RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 PUS1Q9Y606 427 aaKnown RBP eCLIP14.44□□□□□ -0.1
CUX1-213ENST00000549414 KIF26BQ2KJY2 2108 aa14.44□□□□□ -0.1
CUX1-213ENST00000549414 PIGBOS1A0A0B4J2F0 54 aa14.44□□□□□ -0.1
CUX1-213ENST00000549414 MPPED1O15442 326 aa14.44□□□□□ -0.1
CUX1-213ENST00000549414 GPR137BO60478 399 aa14.44□□□□□ -0.1
CUX1-213ENST00000549414 CLDN1O95832 211 aa14.44□□□□□ -0.1
CUX1-213ENST00000549414 THBS4P35443 961 aa14.44□□□□□ -0.1
CUX1-213ENST00000549414 KIR3DL2P43630 455 aa14.44□□□□□ -0.1
CUX1-213ENST00000549414 OR6X1Q8NH79 312 aa14.44□□□□□ -0.1
CUX1-213ENST00000549414 PGLYRP3Q96LB9 341 aa14.44□□□□□ -0.1
CUX1-213ENST00000549414 FAM173AQ9BQD7 235 aa14.44□□□□□ -0.1
CUX1-213ENST00000549414 FAAP24Q9BTP7 215 aa14.44□□□□□ -0.1
CUX1-213ENST00000549414 MAGT1Q9H0U3 335 aa14.44□□□□□ -0.1
CUX1-213ENST00000549414 A0A1W2PR77 199 aa14.44□□□□□ -0.1
CUX1-213ENST00000549414 RAB27BO00194 218 aa14.44□□□□□ -0.1
CUX1-213ENST00000549414 TSPAN2O60636 221 aa14.44□□□□□ -0.1
CUX1-213ENST00000549414 ZNF205O95201 554 aa14.44□□□□□ -0.1
CUX1-213ENST00000549414 IL5P05113 134 aa14.44□□□□□ -0.1
CUX1-213ENST00000549414 HIST1H1DP16402 221 aaKnown RBP14.44□□□□□ -0.1
CUX1-213ENST00000549414 OR56B2PQ8NGI1 322 aa14.44□□□□□ -0.1
CUX1-213ENST00000549414 CNTNAP3Q9BZ76 1288 aa14.44□□□□□ -0.1
CUX1-213ENST00000549414 PRR13Q9NZ81 148 aa14.44□□□□□ -0.1
CUX1-213ENST00000549414 IGKV1D-42A0A075B6H8 117 aa14.43□□□□□ -0.1
CUX1-213ENST00000549414 DHRS3O75911 302 aa14.43□□□□□ -0.1
CUX1-213ENST00000549414 OR8G1Q15617 311 aa14.43□□□□□ -0.1
CUX1-213ENST00000549414 ARHGEF39Q8N4T4 335 aa14.43□□□□□ -0.1
CUX1-213ENST00000549414 OR10J5Q8NHC4 309 aa14.43□□□□□ -0.1
CUX1-213ENST00000549414 TP53TG5Q9Y2B4 290 aa14.43□□□□□ -0.1
CUX1-213ENST00000549414 ZNF816-ZNF321PA0A0X1KG74 233 aa14.43□□□□□ -0.1
CUX1-213ENST00000549414 ST8SIA3O43173 380 aa14.43□□□□□ -0.1
CUX1-213ENST00000549414 ZNHIT1O43257 154 aa14.43□□□□□ -0.1
CUX1-213ENST00000549414 OR2F2O95006 317 aa14.43□□□□□ -0.1
CUX1-213ENST00000549414 MRPS34P82930 218 aaKnown RBP14.43□□□□□ -0.1
CUX1-213ENST00000549414 OR2F1Q13607 317 aa14.43□□□□□ -0.1
CUX1-213ENST00000549414 TMEM268Q5VZI3 342 aa14.43□□□□□ -0.1
CUX1-213ENST00000549414 SVBPQ8N300 66 aa14.43□□□□□ -0.1
CUX1-213ENST00000549414 ZNF385AQ96PM9 386 aaKnown RBP14.43□□□□□ -0.1
CUX1-213ENST00000549414 TAF9BQ9HBM6 251 aa14.43□□□□□ -0.1
CUX1-213ENST00000549414 KIR2DS1A0A191URI9 304 aa14.43□□□□□ -0.1
CUX1-213ENST00000549414 SOCS1O15524 211 aa14.43□□□□□ -0.1
CUX1-213ENST00000549414 ADAM11O75078 769 aa14.43□□□□□ -0.1
CUX1-213ENST00000549414 TIAF1O95411 115 aa14.43□□□□□ -0.1
CUX1-213ENST00000549414 SERPINA7P05543 415 aa14.43□□□□□ -0.1
CUX1-213ENST00000549414 KIR2DS4P43632 304 aa14.43□□□□□ -0.1
CUX1-213ENST00000549414 KIR2DS1Q14954 304 aa14.43□□□□□ -0.1
CUX1-213ENST00000549414 CATSPERDQ86XM0 798 aa14.43□□□□□ -0.1
CUX1-213ENST00000549414 WFDC8Q8IUA0 241 aa14.43□□□□□ -0.1
CUX1-213ENST00000549414 ZDHHC23Q8IYP9 409 aa14.43□□□□□ -0.1
CUX1-213ENST00000549414 ZNF808Q8N4W9 903 aaPredicted RBP14.43□□□□□ -0.1
CUX1-213ENST00000549414 SUMF2Q8NBJ7 301 aa14.43□□□□□ -0.1
CUX1-213ENST00000549414 OR2M3Q8NG83 312 aa14.43□□□□□ -0.1
CUX1-213ENST00000549414 OR11H7Q8NGC8 314 aa14.43□□□□□ -0.1
CUX1-213ENST00000549414 CADP27708 2225 aa14.43□□□□□ -0.1
CUX1-213ENST00000549414 LRP3O75074 770 aa14.43□□□□□ -0.1
CUX1-213ENST00000549414 ADRA2AP08913 450 aa14.43□□□□□ -0.1
CUX1-213ENST00000549414 DRAM2Q6UX65 266 aa14.43□□□□□ -0.1
CUX1-213ENST00000549414 GLRA1P23415 457 aa14.42□□□□□ -0.1
CUX1-213ENST00000549414 DMBX1Q8NFW5 382 aa14.42□□□□□ -0.1
CUX1-213ENST00000549414 UQCC2Q9BRT2 126 aa14.42□□□□□ -0.1
CUX1-213ENST00000549414 ZPBPQ9BS86 351 aa14.42□□□□□ -0.1
CUX1-213ENST00000549414 PPP1R3CQ9UQK1 317 aa14.42□□□□□ -0.1
CUX1-213ENST00000549414 PNPP00491 289 aa14.42□□□□□ -0.1
CUX1-213ENST00000549414 NKX2-1P43699 371 aaPredicted RBP14.42□□□□□ -0.1
CUX1-213ENST00000549414 RAB35Q15286 201 aa14.42□□□□□ -0.1
CUX1-213ENST00000549414 CD200R1LQ6Q8B3 271 aa14.42□□□□□ -0.1
CUX1-213ENST00000549414 MARC2Q969Z3 335 aa14.42□□□□□ -0.1
CUX1-213ENST00000549414 ADIPOR1Q96A54 375 aa14.42□□□□□ -0.1
CUX1-213ENST00000549414 ADAT3Q96EY9 351 aaPredicted RBP14.42□□□□□ -0.1
CUX1-213ENST00000549414 PTPRDP23468 1912 aa14.42□□□□□ -0.1
CUX1-213ENST00000549414 FIGNL2A6NMB9 653 aa14.42□□□□□ -0.1
CUX1-213ENST00000549414 PTAFRP25105 342 aa14.42□□□□□ -0.1
CUX1-213ENST00000549414 SRD5A2P31213 254 aa14.42□□□□□ -0.1
CUX1-213ENST00000549414 PEA15Q15121 130 aa14.42□□□□□ -0.1
CUX1-213ENST00000549414 ZNF658BQ4V348 819 aaPredicted RBP14.42□□□□□ -0.1
CUX1-213ENST00000549414 TMEM128Q5BJH2 165 aa14.42□□□□□ -0.1
CUX1-213ENST00000549414 PMS2CLQ68D20 193 aa14.42□□□□□ -0.1
CUX1-213ENST00000549414 FAM219AQ8IW50 185 aa14.42□□□□□ -0.1
CUX1-213ENST00000549414 ABHD3Q8WU67 409 aa14.42□□□□□ -0.1
CUX1-213ENST00000549414 PCDHGA9Q9Y5G4 932 aaKnown RBP14.42□□□□□ -0.1
CUX1-213ENST00000549414 COL4A6Q14031 1691 aa14.42□□□□□ -0.1
CUX1-213ENST00000549414 A0A1W2PQM1 296 aa14.41□□□□□ -0.1
CUX1-213ENST00000549414 TMEM127O75204 238 aa14.41□□□□□ -0.1
CUX1-213ENST00000549414 TBPP20226 339 aa14.41□□□□□ -0.1
CUX1-213ENST00000549414 ZNF610Q8N9Z0 462 aa14.41□□□□□ -0.1
CUX1-213ENST00000549414 ST8SIA2Q92186 375 aa14.41□□□□□ -0.1
CUX1-213ENST00000549414 RTL8AQ9BWD3 113 aa14.41□□□□□ -0.1
CUX1-213ENST00000549414 SLC17A5Q9NRA2 495 aa14.41□□□□□ -0.1
CUX1-213ENST00000549414 A0A0U1RQK1 487 aa14.41□□□□□ -0.1
CUX1-213ENST00000549414 SNAPINO95295 136 aa14.41□□□□□ -0.1
CUX1-213ENST00000549414 ANKRD34CP0C6C1 535 aa14.41□□□□□ -0.1
CUX1-213ENST00000549414 ARR3P36575 388 aa14.41□□□□□ -0.1
CUX1-213ENST00000549414 SSPNQ14714 243 aa14.41□□□□□ -0.1
CUX1-213ENST00000549414 OR2T2Q6IF00 324 aa14.41□□□□□ -0.1
CUX1-213ENST00000549414 CXorf67Q86X51 503 aaPredicted RBP14.41□□□□□ -0.1
CUX1-213ENST00000549414 UNKLQ9H9P5 680 aaKnown RBP14.41□□□□□ -0.1
CUX1-213ENST00000549414 PKDREJQ9NTG1 2253 aa14.41□□□□□ -0.1
CUX1-213ENST00000549414 TRGV5A0A0B4J1U4 118 aa14.41□□□□□ -0.1
CUX1-213ENST00000549414 C1orf196B1AJZ1 125 aa14.41□□□□□ -0.1
CUX1-213ENST00000549414 CATR1Q13166 79 aa14.41□□□□□ -0.1
CUX1-213ENST00000549414 CHAC2Q8WUX2 184 aa14.41□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms