RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 ZIC3O60481 467 aa15.73■□□□□ 0.11
VIM-206ENST00000487938 CTRB1P17538 263 aa15.73■□□□□ 0.11
VIM-206ENST00000487938 THBS4P35443 961 aa15.73■□□□□ 0.11
VIM-206ENST00000487938 FAM189A2Q15884 450 aa15.73■□□□□ 0.11
VIM-206ENST00000487938 NKAPLQ5M9Q1 402 aa15.73■□□□□ 0.11
VIM-206ENST00000487938 CTRB2Q6GPI1 263 aa15.73■□□□□ 0.11
VIM-206ENST00000487938 OR51F2Q8NH61 342 aa15.73■□□□□ 0.11
VIM-206ENST00000487938 SCGB3A2Q96PL1 93 aa15.73■□□□□ 0.11
VIM-206ENST00000487938 PIGQQ9BRB3 760 aa15.73■□□□□ 0.11
VIM-206ENST00000487938 PROK2Q9HC23 129 aa15.73■□□□□ 0.11
VIM-206ENST00000487938 PLEK2Q9NYT0 353 aa15.73■□□□□ 0.11
VIM-206ENST00000487938 SIT1Q9Y3P8 196 aa15.73■□□□□ 0.11
VIM-206ENST00000487938 IGHV1-45A0A0A0MS14 117 aa15.72■□□□□ 0.11
VIM-206ENST00000487938 FGF16O43320 207 aa15.72■□□□□ 0.11
VIM-206ENST00000487938 DHHO43323 396 aa15.72■□□□□ 0.11
VIM-206ENST00000487938 UMODP07911 640 aa15.72■□□□□ 0.11
VIM-206ENST00000487938 FKBP2P26885 142 aaKnown RBP15.72■□□□□ 0.11
VIM-206ENST00000487938 SRSF3P84103 164 aaKnown RBP15.72■□□□□ 0.11
VIM-206ENST00000487938 RAB32Q13637 225 aa15.72■□□□□ 0.11
VIM-206ENST00000487938 SNAI3Q3KNW1 292 aa15.72■□□□□ 0.11
VIM-206ENST00000487938 CHRFAM7AQ494W8 412 aa15.72■□□□□ 0.11
VIM-206ENST00000487938 FAM122CQ6P4D5 195 aa15.72■□□□□ 0.11
VIM-206ENST00000487938 Q7L0L9 218 aa15.72■□□□□ 0.11
VIM-206ENST00000487938 FOXRED2Q8IWF2 684 aa15.72■□□□□ 0.11
VIM-206ENST00000487938 CCDC36Q8IYA8 594 aa15.72■□□□□ 0.11
VIM-206ENST00000487938 STOML3Q8TAV4 291 aa15.72■□□□□ 0.11
VIM-206ENST00000487938 MR1Q95460 341 aa15.72■□□□□ 0.11
VIM-206ENST00000487938 HDHD3Q9BSH5 251 aaPredicted RBP15.72■□□□□ 0.11
VIM-206ENST00000487938 NKX6-2Q9C056 277 aaPredicted RBP15.72■□□□□ 0.11
VIM-206ENST00000487938 ACKR4Q9NPB9 350 aa15.72■□□□□ 0.11
VIM-206ENST00000487938 OR2S2Q9NQN1 319 aa15.72■□□□□ 0.11
VIM-206ENST00000487938 TRIOBPQ9H2D6 2365 aa15.72■□□□□ 0.11
VIM-206ENST00000487938 A0A0U1RQV5 110 aa15.71■□□□□ 0.11
VIM-206ENST00000487938 M0R135 149 aa15.71■□□□□ 0.11
VIM-206ENST00000487938 TNFSF11O14788 317 aa15.71■□□□□ 0.11
VIM-206ENST00000487938 TAS2R46P59540 309 aa15.71■□□□□ 0.11
VIM-206ENST00000487938 C10orf128Q5T292 105 aa15.71■□□□□ 0.11
VIM-206ENST00000487938 OR9K2Q8NGE7 335 aa15.71■□□□□ 0.11
VIM-206ENST00000487938 FBXO17Q96EF6 278 aa15.71■□□□□ 0.11
VIM-206ENST00000487938 ZNF799Q96GE5 643 aa15.71■□□□□ 0.11
VIM-206ENST00000487938 GPR173Q9NS66 373 aa15.71■□□□□ 0.11
VIM-206ENST00000487938 DKKL1Q9UK85 242 aa15.71■□□□□ 0.11
VIM-206ENST00000487938 MCTS1Q9ULC4 181 aaKnown RBP15.71■□□□□ 0.11
VIM-206ENST00000487938 LIFP15018 202 aa15.71■□□□□ 0.11
VIM-206ENST00000487938 RPS2P15880 293 aaKnown RBP15.71■□□□□ 0.11
VIM-206ENST00000487938 ZNF585AQ6P3V2 769 aa15.71■□□□□ 0.11
VIM-206ENST00000487938 PRSS54Q6PEW0 395 aa15.71■□□□□ 0.11
VIM-206ENST00000487938 OPN5Q6U736 354 aa15.71■□□□□ 0.11
VIM-206ENST00000487938 TMEM123Q8N131 208 aa15.71■□□□□ 0.11
VIM-206ENST00000487938 SLC30A7Q8NEW0 376 aa15.71■□□□□ 0.11
VIM-206ENST00000487938 OR2AE1Q8NHA4 323 aa15.71■□□□□ 0.11
VIM-206ENST00000487938 IFI44Q8TCB0 444 aa15.71■□□□□ 0.11
VIM-206ENST00000487938 HAS2Q92819 552 aa15.71■□□□□ 0.11
VIM-206ENST00000487938 CHST5Q9GZS9 411 aa15.71■□□□□ 0.11
VIM-206ENST00000487938 SLC39A1Q9NY26 324 aa15.71■□□□□ 0.11
VIM-206ENST00000487938 GHRLQ9UBU3 117 aa15.71■□□□□ 0.11
VIM-206ENST00000487938 A0A087WZY1 265 aa15.7■□□□□ 0.1
VIM-206ENST00000487938 A0A0J9YW62 118 aa15.7■□□□□ 0.1
VIM-206ENST00000487938 ACTL6AO96019 429 aa15.7■□□□□ 0.1
VIM-206ENST00000487938 SFTPBP07988 381 aa15.7■□□□□ 0.1
VIM-206ENST00000487938 ALDH3B1P43353 468 aa15.7■□□□□ 0.1
VIM-206ENST00000487938 S100A10P60903 97 aa15.7■□□□□ 0.1
VIM-206ENST00000487938 CHAF1BQ13112 559 aa15.7■□□□□ 0.1
VIM-206ENST00000487938 ZIC4Q8N9L1 334 aa15.7■□□□□ 0.1
VIM-206ENST00000487938 SGK3Q96BR1 496 aa15.7■□□□□ 0.1
VIM-206ENST00000487938 C2orf50Q96LR7 162 aa15.7■□□□□ 0.1
VIM-206ENST00000487938 IMMP1LQ96LU5 166 aa15.7■□□□□ 0.1
VIM-206ENST00000487938 NECAB3Q96P71 396 aaPredicted RBP15.7■□□□□ 0.1
VIM-206ENST00000487938 ANGPTL4Q9BY76 406 aa15.7■□□□□ 0.1
VIM-206ENST00000487938 ULBP2Q9BZM5 246 aa15.7■□□□□ 0.1
VIM-206ENST00000487938 PLEKHJ1Q9NW61 149 aa15.7■□□□□ 0.1
VIM-206ENST00000487938 LOC102723996A0A087X1L8 192 aa15.7■□□□□ 0.1
VIM-206ENST00000487938 TMEM218A2RU14 115 aa15.7■□□□□ 0.1
VIM-206ENST00000487938 RAB19A4D1S5 217 aa15.7■□□□□ 0.1
VIM-206ENST00000487938 GPR31O00270 319 aa15.7■□□□□ 0.1
VIM-206ENST00000487938 ABCD4O14678 606 aa15.7■□□□□ 0.1
VIM-206ENST00000487938 TSPAN9O75954 239 aa15.7■□□□□ 0.1
VIM-206ENST00000487938 CD79AP11912 226 aa15.7■□□□□ 0.1
VIM-206ENST00000487938 FGF5P12034 268 aa15.7■□□□□ 0.1
VIM-206ENST00000487938 COX6A1P12074 109 aa15.7■□□□□ 0.1
VIM-206ENST00000487938 NR2C1P13056 603 aa15.7■□□□□ 0.1
VIM-206ENST00000487938 CCL4P13236 92 aa15.7■□□□□ 0.1
VIM-206ENST00000487938 DSCR4P56555 118 aaPredicted RBP15.7■□□□□ 0.1
VIM-206ENST00000487938 PLEKHN1Q494U1 663 aaPredicted RBP15.7■□□□□ 0.1
VIM-206ENST00000487938 PP6455Q8WZ26 134 aa15.7■□□□□ 0.1
VIM-206ENST00000487938 NAA11Q9BSU3 229 aaPredicted RBP15.7■□□□□ 0.1
VIM-206ENST00000487938 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP15.7■□□□□ 0.1
VIM-206ENST00000487938 DHRS7CA6NNS2 312 aa15.69■□□□□ 0.1
VIM-206ENST00000487938 ANGPTL7O43827 346 aa15.69■□□□□ 0.1
VIM-206ENST00000487938 EIF1BO60739 113 aaKnown RBP15.69■□□□□ 0.1
VIM-206ENST00000487938 ATG12O94817 140 aa15.69■□□□□ 0.1
VIM-206ENST00000487938 SERPINA5P05154 406 aa15.69■□□□□ 0.1
VIM-206ENST00000487938 TMEM225BP0DP42 221 aa15.69■□□□□ 0.1
VIM-206ENST00000487938 HIST1H3AP68431 136 aa15.69■□□□□ 0.1
VIM-206ENST00000487938 HIST2H3PS2Q5TEC6 136 aa15.69■□□□□ 0.1
VIM-206ENST00000487938 ZNF468Q5VIY5 522 aaPredicted RBP15.69■□□□□ 0.1
VIM-206ENST00000487938 UQCC3Q6UW78 93 aa15.69■□□□□ 0.1
VIM-206ENST00000487938 HIST2H3AQ71DI3 136 aa15.69■□□□□ 0.1
VIM-206ENST00000487938 TMEM156Q8N614 296 aa15.69■□□□□ 0.1
VIM-206ENST00000487938 RNF141Q8WVD5 230 aa15.69■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms