□□□□ -0.66
USP3-213ENST00000559711 MGMTP16455 207 aa10.92□□□□□ -0.66
USP3-213ENST00000559711 HLA-DMAP28067 261 aa10.92□□□□□ -0.66
USP3-213ENST00000559711 CCR6P51684 374 aa10.92□□□□□ -0.66
USP3-213ENST00000559711 RAG2P55895 527 aa10.92□□□□□ -0.66
USP3-213ENST00000559711 CARTPTQ16568 116 aa10.92□□□□□ -0.66
USP3-213ENST00000559711 TATDN3Q17R31 274 aa10.92□□□□□ -0.66
USP3-213ENST00000559711 ZNF474Q6S9Z5 364 aaPredicted RBP10.92□□□□□ -0.66
USP3-213ENST00000559711 FBXW12Q6X9E4 464 aa10.92□□□□□ -0.66
USP3-213ENST00000559711 BTN2A1Q7KYR7 527 aa10.92□□□□□ -0.66
USP3-213ENST00000559711 BHLHA15Q7RTS1 189 aaPredicted RBP10.92□□□□□ -0.66
USP3-213ENST00000559711 FTMTQ8N4E7 242 aa10.92□□□□□ -0.66
USP3-213ENST00000559711 CHST4Q8NCG5 386 aa10.92□□□□□ -0.66
USP3-213ENST00000559711 PXT1Q8NFP0 134 aa10.92□□□□□ -0.66
USP3-213ENST00000559711 STEAP2Q8NFT2 490 aa10.92□□□□□ -0.66
USP3-213ENST00000559711 METTL9Q9H1A3 318 aa10.92□□□□□ -0.66
USP3-213ENST00000559711 CDH20Q9HBT6 801 aa10.92□□□□□ -0.66
USP3-213ENST00000559711 ELF5Q9UKW6 265 aaPredicted RBP10.92□□□□□ -0.66
USP3-213ENST00000559711 DOCK7Q96N67 2140 aa10.92□□□□□ -0.66
USP3-213ENST00000559711 PQLC2LA1A4F0 135 aa10.92□□□□□ -0.66
USP3-213ENST00000559711 OR5H1A6NKK0 313 aa10.92□□□□□ -0.66
USP3-213ENST00000559711 SOCS1O15524 211 aa10.92□□□□□ -0.66
USP3-213ENST00000559711 SMPD2O60906 423 aa10.92□□□□□ -0.66
USP3-213ENST00000559711 ZNF780AO75290 641 aaPredicted RBP10.92□□□□□ -0.66
USP3-213ENST00000559711 IGLV1-44P01699 117 aa10.92□□□□□ -0.66
USP3-213ENST00000559711 GSTP1P09211 210 aaKnown RBP10.92□□□□□ -0.66
USP3-213ENST00000559711 TRAPPC2P0DI81 140 aa10.92□□□□□ -0.66
USP3-213ENST00000559711 TRAPPC2BP0DI82 140 aa10.92□□□□□ -0.66
USP3-213ENST00000559711 HIST1H1DP16402 221 aaKnown RBP10.92□□□□□ -0.66
USP3-213ENST00000559711 GNB3P16520 340 aa10.92□□□□□ -0.66
USP3-213ENST00000559711 PSMB1P20618 241 aaKnown RBP10.92□□□□□ -0.66
USP3-213ENST00000559711 FAUP35544 74 aaKnown RBP10.92□□□□□ -0.66
USP3-213ENST00000559711 PDZK1IP1Q13113 114 aa10.92□□□□□ -0.66
USP3-213ENST00000559711 PRDX4Q13162 271 aa10.92□□□□□ -0.66
USP3-213ENST00000559711 CEACAM21Q3KPI0 293 aa10.92□□□□□ -0.66
USP3-213ENST00000559711 PLAC9Q5JTB6 97 aa10.92□□□□□ -0.66
USP3-213ENST00000559711 GFRALQ6UXV0 394 aa10.92□□□□□ -0.66
USP3-213ENST00000559711 C3P1Q6ZMU1 363 aa10.92□□□□□ -0.66
USP3-213ENST00000559711 ZSCAN4Q8NAM6 433 aaPredicted RBP10.92□□□□□ -0.66
USP3-213ENST00000559711 TMEM229BQ8NBD8 167 aa10.92□□□□□ -0.66
USP3-213ENST00000559711 OR51T1Q8NGJ9 327 aa10.92□□□□□ -0.66
USP3-213ENST00000559711 OR10K1Q8NGX5 313 aa10.92□□□□□ -0.66
USP3-213ENST00000559711 RAB3CQ96E17 227 aa10.92□□□□□ -0.66
USP3-213ENST00000559711 PAPOLGQ9BWT3 736 aaKnown RBP10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms