RNA–Protein interactions for RNA: ENST00000536218.5

LIG1-203, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,179 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-203ENST00000536218 TACR3P29371 465 aa12.39□□□□□ -0.43
LIG1-203ENST00000536218 CYCSP99999 105 aaKnown RBP12.39□□□□□ -0.43
LIG1-203ENST00000536218 RAB32Q13637 225 aa12.39□□□□□ -0.43
LIG1-203ENST00000536218 LYSMD4Q5XG99 296 aa12.39□□□□□ -0.43
LIG1-203ENST00000536218 KDM8Q8N371 416 aa12.39□□□□□ -0.43
LIG1-203ENST00000536218 GVQW1Q8N7I0 195 aa12.39□□□□□ -0.43
LIG1-203ENST00000536218 SLC38A9Q8NBW4 561 aa12.39□□□□□ -0.43
LIG1-203ENST00000536218 CLDN23Q96B33 292 aa12.39□□□□□ -0.43
LIG1-203ENST00000536218 ZNF501Q96CX3 271 aaPredicted RBP12.39□□□□□ -0.43
LIG1-203ENST00000536218 SNX22Q96L94 193 aa12.39□□□□□ -0.43
LIG1-203ENST00000536218 ADAD1Q96M93 576 aaKnown RBP12.39□□□□□ -0.43
LIG1-203ENST00000536218 SLC5A7Q9GZV3 580 aa12.39□□□□□ -0.43
LIG1-203ENST00000536218 CBLN4Q9NTU7 201 aa12.39□□□□□ -0.43
LIG1-203ENST00000536218 FRRS1LQ9P0K9 344 aa12.39□□□□□ -0.43
LIG1-203ENST00000536218 A0A1B0GX78 115 aa12.38□□□□□ -0.43
LIG1-203ENST00000536218 H7C1C5 153 aa12.38□□□□□ -0.43
LIG1-203ENST00000536218 WISP1O95388 367 aa12.38□□□□□ -0.43
LIG1-203ENST00000536218 IGKV3-11P04433 115 aa12.38□□□□□ -0.43
LIG1-203ENST00000536218 TRGC1P0CF51 173 aa12.38□□□□□ -0.43
LIG1-203ENST00000536218 HLA-GP17693 338 aa12.38□□□□□ -0.43
LIG1-203ENST00000536218 CCKBRP32239 447 aa12.38□□□□□ -0.43
LIG1-203ENST00000536218 SNCAP37840 140 aa12.38□□□□□ -0.43
LIG1-203ENST00000536218 RPS27P42677 84 aaKnown RBP12.38□□□□□ -0.43
LIG1-203ENST00000536218 CAMLGP49069 296 aa12.38□□□□□ -0.43
LIG1-203ENST00000536218 LCN6P62502 163 aa12.38□□□□□ -0.43
LIG1-203ENST00000536218 PLCXD2Q0VAA5 305 aa12.38□□□□□ -0.43
LIG1-203ENST00000536218 DMRTA1Q5VZB9 504 aa12.38□□□□□ -0.43
LIG1-203ENST00000536218 WBP2NLQ6ICG8 309 aa12.38□□□□□ -0.43
LIG1-203ENST00000536218 DAZLQ92904 295 aaKnown RBP12.38□□□□□ -0.43
LIG1-203ENST00000536218 ADIPOR1Q96A54 375 aa12.38□□□□□ -0.43
LIG1-203ENST00000536218 MUCL1Q96DR8 90 aa12.38□□□□□ -0.43
LIG1-203ENST00000536218 SLC41A2Q96JW4 573 aa12.38□□□□□ -0.43
LIG1-203ENST00000536218 NOL4LQ96MY1 436 aaPredicted RBP12.38□□□□□ -0.43
LIG1-203ENST00000536218 HIST1H2BLQ99880 126 aa12.38□□□□□ -0.43
LIG1-203ENST00000536218 PRRT1Q99946 306 aa12.38□□□□□ -0.43
LIG1-203ENST00000536218 ADAM19Q9H013 955 aa12.38□□□□□ -0.43
LIG1-203ENST00000536218 MYOZ1Q9NP98 299 aaPredicted RBP12.38□□□□□ -0.43
LIG1-203ENST00000536218 COPS7AQ9UBW8 275 aa12.38□□□□□ -0.43
LIG1-203ENST00000536218 KLK13Q9UKR3 277 aa12.38□□□□□ -0.43
LIG1-203ENST00000536218 ELOA3CA0A087WX78 387 aaPredicted RBP12.38□□□□□ -0.43
LIG1-203ENST00000536218 IGKV3D-11A0A0A0MRZ8 115 aa12.38□□□□□ -0.43
LIG1-203ENST00000536218 LOC100289279A0A1B0GTE1 492 aa12.38□□□□□ -0.43
LIG1-203ENST00000536218 C1QL1O75973 258 aa12.38□□□□□ -0.43
LIG1-203ENST00000536218 IFNA6P05013 189 aa12.38□□□□□ -0.43
LIG1-203ENST00000536218 CFIP05156 583 aa12.38□□□□□ -0.43
LIG1-203ENST00000536218 PI3P19957 117 aa12.38□□□□□ -0.43
LIG1-203ENST00000536218 CD81P60033 236 aa12.38□□□□□ -0.43
LIG1-203ENST00000536218 C1QL3Q5VWW1 255 aa12.38□□□□□ -0.43
LIG1-203ENST00000536218 OTPQ5XKR4 325 aa12.38□□□□□ -0.43
LIG1-203ENST00000536218 SUMF2Q8NBJ7 301 aa12.38□□□□□ -0.43
LIG1-203ENST00000536218 KTI12Q96EK9 354 aaPredicted RBP12.38□□□□□ -0.43
LIG1-203ENST00000536218 OR6C1Q96RD1 312 aa12.38□□□□□ -0.43
LIG1-203ENST00000536218 TBL1XR1Q9BZK7 514 aa12.38□□□□□ -0.43
LIG1-203ENST00000536218 SLC35B3Q9H1N7 401 aa12.38□□□□□ -0.43
LIG1-203ENST00000536218 SCAF4O95104 1147 aaKnown RBP12.38□□□□□ -0.43
LIG1-203ENST00000536218 TIAF1O95411 115 aa12.38□□□□□ -0.43
LIG1-203ENST00000536218 HTR2CP28335 458 aa12.38□□□□□ -0.43
LIG1-203ENST00000536218 SLC6A9P48067 706 aa12.38□□□□□ -0.43
LIG1-203ENST00000536218 PRSS54Q6PEW0 395 aa12.38□□□□□ -0.43
LIG1-203ENST00000536218 ZNF679Q8IYX0 411 aa12.38□□□□□ -0.43
LIG1-203ENST00000536218 CHST4Q8NCG5 386 aa12.38□□□□□ -0.43
LIG1-203ENST00000536218 ZNF417Q8TAU3 575 aa12.38□□□□□ -0.43
LIG1-203ENST00000536218 SRA1Q9HD15 236 aaKnown RBP12.38□□□□□ -0.43
LIG1-203ENST00000536218 LAMP5Q9UJQ1 280 aa12.38□□□□□ -0.43
LIG1-203ENST00000536218 WDFY3Q8IZQ1 3526 aa12.38□□□□□ -0.43
LIG1-203ENST00000536218 TRBV6-7A0A0A0MS04 114 aa12.37□□□□□ -0.43
LIG1-203ENST00000536218 DLEU1O43261 78 aa12.37□□□□□ -0.43
LIG1-203ENST00000536218 DUS4LO95620 317 aaKnown RBP12.37□□□□□ -0.43
LIG1-203ENST00000536218 MMP7P09237 267 aaPredicted RBP12.37□□□□□ -0.43
LIG1-203ENST00000536218 CD37P11049 281 aa12.37□□□□□ -0.43
LIG1-203ENST00000536218 CHATP28329 748 aa12.37□□□□□ -0.43
LIG1-203ENST00000536218 DIO1P49895 249 aa12.37□□□□□ -0.43
LIG1-203ENST00000536218 CTXN1P60606 82 aa12.37□□□□□ -0.43
LIG1-203ENST00000536218 ZNF117Q03924 483 aa12.37□□□□□ -0.43
LIG1-203ENST00000536218 LEG1Q6P5S2 330 aa12.37□□□□□ -0.43
LIG1-203ENST00000536218 STT3BQ8TCJ2 826 aa12.37□□□□□ -0.43
LIG1-203ENST00000536218 MARCH1Q8TCQ1 289 aa12.37□□□□□ -0.43
LIG1-203ENST00000536218 SLC2A8Q9NY64 477 aa12.37□□□□□ -0.43
LIG1-203ENST00000536218 ICAM5Q9UMF0 924 aa12.37□□□□□ -0.43
LIG1-203ENST00000536218 STARD10Q9Y365 291 aa12.37□□□□□ -0.43
LIG1-203ENST00000536218 FER1L5A0AVI2 2057 aa12.37□□□□□ -0.43
LIG1-203ENST00000536218 EFSO43281 561 aa12.37□□□□□ -0.43
LIG1-203ENST00000536218 FAM69BQ5VUD6 431 aa12.37□□□□□ -0.43
LIG1-203ENST00000536218 MAFAQ8NHW3 353 aaPredicted RBP12.37□□□□□ -0.43
LIG1-203ENST00000536218 FRZBQ92765 325 aa12.37□□□□□ -0.43
LIG1-203ENST00000536218 CDC6Q99741 560 aa12.37□□□□□ -0.43
LIG1-203ENST00000536218 NMES1Q9C002 83 aa12.37□□□□□ -0.43
LIG1-203ENST00000536218 CHRNA10Q9GZZ6 450 aa12.37□□□□□ -0.43
LIG1-203ENST00000536218 C19orf12Q9NSK7 152 aa12.37□□□□□ -0.43
LIG1-203ENST00000536218 PCNX3Q9H6A9 2034 aa12.37□□□□□ -0.43
LIG1-203ENST00000536218 FRG2CA6NGY1 282 aa12.36□□□□□ -0.43
LIG1-203ENST00000536218 ZNF724A8MTY0 619 aa12.36□□□□□ -0.43
LIG1-203ENST00000536218 C9J4A7 227 aa12.36□□□□□ -0.43
LIG1-203ENST00000536218 C11orf98E9PRG8 122 aa12.36□□□□□ -0.43
LIG1-203ENST00000536218 M0R143 59 aa12.36□□□□□ -0.43
LIG1-203ENST00000536218 GEMIN2O14893 280 aaKnown RBP12.36□□□□□ -0.43
LIG1-203ENST00000536218 CSTBP04080 98 aaKnown RBP12.36□□□□□ -0.43
LIG1-203ENST00000536218 GZMBP10144 247 aa12.36□□□□□ -0.43
LIG1-203ENST00000536218 MDKP21741 143 aaPredicted RBP12.36□□□□□ -0.43
LIG1-203ENST00000536218 CX3CR1P49238 355 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms