RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 MSMBP08118 114 aa6.79□□□□□ -1.32
USP40-216ENST00000485943 HCKP08631 526 aa6.79□□□□□ -1.32
USP40-216ENST00000485943 FAHP16930 419 aa6.79□□□□□ -1.32
USP40-216ENST00000485943 SRD5A1P18405 259 aa6.79□□□□□ -1.32
USP40-216ENST00000485943 GLRA1P23415 457 aa6.79□□□□□ -1.32
USP40-216ENST00000485943 EEF1B2P24534 225 aaKnown RBP6.79□□□□□ -1.32
USP40-216ENST00000485943 DCKP27707 260 aa6.79□□□□□ -1.32
USP40-216ENST00000485943 PSMB10P40306 273 aa6.79□□□□□ -1.32
USP40-216ENST00000485943 CD200P41217 278 aa6.79□□□□□ -1.32
USP40-216ENST00000485943 CSNK2BP67870 215 aa6.79□□□□□ -1.32
USP40-216ENST00000485943 LCN2P80188 198 aa6.79□□□□□ -1.32
USP40-216ENST00000485943 GALEQ14376 348 aa6.79□□□□□ -1.32
USP40-216ENST00000485943 KRTAP27-1Q3LI81 207 aa6.79□□□□□ -1.32
USP40-216ENST00000485943 CLVS2Q5SYC1 327 aa6.79□□□□□ -1.32
USP40-216ENST00000485943 C6orf52Q5T4I8 152 aa6.79□□□□□ -1.32
USP40-216ENST00000485943 ZNF691Q5VV52 312 aa6.79□□□□□ -1.32
USP40-216ENST00000485943 SFRP4Q6FHJ7 346 aaPredicted RBP6.79□□□□□ -1.32
USP40-216ENST00000485943 Q6ZR03 302 aa6.79□□□□□ -1.32
USP40-216ENST00000485943 SLC36A1Q7Z2H8 476 aa6.79□□□□□ -1.32
USP40-216ENST00000485943 ZNF573Q86YE8 665 aa6.79□□□□□ -1.32
USP40-216ENST00000485943 BPIFB6Q8NFQ5 453 aa6.79□□□□□ -1.32
USP40-216ENST00000485943 OR5AK2Q8NH90 309 aa6.79□□□□□ -1.32
USP40-216ENST00000485943 CNIH3Q8TBE1 160 aa6.79□□□□□ -1.32
USP40-216ENST00000485943 TRMT10AQ8TBZ6 339 aaKnown RBP6.79□□□□□ -1.32
USP40-216ENST00000485943 LRRC29Q8WV35 223 aa6.79□□□□□ -1.32
USP40-216ENST00000485943 MYDGFQ969H8 173 aa6.79□□□□□ -1.32
USP40-216ENST00000485943 UBE2FQ969M7 185 aa6.79□□□□□ -1.32
USP40-216ENST00000485943 SPSB4Q96A44 273 aa6.79□□□□□ -1.32
USP40-216ENST00000485943 BORCS8Q96FH0 119 aa6.79□□□□□ -1.32
USP40-216ENST00000485943 TMEM80Q96HE8 168 aa6.79□□□□□ -1.32
USP40-216ENST00000485943 Q96M66 194 aa6.79□□□□□ -1.32
USP40-216ENST00000485943 GPER1Q99527 375 aa6.79□□□□□ -1.32
USP40-216ENST00000485943 S100A13Q99584 98 aa6.79□□□□□ -1.32
USP40-216ENST00000485943 CCDC90BQ9GZT6 254 aa6.79□□□□□ -1.32
USP40-216ENST00000485943 GCM1Q9NP62 436 aa6.79□□□□□ -1.32
USP40-216ENST00000485943 ACOXLQ9NUZ1 547 aa6.79□□□□□ -1.32
USP40-216ENST00000485943 FAM206AQ9NX38 181 aa6.79□□□□□ -1.32
USP40-216ENST00000485943 CKLFQ9UBR5 152 aa6.79□□□□□ -1.32
USP40-216ENST00000485943 CLN8Q9UBY8 286 aa6.79□□□□□ -1.32
USP40-216ENST00000485943 GLS2Q9UI32 602 aa6.79□□□□□ -1.32
USP40-216ENST00000485943 MRM2Q9UI43 246 aaKnown RBP6.79□□□□□ -1.32
USP40-216ENST00000485943 HHLA2Q9UM44 414 aa6.79□□□□□ -1.32
USP40-216ENST00000485943 DHDHQ9UQ10 334 aa6.79□□□□□ -1.32
USP40-216ENST00000485943 ERGIC3Q9Y282 383 aa6.79□□□□□ -1.32
USP40-216ENST00000485943 RHBDD3Q9Y3P4 386 aa6.79□□□□□ -1.32
USP40-216ENST00000485943 CACNG2Q9Y698 323 aa6.79□□□□□ -1.32
USP40-216ENST00000485943 HSPE1-MOB4S4R3N1 261 aa6.79□□□□□ -1.32
USP40-216ENST00000485943 CR1P17927 2039 aa6.79□□□□□ -1.32
USP40-216ENST00000485943 TANC2Q9HCD6 1990 aa6.78□□□□□ -1.32
USP40-216ENST00000485943 TRAV20A0A0B4J274 112 aa6.78□□□□□ -1.32
USP40-216ENST00000485943 TRBV2A0A0J9YWF9 115 aa6.78□□□□□ -1.32
USP40-216ENST00000485943 LOC107986453A0A1B0GWG9 222 aa6.78□□□□□ -1.32
USP40-216ENST00000485943 VWC2LB2RUY7 222 aa6.78□□□□□ -1.32
USP40-216ENST00000485943 ZNF732B4DXR9 585 aa6.78□□□□□ -1.32
USP40-216ENST00000485943 MLNRO43193 412 aa6.78□□□□□ -1.32
USP40-216ENST00000485943 ADAM20O43506 726 aa6.78□□□□□ -1.32
USP40-216ENST00000485943 NDUFA2O43678 99 aa6.78□□□□□ -1.32
USP40-216ENST00000485943 CLIC3O95833 236 aa6.78□□□□□ -1.32
USP40-216ENST00000485943 IGHV4-31P0DP07 118 aa6.78□□□□□ -1.32
USP40-216ENST00000485943 PSKH1P11801 424 aa6.78□□□□□ -1.32
USP40-216ENST00000485943 GABRA2P47869 451 aa6.78□□□□□ -1.32
USP40-216ENST00000485943 PPP3R1P63098 170 aa6.78□□□□□ -1.32
USP40-216ENST00000485943 MFGE8Q08431 387 aaPredicted RBP6.78□□□□□ -1.32
USP40-216ENST00000485943 ALKBH1Q13686 389 aaKnown RBP6.78□□□□□ -1.32
USP40-216ENST00000485943 RSPO1Q2MKA7 263 aaPredicted RBP6.78□□□□□ -1.32
USP40-216ENST00000485943 CEACAM21Q3KPI0 293 aa6.78□□□□□ -1.32
USP40-216ENST00000485943 TMEM155Q4W5P6 130 aa6.78□□□□□ -1.32
USP40-216ENST00000485943 ARMCX4Q5H9R4 360 aa6.78□□□□□ -1.32
USP40-216ENST00000485943 SLC25A30Q5SVS4 291 aa6.78□□□□□ -1.32
USP40-216ENST00000485943 OGFRL1Q5TC84 451 aaPredicted RBP6.78□□□□□ -1.32
USP40-216ENST00000485943 AHSA2Q719I0 299 aa6.78□□□□□ -1.32
USP40-216ENST00000485943 ELMOD2Q8IZ81 293 aa6.78□□□□□ -1.32
USP40-216ENST00000485943 OR1M1Q8NGA1 313 aa6.78□□□□□ -1.32
USP40-216ENST00000485943 RHOXF1Q8NHV9 184 aa6.78□□□□□ -1.32
USP40-216ENST00000485943 NPRL2Q8WTW4 380 aa6.78□□□□□ -1.32
USP40-216ENST00000485943 TMEM186Q96B77 213 aa6.78□□□□□ -1.32
USP40-216ENST00000485943 TMIGD2Q96BF3 282 aa6.78□□□□□ -1.32
USP40-216ENST00000485943 MSI2Q96DH6 328 aaKnown RBP6.78□□□□□ -1.32
USP40-216ENST00000485943 LGALS12Q96DT0 336 aa6.78□□□□□ -1.32
USP40-216ENST00000485943 NEIL1Q96FI4 390 aaPredicted RBP6.78□□□□□ -1.32
USP40-216ENST00000485943 RCC1LQ96I51 464 aaKnown RBP6.78□□□□□ -1.32
USP40-216ENST00000485943 SSBP3Q9BWW4 388 aaPredicted RBP6.78□□□□□ -1.32
USP40-216ENST00000485943 ELL3Q9HB65 397 aaPredicted RBP6.78□□□□□ -1.32
USP40-216ENST00000485943 GPR173Q9NS66 373 aa6.78□□□□□ -1.32
USP40-216ENST00000485943 HIF1ANQ9NWT6 349 aa6.78□□□□□ -1.32
USP40-216ENST00000485943 AASSQ9UDR5 926 aa6.78□□□□□ -1.32
USP40-216ENST00000485943 SLC22A13Q9Y226 551 aa6.78□□□□□ -1.32
USP40-216ENST00000485943 LRCH1Q9Y2L9 728 aa6.78□□□□□ -1.32
USP40-216ENST00000485943 TPRKBQ9Y3C4 175 aa6.78□□□□□ -1.32
USP40-216ENST00000485943 MAP1AP78559 2803 aaPredicted RBP6.78□□□□□ -1.32
USP40-216ENST00000485943 HIVEP2P31629 2446 aa6.78□□□□□ -1.32
USP40-216ENST00000485943 DOCK11Q5JSL3 2073 aa6.77□□□□□ -1.33
USP40-216ENST00000485943 FLNAP21333 2647 aaKnown RBP6.77□□□□□ -1.33
USP40-216ENST00000485943 ABCA1O95477 2261 aa6.77□□□□□ -1.33
USP40-216ENST00000485943 ANKRD61A6NGH8 418 aa6.77□□□□□ -1.33
USP40-216ENST00000485943 OOEPA6NGQ2 149 aa6.77□□□□□ -1.33
USP40-216ENST00000485943 A6NIN4 97 aa6.77□□□□□ -1.33
USP40-216ENST00000485943 TMEM212A6NML5 194 aa6.77□□□□□ -1.33
USP40-216ENST00000485943 PTGES3LE9PB15 166 aa6.77□□□□□ -1.33
USP40-216ENST00000485943 DLGAP1O14490 977 aa6.77□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms