RNA–Protein interactions for RNA: ENST00000508685.1

SH3RF1-203, Transcript of SH3 domain containing ring finger 1, humanhuman

TSL 1 (best)

Gene SH3RF1, Length 2,020 nt, Biotype processed transcript, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1-203ENST00000508685 PLEKHN1Q494U1 663 aaPredicted RBP9.68□□□□□ -0.86
SH3RF1-203ENST00000508685 DCAF10Q5QP82 559 aa9.68□□□□□ -0.86
SH3RF1-203ENST00000508685 CFAP77Q6ZQR2 320 aa9.68□□□□□ -0.86
SH3RF1-203ENST00000508685 NAA40Q86UY6 237 aa9.68□□□□□ -0.86
SH3RF1-203ENST00000508685 CLRN3Q8NCR9 226 aa9.68□□□□□ -0.86
SH3RF1-203ENST00000508685 OR14L1PQ8NHC6 308 aa9.68□□□□□ -0.86
SH3RF1-203ENST00000508685 LRRC46Q96FV0 321 aa9.68□□□□□ -0.86
SH3RF1-203ENST00000508685 SEC22AQ96IW7 307 aa9.68□□□□□ -0.86
SH3RF1-203ENST00000508685 PIGQQ9BRB3 760 aa9.68□□□□□ -0.86
SH3RF1-203ENST00000508685 URM1Q9BTM9 101 aaKnown RBP9.68□□□□□ -0.86
SH3RF1-203ENST00000508685 SELENOIQ9C0D9 397 aa9.68□□□□□ -0.86
SH3RF1-203ENST00000508685 SEC61A2Q9H9S3 476 aa9.68□□□□□ -0.86
SH3RF1-203ENST00000508685 CHMP1AQ9HD42 196 aaPredicted RBP9.68□□□□□ -0.86
SH3RF1-203ENST00000508685 RAB18Q9NP72 206 aa9.68□□□□□ -0.86
SH3RF1-203ENST00000508685 PCDHB16Q9NRJ7 776 aa9.68□□□□□ -0.86
SH3RF1-203ENST00000508685 LRFN1Q9P244 771 aa9.68□□□□□ -0.86
SH3RF1-203ENST00000508685 DCHS1Q96JQ0 3298 aa9.68□□□□□ -0.86
SH3RF1-203ENST00000508685 A0A0J9YW62 118 aa9.68□□□□□ -0.86
SH3RF1-203ENST00000508685 SPAARA0A1B0GVQ0 90 aa9.68□□□□□ -0.86
SH3RF1-203ENST00000508685 WIPF3A6NGB9 483 aa9.68□□□□□ -0.86
SH3RF1-203ENST00000508685 FAM25EA8MYX2 175 aa9.68□□□□□ -0.86
SH3RF1-203ENST00000508685 ATP6V1G2-DDX39BF2Z307 99 aa9.68□□□□□ -0.86
SH3RF1-203ENST00000508685 VAMP1P23763 118 aa9.68□□□□□ -0.86
SH3RF1-203ENST00000508685 ITGA3P26006 1051 aa9.68□□□□□ -0.86
SH3RF1-203ENST00000508685 RFC3P40938 356 aa9.68□□□□□ -0.86
SH3RF1-203ENST00000508685 CLDN17P56750 224 aa9.68□□□□□ -0.86
SH3RF1-203ENST00000508685 RAC1P63000 192 aa9.68□□□□□ -0.86
SH3RF1-203ENST00000508685 ZNF239Q16600 458 aaKnown RBP9.68□□□□□ -0.86
SH3RF1-203ENST00000508685 RTL6Q6ICC9 239 aa9.68□□□□□ -0.86
SH3RF1-203ENST00000508685 IL22RA1Q8N6P7 574 aa9.68□□□□□ -0.86
SH3RF1-203ENST00000508685 SLC30A7Q8NEW0 376 aa9.68□□□□□ -0.86
SH3RF1-203ENST00000508685 OR56B1Q8NGI3 324 aa9.68□□□□□ -0.86
SH3RF1-203ENST00000508685 OR6X1Q8NH79 312 aa9.68□□□□□ -0.86
SH3RF1-203ENST00000508685 RNF141Q8WVD5 230 aa9.68□□□□□ -0.86
SH3RF1-203ENST00000508685 ADAT3Q96EY9 351 aaPredicted RBP9.68□□□□□ -0.86
SH3RF1-203ENST00000508685 PIK3IP1Q96FE7 263 aa9.68□□□□□ -0.86
SH3RF1-203ENST00000508685 ZNF385AQ96PM9 386 aaKnown RBP9.68□□□□□ -0.86
SH3RF1-203ENST00000508685 SIGLEC12Q96PQ1 595 aa9.68□□□□□ -0.86
SH3RF1-203ENST00000508685 OCSTAMPQ9BR26 566 aa9.68□□□□□ -0.86
SH3RF1-203ENST00000508685 ZNF416Q9BWM5 594 aa9.68□□□□□ -0.86
SH3RF1-203ENST00000508685 HES7Q9BYE0 225 aa9.68□□□□□ -0.86
SH3RF1-203ENST00000508685 SRXN1Q9BYN0 137 aa9.68□□□□□ -0.86
SH3RF1-203ENST00000508685 NKX6-2Q9C056 277 aaPredicted RBP9.68□□□□□ -0.86
SH3RF1-203ENST00000508685 MYEF2Q9P2K5 600 aaKnown RBP9.68□□□□□ -0.86
SH3RF1-203ENST00000508685 MED13Q9UHV7 2174 aa9.67□□□□□ -0.86
SH3RF1-203ENST00000508685 C5orf51A6NDU8 294 aa9.67□□□□□ -0.86
SH3RF1-203ENST00000508685 DNASE2O00115 360 aaPredicted RBP9.67□□□□□ -0.86
SH3RF1-203ENST00000508685 TRAPPC6AO75865 159 aa9.67□□□□□ -0.86
SH3RF1-203ENST00000508685 NEURL1O76050 574 aa9.67□□□□□ -0.86
SH3RF1-203ENST00000508685 QDPRP09417 244 aa9.67□□□□□ -0.86
SH3RF1-203ENST00000508685 PET100P0DJ07 73 aa9.67□□□□□ -0.86
SH3RF1-203ENST00000508685 SRD5A2P31213 254 aa9.67□□□□□ -0.86
SH3RF1-203ENST00000508685 DEFA5Q01523 94 aa9.67□□□□□ -0.86
SH3RF1-203ENST00000508685 TGIF1Q15583 401 aa9.67□□□□□ -0.86
SH3RF1-203ENST00000508685 KCNMB1Q16558 191 aa9.67□□□□□ -0.86
SH3RF1-203ENST00000508685 HIST3H3Q16695 136 aa9.67□□□□□ -0.86
SH3RF1-203ENST00000508685 LRRC37A5PQ49AS3 106 aa9.67□□□□□ -0.86
SH3RF1-203ENST00000508685 WIPI1Q5MNZ9 446 aaPredicted RBP9.67□□□□□ -0.86
SH3RF1-203ENST00000508685 ATP1A1-AS1Q5TC04 95 aa9.67□□□□□ -0.86
SH3RF1-203ENST00000508685 C17orf107Q6ZR85 190 aa9.67□□□□□ -0.86
SH3RF1-203ENST00000508685 ZNF101Q8IZC7 436 aa9.67□□□□□ -0.86
SH3RF1-203ENST00000508685 SVBPQ8N300 66 aa9.67□□□□□ -0.86
SH3RF1-203ENST00000508685 CCDC54Q8NEL0 328 aa9.67□□□□□ -0.86
SH3RF1-203ENST00000508685 BPIFCQ8NFQ6 507 aa9.67□□□□□ -0.86
SH3RF1-203ENST00000508685 OR5AP2Q8NGF4 316 aa9.67□□□□□ -0.86
SH3RF1-203ENST00000508685 OR10S1Q8NGN2 331 aa9.67□□□□□ -0.86
SH3RF1-203ENST00000508685 MRGPRFQ96AM1 343 aa9.67□□□□□ -0.86
SH3RF1-203ENST00000508685 RAB3CQ96E17 227 aa9.67□□□□□ -0.86
SH3RF1-203ENST00000508685 WDR13Q9H1Z4 485 aa9.67□□□□□ -0.86
SH3RF1-203ENST00000508685 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP9.67□□□□□ -0.86
SH3RF1-203ENST00000508685 TMEM100Q9NV29 134 aa9.67□□□□□ -0.86
SH3RF1-203ENST00000508685 GPR132Q9UNW8 380 aa9.67□□□□□ -0.86
SH3RF1-203ENST00000508685 MRPS28Q9Y2Q9 187 aaKnown RBP9.67□□□□□ -0.86
SH3RF1-203ENST00000508685 KCNK7Q9Y2U2 307 aa9.67□□□□□ -0.86
SH3RF1-203ENST00000508685 LHFPL6Q9Y693 200 aa9.67□□□□□ -0.86
SH3RF1-203ENST00000508685 LOC102725191A0A1B0GVB3 256 aa9.66□□□□□ -0.86
SH3RF1-203ENST00000508685 ZNF726A6NNF4 738 aa9.66□□□□□ -0.86
SH3RF1-203ENST00000508685 LMX1BO60663 402 aa9.66□□□□□ -0.86
SH3RF1-203ENST00000508685 ATG12O94817 140 aa9.66□□□□□ -0.86
SH3RF1-203ENST00000508685 SFT2D2O95562 160 aa9.66□□□□□ -0.86
SH3RF1-203ENST00000508685 FTH1P19P0C7X4 201 aa9.66□□□□□ -0.86
SH3RF1-203ENST00000508685 LYL1P12980 280 aa9.66□□□□□ -0.86
SH3RF1-203ENST00000508685 HIST1H1DP16402 221 aaKnown RBP9.66□□□□□ -0.86
SH3RF1-203ENST00000508685 GNB3P16520 340 aa9.66□□□□□ -0.86
SH3RF1-203ENST00000508685 AKR1C4P17516 323 aa9.66□□□□□ -0.86
SH3RF1-203ENST00000508685 CCL1P22362 96 aa9.66□□□□□ -0.86
SH3RF1-203ENST00000508685 GDF1P27539 372 aa9.66□□□□□ -0.86
SH3RF1-203ENST00000508685 ECI1P42126 302 aa9.66□□□□□ -0.86
SH3RF1-203ENST00000508685 FLI1Q01543 452 aaPredicted RBP9.66□□□□□ -0.86
SH3RF1-203ENST00000508685 FOXO1Q12778 655 aa9.66□□□□□ -0.86
SH3RF1-203ENST00000508685 PPA1Q15181 289 aa9.66□□□□□ -0.86
SH3RF1-203ENST00000508685 SURF2Q15527 256 aaPredicted RBP9.66□□□□□ -0.86
SH3RF1-203ENST00000508685 PABPC1L2AQ5JQF8 200 aa9.66□□□□□ -0.86
SH3RF1-203ENST00000508685 PDSS1Q5T2R2 415 aa9.66□□□□□ -0.86
SH3RF1-203ENST00000508685 ELP2Q6IA86 826 aa9.66□□□□□ -0.86
SH3RF1-203ENST00000508685 EIF5AL1Q6IS14 154 aaKnown RBP9.66□□□□□ -0.86
SH3RF1-203ENST00000508685 LINC00696Q6ZRV3 163 aa9.66□□□□□ -0.86
SH3RF1-203ENST00000508685 KCTD9Q7L273 389 aa9.66□□□□□ -0.86
SH3RF1-203ENST00000508685 DOK3Q7L591 496 aa9.66□□□□□ -0.86
SH3RF1-203ENST00000508685 GGNQ86UU5 652 aa9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms