RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 PADI1Q9ULC6 663 aa11.68□□□□□ -0.54
CCDC3-202ENST00000378839 GSTP1P09211 210 aaKnown RBP11.68□□□□□ -0.54
CCDC3-202ENST00000378839 B4GALT1P15291 398 aa11.68□□□□□ -0.54
CCDC3-202ENST00000378839 MGMTP16455 207 aa11.68□□□□□ -0.54
CCDC3-202ENST00000378839 HLA-GP17693 338 aa11.68□□□□□ -0.54
CCDC3-202ENST00000378839 VAMP1P23763 118 aa11.68□□□□□ -0.54
CCDC3-202ENST00000378839 SRD5A2P31213 254 aa11.68□□□□□ -0.54
CCDC3-202ENST00000378839 ATXN7L3Q14CW9 347 aaPredicted RBP11.68□□□□□ -0.54
CCDC3-202ENST00000378839 ACER2Q5QJU3 275 aa11.68□□□□□ -0.54
CCDC3-202ENST00000378839 AADACL3Q5VUY0 350 aa11.68□□□□□ -0.54
CCDC3-202ENST00000378839 SPINK14Q6IE38 97 aa11.68□□□□□ -0.54
CCDC3-202ENST00000378839 JMJD6Q6NYC1 403 aaPredicted RBP11.68□□□□□ -0.54
CCDC3-202ENST00000378839 KCTD9Q7L273 389 aa11.68□□□□□ -0.54
CCDC3-202ENST00000378839 STPG2Q8N412 459 aa11.68□□□□□ -0.54
CCDC3-202ENST00000378839 OR13G1Q8NGZ3 307 aa11.68□□□□□ -0.54
CCDC3-202ENST00000378839 RTBDNQ9BSG5 229 aaPredicted RBP11.68□□□□□ -0.54
CCDC3-202ENST00000378839 HDHD3Q9BSH5 251 aaPredicted RBP11.68□□□□□ -0.54
CCDC3-202ENST00000378839 ST6GALNAC5Q9BVH7 336 aa11.68□□□□□ -0.54
CCDC3-202ENST00000378839 SPRY4Q9C004 299 aa11.68□□□□□ -0.54
CCDC3-202ENST00000378839 CHST5Q9GZS9 411 aa11.68□□□□□ -0.54
CCDC3-202ENST00000378839 OR10A2Q9H208 303 aa11.68□□□□□ -0.54
CCDC3-202ENST00000378839 GPR173Q9NS66 373 aa11.68□□□□□ -0.54
CCDC3-202ENST00000378839 TNFSF18Q9UNG2 199 aa11.68□□□□□ -0.54
CCDC3-202ENST00000378839 DOCK10Q96BY6 2186 aa11.68□□□□□ -0.54
CCDC3-202ENST00000378839 hCG_1807616A0A1W2PRN6 198 aa11.67□□□□□ -0.54
CCDC3-202ENST00000378839 TOR1AO14656 332 aa11.67□□□□□ -0.54
CCDC3-202ENST00000378839 RFC3P40938 356 aa11.67□□□□□ -0.54
CCDC3-202ENST00000378839 CARD18P57730 90 aa11.67□□□□□ -0.54
CCDC3-202ENST00000378839 SUPT4H1P63272 117 aaKnown RBP11.67□□□□□ -0.54
CCDC3-202ENST00000378839 MRPS34P82930 218 aaKnown RBP11.67□□□□□ -0.54
CCDC3-202ENST00000378839 DEFA5Q01523 94 aa11.67□□□□□ -0.54
CCDC3-202ENST00000378839 FOXO1Q12778 655 aa11.67□□□□□ -0.54
CCDC3-202ENST00000378839 IGSF11Q5DX21 431 aa11.67□□□□□ -0.54
CCDC3-202ENST00000378839 DCAF12Q5T6F0 453 aa11.67□□□□□ -0.54
CCDC3-202ENST00000378839 FRYQ5TBA9 3013 aa11.67□□□□□ -0.54
CCDC3-202ENST00000378839 C11orf87Q6NUJ2 197 aa11.67□□□□□ -0.54
CCDC3-202ENST00000378839 DBX2Q6ZNG2 339 aa11.67□□□□□ -0.54
CCDC3-202ENST00000378839 ZFHX4Q86UP3 3567 aa11.67□□□□□ -0.54
CCDC3-202ENST00000378839 OR1S1Q8NH92 325 aa11.67□□□□□ -0.54
CCDC3-202ENST00000378839 AKR7LQ8NHP1 331 aa11.67□□□□□ -0.54
CCDC3-202ENST00000378839 SCARB1Q8WTV0 552 aa11.67□□□□□ -0.54
CCDC3-202ENST00000378839 SDHAF2Q9NX18 166 aa11.67□□□□□ -0.54
CCDC3-202ENST00000378839 FOXJ2Q9P0K8 574 aa11.67□□□□□ -0.54
CCDC3-202ENST00000378839 LOC400499M0QZD8 3231 aa11.67□□□□□ -0.54
CCDC3-202ENST00000378839 THBS4P35443 961 aa11.67□□□□□ -0.54
CCDC3-202ENST00000378839 ALDH3B1P43353 468 aa11.67□□□□□ -0.54
CCDC3-202ENST00000378839 FAM74A1Q5RGS3 127 aa11.67□□□□□ -0.54
CCDC3-202ENST00000378839 OR10D3Q8NH80 312 aa11.67□□□□□ -0.54
CCDC3-202ENST00000378839 TERB2Q8NHR7 220 aa11.67□□□□□ -0.54
CCDC3-202ENST00000378839 RHBDD1Q8TEB9 315 aa11.67□□□□□ -0.54
CCDC3-202ENST00000378839 ABHD3Q8WU67 409 aa11.67□□□□□ -0.54
CCDC3-202ENST00000378839 SGCZQ96LD1 299 aa11.67□□□□□ -0.54
CCDC3-202ENST00000378839 ZNF75AQ96N20 296 aa11.67□□□□□ -0.54
CCDC3-202ENST00000378839 PECRQ9BY49 303 aa11.67□□□□□ -0.54
CCDC3-202ENST00000378839 MCTS1Q9ULC4 181 aaKnown RBP11.67□□□□□ -0.54
CCDC3-202ENST00000378839 GPR132Q9UNW8 380 aa11.67□□□□□ -0.54
CCDC3-202ENST00000378839 FAM25EA8MYX2 175 aa11.67□□□□□ -0.54
CCDC3-202ENST00000378839 C9orf172C9J069 976 aa11.67□□□□□ -0.54
CCDC3-202ENST00000378839 P04436 131 aa11.67□□□□□ -0.54
CCDC3-202ENST00000378839 NUP62P37198 522 aaPredicted RBP11.67□□□□□ -0.54
CCDC3-202ENST00000378839 SLC16A14Q7RTX9 510 aa11.67□□□□□ -0.54
CCDC3-202ENST00000378839 C6orf201Q7Z4U5 140 aa11.67□□□□□ -0.54
CCDC3-202ENST00000378839 HES7Q9BYE0 225 aa11.67□□□□□ -0.54
CCDC3-202ENST00000378839 P4HTMQ9NXG6 502 aa11.67□□□□□ -0.54
CCDC3-202ENST00000378839 ANGPTL7O43827 346 aa11.66□□□□□ -0.54
CCDC3-202ENST00000378839 TRAPPC6AO75865 159 aa11.66□□□□□ -0.54
CCDC3-202ENST00000378839 SCGNO76038 276 aa11.66□□□□□ -0.54
CCDC3-202ENST00000378839 CELA3AP09093 270 aa11.66□□□□□ -0.54
CCDC3-202ENST00000378839 BLVRBP30043 206 aaPredicted RBP11.66□□□□□ -0.54
CCDC3-202ENST00000378839 GUCA1AP43080 201 aaPredicted RBP11.66□□□□□ -0.54
CCDC3-202ENST00000378839 VAX1Q5SQQ9 334 aa11.66□□□□□ -0.54
CCDC3-202ENST00000378839 ATRAIDQ6UW56 229 aa11.66□□□□□ -0.54
CCDC3-202ENST00000378839 C6orf15Q6UXA7 325 aaPredicted RBP11.66□□□□□ -0.54
CCDC3-202ENST00000378839 OR56B1Q8NGI3 324 aa11.66□□□□□ -0.54
CCDC3-202ENST00000378839 HAS2Q92819 552 aa11.66□□□□□ -0.54
CCDC3-202ENST00000378839 ARRDC1-AS1Q9H2J1 176 aa11.66□□□□□ -0.54
CCDC3-202ENST00000378839 TMEM38BQ9NVV0 291 aa11.66□□□□□ -0.54
CCDC3-202ENST00000378839 EEF1E1-BLOC1S5C9J1V9 151 aa11.66□□□□□ -0.54
CCDC3-202ENST00000378839 IFNA6P05013 189 aa11.66□□□□□ -0.54
CCDC3-202ENST00000378839 GP1BAP07359 652 aa11.66□□□□□ -0.54
CCDC3-202ENST00000378839 HOXD4P09016 255 aaPredicted RBP11.66□□□□□ -0.54
CCDC3-202ENST00000378839 ZNF32P17041 273 aa11.66□□□□□ -0.54
CCDC3-202ENST00000378839 GMFBP60983 142 aa11.66□□□□□ -0.54
CCDC3-202ENST00000378839 KRTAP27-1Q3LI81 207 aa11.66□□□□□ -0.54
CCDC3-202ENST00000378839 LHFPL1Q86WI0 220 aa11.66□□□□□ -0.54
CCDC3-202ENST00000378839 OR5M9Q8NGP3 310 aa11.66□□□□□ -0.54
CCDC3-202ENST00000378839 LHFPL5Q8TAF8 219 aa11.66□□□□□ -0.54
CCDC3-202ENST00000378839 PDCD10Q9BUL8 212 aa11.66□□□□□ -0.54
CCDC3-202ENST00000378839 SF3B5Q9BWJ5 86 aaKnown RBP11.66□□□□□ -0.54
CCDC3-202ENST00000378839 TUBAL3A6NHL2 446 aa11.65□□□□□ -0.54
CCDC3-202ENST00000378839 SGCEO43556 437 aa11.65□□□□□ -0.54
CCDC3-202ENST00000378839 SPRY1O43609 319 aaPredicted RBP11.65□□□□□ -0.54
CCDC3-202ENST00000378839 HTR3BO95264 441 aa11.65□□□□□ -0.54
CCDC3-202ENST00000378839 DUS4LO95620 317 aaKnown RBP11.65□□□□□ -0.54
CCDC3-202ENST00000378839 IGHV3-9P01782 118 aa11.65□□□□□ -0.54
CCDC3-202ENST00000378839 SLC25A4P12235 298 aa11.65□□□□□ -0.54
CCDC3-202ENST00000378839 C4BPBP20851 252 aa11.65□□□□□ -0.54
CCDC3-202ENST00000378839 GFRA1P56159 465 aa11.65□□□□□ -0.54
CCDC3-202ENST00000378839 PSG4Q00888 419 aa11.65□□□□□ -0.54
CCDC3-202ENST00000378839 ABLIM2Q6H8Q1 611 aa11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 86.1 ms