RNA–Protein interactions for RNA: ENST00000490193.5

USP39-216, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 1,028 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-216ENST00000490193 ENTPD1P49961 510 aa6.61□□□□□ -1.35
USP39-216ENST00000490193 SMIM11AP58511 58 aa6.61□□□□□ -1.35
USP39-216ENST00000490193 EGFEM1PQ0D2K5 195 aa6.61□□□□□ -1.35
USP39-216ENST00000490193 CNN3Q15417 329 aaKnown RBP6.61□□□□□ -1.35
USP39-216ENST00000490193 TAF13Q15543 124 aa6.61□□□□□ -1.35
USP39-216ENST00000490193 TIGD6Q17RP2 521 aa6.61□□□□□ -1.35
USP39-216ENST00000490193 CCBE1Q6UXH8 406 aaPredicted RBP6.61□□□□□ -1.35
USP39-216ENST00000490193 MKXQ8IYA7 352 aa6.61□□□□□ -1.35
USP39-216ENST00000490193 C11orf42Q8N5U0 333 aa6.61□□□□□ -1.35
USP39-216ENST00000490193 PROKR2Q8NFJ6 384 aa6.61□□□□□ -1.35
USP39-216ENST00000490193 OR52H1Q8NGJ2 320 aa6.61□□□□□ -1.35
USP39-216ENST00000490193 ZNRF4Q8WWF5 429 aa6.61□□□□□ -1.35
USP39-216ENST00000490193 OR5P3Q8WZ94 311 aa6.61□□□□□ -1.35
USP39-216ENST00000490193 RPL3LQ92901 407 aaKnown RBP6.61□□□□□ -1.35
USP39-216ENST00000490193 SDSLQ96GA7 329 aa6.61□□□□□ -1.35
USP39-216ENST00000490193 RCC1LQ96I51 464 aaKnown RBP6.61□□□□□ -1.35
USP39-216ENST00000490193 NKX3-1Q99801 234 aaPredicted RBP6.61□□□□□ -1.35
USP39-216ENST00000490193 B9D2Q9BPU9 175 aa6.61□□□□□ -1.35
USP39-216ENST00000490193 PAPOLGQ9BWT3 736 aaKnown RBP6.61□□□□□ -1.35
USP39-216ENST00000490193 PRSS22Q9GZN4 317 aa6.61□□□□□ -1.35
USP39-216ENST00000490193 NSRP1Q9H0G5 558 aaKnown RBP6.61□□□□□ -1.35
USP39-216ENST00000490193 RGCCQ9H4X1 137 aa6.61□□□□□ -1.35
USP39-216ENST00000490193 NLKQ9UBE8 527 aa6.61□□□□□ -1.35
USP39-216ENST00000490193 PITPNC1Q9UKF7 332 aa6.61□□□□□ -1.35
USP39-216ENST00000490193 RHBDD3Q9Y3P4 386 aa6.61□□□□□ -1.35
USP39-216ENST00000490193 DSCAML1Q8TD84 2053 aa6.61□□□□□ -1.35
USP39-216ENST00000490193 RYR2Q92736 4967 aa6.6□□□□□ -1.35
USP39-216ENST00000490193 A0A1W2PPH5 198 aa6.6□□□□□ -1.35
USP39-216ENST00000490193 WI2-2373I1.2A0A1W2PRP0 233 aa6.6□□□□□ -1.35
USP39-216ENST00000490193 DHRS12A0PJE2 317 aa6.6□□□□□ -1.35
USP39-216ENST00000490193 NDUFAB1O14561 156 aa6.6□□□□□ -1.35
USP39-216ENST00000490193 TBX1O43435 398 aa6.6□□□□□ -1.35
USP39-216ENST00000490193 AKR7A2O43488 359 aa6.6□□□□□ -1.35
USP39-216ENST00000490193 DIRAS1O95057 198 aa6.6□□□□□ -1.35
USP39-216ENST00000490193 GADD45GO95257 159 aa6.6□□□□□ -1.35
USP39-216ENST00000490193 CST4P01036 141 aa6.6□□□□□ -1.35
USP39-216ENST00000490193 ALDOBP05062 364 aa6.6□□□□□ -1.35
USP39-216ENST00000490193 ANXA2P07355 339 aaKnown RBP6.6□□□□□ -1.35
USP39-216ENST00000490193 SPARCP09486 303 aa6.6□□□□□ -1.35
USP39-216ENST00000490193 PSG2P11465 335 aa6.6□□□□□ -1.35
USP39-216ENST00000490193 POU1F1P28069 291 aa6.6□□□□□ -1.35
USP39-216ENST00000490193 FMO3P31513 532 aa6.6□□□□□ -1.35
USP39-216ENST00000490193 CX3CR1P49238 355 aa6.6□□□□□ -1.35
USP39-216ENST00000490193 DYNLT3P51808 116 aa6.6□□□□□ -1.35
USP39-216ENST00000490193 SLC25A1P53007 311 aa6.6□□□□□ -1.35
USP39-216ENST00000490193 SLC35A2P78381 396 aa6.6□□□□□ -1.35
USP39-216ENST00000490193 TSPAN31Q12999 210 aa6.6□□□□□ -1.35
USP39-216ENST00000490193 PRDX4Q13162 271 aa6.6□□□□□ -1.35
USP39-216ENST00000490193 KRT72Q14CN4 511 aa6.6□□□□□ -1.35
USP39-216ENST00000490193 SLC35F1Q5T1Q4 408 aa6.6□□□□□ -1.35
USP39-216ENST00000490193 RPL13AP3Q6NVV1 102 aa6.6□□□□□ -1.35
USP39-216ENST00000490193 KRT74Q7RTS7 529 aa6.6□□□□□ -1.35
USP39-216ENST00000490193 CPLX4Q7Z7G2 160 aa6.6□□□□□ -1.35
USP39-216ENST00000490193 ZNRF1Q8ND25 227 aa6.6□□□□□ -1.35
USP39-216ENST00000490193 OR52J3Q8NH60 311 aa6.6□□□□□ -1.35
USP39-216ENST00000490193 RPS4Y2Q8TD47 263 aa6.6□□□□□ -1.35
USP39-216ENST00000490193 RNF133Q8WVZ7 376 aa6.6□□□□□ -1.35
USP39-216ENST00000490193 HPSE2Q8WWQ2 592 aa6.6□□□□□ -1.35
USP39-216ENST00000490193 FAM162AQ96A26 154 aa6.6□□□□□ -1.35
USP39-216ENST00000490193 FOXRED1Q96CU9 486 aaPredicted RBP6.6□□□□□ -1.35
USP39-216ENST00000490193 HOPXQ9BPY8 73 aaPredicted RBP6.6□□□□□ -1.35
USP39-216ENST00000490193 NMNAT2Q9BZQ4 307 aa6.6□□□□□ -1.35
USP39-216ENST00000490193 FGF23Q9GZV9 251 aaPredicted RBP6.6□□□□□ -1.35
USP39-216ENST00000490193 ELL3Q9HB65 397 aaPredicted RBP6.6□□□□□ -1.35
USP39-216ENST00000490193 TPSG1Q9NRR2 321 aa6.6□□□□□ -1.35
USP39-216ENST00000490193 C19orf12Q9NSK7 152 aa6.6□□□□□ -1.35
USP39-216ENST00000490193 CENPMQ9NSP4 180 aa6.6□□□□□ -1.35
USP39-216ENST00000490193 DCAF13Q9NV06 445 aaKnown RBP6.6□□□□□ -1.35
USP39-216ENST00000490193 ZNF319Q9P2F9 582 aa6.6□□□□□ -1.35
USP39-216ENST00000490193 SAMD4AQ9UPU9 718 aaKnown RBP6.6□□□□□ -1.35
USP39-216ENST00000490193 TBL2Q9Y4P3 447 aaKnown RBP6.6□□□□□ -1.35
USP39-216ENST00000490193 N6AMT1Q9Y5N5 214 aa6.6□□□□□ -1.35
USP39-216ENST00000490193 hCG_1809904A0A1W2PP81 198 aa6.59□□□□□ -1.35
USP39-216ENST00000490193 A0A1W2PPE2 198 aa6.59□□□□□ -1.35
USP39-216ENST00000490193 A0A1W2PR64 198 aa6.59□□□□□ -1.35
USP39-216ENST00000490193 A0A1W2PRV1 198 aa6.59□□□□□ -1.35
USP39-216ENST00000490193 ODF3BA8MYP8 253 aa6.59□□□□□ -1.35
USP39-216ENST00000490193 HMGB1P1B2RPK0 211 aaPredicted RBP6.59□□□□□ -1.35
USP39-216ENST00000490193 ZNF593O00488 134 aaPredicted RBP6.59□□□□□ -1.35
USP39-216ENST00000490193 SEMG1P04279 462 aa6.59□□□□□ -1.35
USP39-216ENST00000490193 NCK1P16333 377 aa6.59□□□□□ -1.35
USP39-216ENST00000490193 GLRA1P23415 457 aa6.59□□□□□ -1.35
USP39-216ENST00000490193 ACKR3P25106 362 aa6.59□□□□□ -1.35
USP39-216ENST00000490193 HSD11B1P28845 292 aa6.59□□□□□ -1.35
USP39-216ENST00000490193 MSX2P35548 267 aaPredicted RBP6.59□□□□□ -1.35
USP39-216ENST00000490193 IFNGR2P38484 337 aa6.59□□□□□ -1.35
USP39-216ENST00000490193 BLVRAP53004 296 aa6.59□□□□□ -1.35
USP39-216ENST00000490193 LGALS4P56470 323 aa6.59□□□□□ -1.35
USP39-216ENST00000490193 ZNF121P58317 390 aaPredicted RBP6.59□□□□□ -1.35
USP39-216ENST00000490193 KRTAP10-11P60412 298 aa6.59□□□□□ -1.35
USP39-216ENST00000490193 ERVFRD-1P60508 538 aa6.59□□□□□ -1.35
USP39-216ENST00000490193 GMFBP60983 142 aa6.59□□□□□ -1.35
USP39-216ENST00000490193 COL10A1Q03692 680 aa6.59□□□□□ -1.35
USP39-216ENST00000490193 CD69Q07108 199 aa6.59□□□□□ -1.35
USP39-216ENST00000490193 DCTN2Q13561 401 aaKnown RBP6.59□□□□□ -1.35
USP39-216ENST00000490193 HACD2Q6Y1H2 254 aa6.59□□□□□ -1.35
USP39-216ENST00000490193 LHFPL4Q7Z7J7 247 aa6.59□□□□□ -1.35
USP39-216ENST00000490193 CALHM1Q8IU99 346 aa6.59□□□□□ -1.35
USP39-216ENST00000490193 FAM185AQ8N0U4 392 aa6.59□□□□□ -1.35
USP39-216ENST00000490193 DYNAPQ8N1N2 210 aa6.59□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms