RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 PLEK2Q9NYT0 353 aa10.67□□□□□ -0.7
CLIP3-201ENST00000360535 ADAMTS9Q9P2N4 1935 aa10.67□□□□□ -0.7
CLIP3-201ENST00000360535 IGLV3-19P01714 112 aa10.67□□□□□ -0.7
CLIP3-201ENST00000360535 ITGA3P26006 1051 aa10.67□□□□□ -0.7
CLIP3-201ENST00000360535 PJVKQ0ZLH3 352 aa10.67□□□□□ -0.7
CLIP3-201ENST00000360535 UBE2V2Q15819 145 aa10.67□□□□□ -0.7
CLIP3-201ENST00000360535 SWI5Q1ZZU3 235 aa10.67□□□□□ -0.7
CLIP3-201ENST00000360535 PHLDA2Q53GA4 152 aa10.67□□□□□ -0.7
CLIP3-201ENST00000360535 AADACL3Q5VUY0 350 aa10.67□□□□□ -0.7
CLIP3-201ENST00000360535 UQCC3Q6UW78 93 aa10.67□□□□□ -0.7
CLIP3-201ENST00000360535 RAB11FIP2Q7L804 512 aa10.67□□□□□ -0.7
CLIP3-201ENST00000360535 ARRDC1Q8N5I2 433 aa10.67□□□□□ -0.7
CLIP3-201ENST00000360535 PLPP5Q8NEB5 264 aa10.67□□□□□ -0.7
CLIP3-201ENST00000360535 SLC30A7Q8NEW0 376 aa10.67□□□□□ -0.7
CLIP3-201ENST00000360535 REEP6Q96HR9 211 aa10.67□□□□□ -0.7
CLIP3-201ENST00000360535 C2orf50Q96LR7 162 aa10.67□□□□□ -0.7
CLIP3-201ENST00000360535 NECAB3Q96P71 396 aaPredicted RBP10.67□□□□□ -0.7
CLIP3-201ENST00000360535 UCN2Q96RP3 112 aa10.67□□□□□ -0.7
CLIP3-201ENST00000360535 FAAP24Q9BTP7 215 aa10.67□□□□□ -0.7
CLIP3-201ENST00000360535 FANCFQ9NPI8 374 aa10.67□□□□□ -0.7
CLIP3-201ENST00000360535 LPAR3Q9UBY5 353 aa10.67□□□□□ -0.7
CLIP3-201ENST00000360535 B3GALT1Q9Y5Z6 326 aa10.67□□□□□ -0.7
CLIP3-201ENST00000360535 ARPC4-TTLL3A0A0A6YYG9 625 aa10.66□□□□□ -0.7
CLIP3-201ENST00000360535 ZNF98A6NK75 572 aa10.66□□□□□ -0.7
CLIP3-201ENST00000360535 ZNF850A8MQ14 1090 aa10.66□□□□□ -0.7
CLIP3-201ENST00000360535 SCGNO76038 276 aa10.66□□□□□ -0.7
CLIP3-201ENST00000360535 SNAPINO95295 136 aa10.66□□□□□ -0.7
CLIP3-201ENST00000360535 SFTA3P0C7M3 94 aa10.66□□□□□ -0.7
CLIP3-201ENST00000360535 DAOP14920 347 aa10.66□□□□□ -0.7
CLIP3-201ENST00000360535 HFEQ30201 348 aa10.66□□□□□ -0.7
CLIP3-201ENST00000360535 RAET1LQ5VY80 246 aa10.66□□□□□ -0.7
CLIP3-201ENST00000360535 SEMA6DQ8NFY4 1073 aa10.66□□□□□ -0.7
CLIP3-201ENST00000360535 OR5T2Q8NGG2 359 aa10.66□□□□□ -0.7
CLIP3-201ENST00000360535 RXFP4Q8TDU9 374 aa10.66□□□□□ -0.7
CLIP3-201ENST00000360535 SLC39A7Q92504 469 aa10.66□□□□□ -0.7
CLIP3-201ENST00000360535 SLC26A1Q9H2B4 701 aa10.66□□□□□ -0.7
CLIP3-201ENST00000360535 NXT1Q9UKK6 140 aaKnown RBP10.66□□□□□ -0.7
CLIP3-201ENST00000360535 WIF1Q9Y5W5 379 aa10.66□□□□□ -0.7
CLIP3-201ENST00000360535 AHCTF1Q8WYP5 2266 aa10.66□□□□□ -0.7
CLIP3-201ENST00000360535 DHRS7CA6NNS2 312 aa10.66□□□□□ -0.7
CLIP3-201ENST00000360535 K7EPK0 472 aa10.66□□□□□ -0.7
CLIP3-201ENST00000360535 MFNGO00587 321 aa10.66□□□□□ -0.7
CLIP3-201ENST00000360535 FGF16O43320 207 aa10.66□□□□□ -0.7
CLIP3-201ENST00000360535 NME2P1O60361 137 aa10.66□□□□□ -0.7
CLIP3-201ENST00000360535 FAM157CP0CG43 387 aa10.66□□□□□ -0.7
CLIP3-201ENST00000360535 CD37P11049 281 aa10.66□□□□□ -0.7
CLIP3-201ENST00000360535 GLB1P16278 677 aa10.66□□□□□ -0.7
CLIP3-201ENST00000360535 FPR2P25090 351 aa10.66□□□□□ -0.7
CLIP3-201ENST00000360535 PTGER4P35408 488 aa10.66□□□□□ -0.7
CLIP3-201ENST00000360535 GPR85P60893 370 aa10.66□□□□□ -0.7
CLIP3-201ENST00000360535 Q6ZRG5 221 aa10.66□□□□□ -0.7
CLIP3-201ENST00000360535 DOK3Q7L591 496 aa10.66□□□□□ -0.7
CLIP3-201ENST00000360535 SULF2Q8IWU5 870 aa10.66□□□□□ -0.7
CLIP3-201ENST00000360535 FAM71E2Q8N5Q1 922 aa10.66□□□□□ -0.7
CLIP3-201ENST00000360535 ZNF385AQ96PM9 386 aaKnown RBP10.66□□□□□ -0.7
CLIP3-201ENST00000360535 SULT4A1Q9BR01 284 aa10.66□□□□□ -0.7
CLIP3-201ENST00000360535 PECRQ9BY49 303 aa10.66□□□□□ -0.7
CLIP3-201ENST00000360535 RAB18Q9NP72 206 aa10.66□□□□□ -0.7
CLIP3-201ENST00000360535 MMP26Q9NRE1 261 aa10.66□□□□□ -0.7
CLIP3-201ENST00000360535 MYOTQ9UBF9 498 aa10.66□□□□□ -0.7
CLIP3-201ENST00000360535 NDRG3Q9UGV2 375 aa10.66□□□□□ -0.7
CLIP3-201ENST00000360535 MCTS1Q9ULC4 181 aaKnown RBP10.66□□□□□ -0.7
CLIP3-201ENST00000360535 ZNF407Q9C0G0 2248 aa10.66□□□□□ -0.7
CLIP3-201ENST00000360535 RNASEK-C17orf49H0YIS7 233 aa10.66□□□□□ -0.7
CLIP3-201ENST00000360535 CSTBP04080 98 aaKnown RBP10.66□□□□□ -0.7
CLIP3-201ENST00000360535 FCGR2CP31995 323 aa10.66□□□□□ -0.7
CLIP3-201ENST00000360535 CBX5P45973 191 aa10.66□□□□□ -0.7
CLIP3-201ENST00000360535 MST1LQ2TV78 715 aa10.66□□□□□ -0.7
CLIP3-201ENST00000360535 PHYHD1Q5SRE7 291 aa10.66□□□□□ -0.7
CLIP3-201ENST00000360535 OGFOD3Q6PK18 319 aa10.66□□□□□ -0.7
CLIP3-201ENST00000360535 C17orf82Q86X59 251 aaPredicted RBP10.66□□□□□ -0.7
CLIP3-201ENST00000360535 SECTM1Q8WVN6 248 aa10.66□□□□□ -0.7
CLIP3-201ENST00000360535 MRPL24Q96A35 216 aaKnown RBP10.66□□□□□ -0.7
CLIP3-201ENST00000360535 ZNF837Q96EG3 531 aaPredicted RBP10.66□□□□□ -0.7
CLIP3-201ENST00000360535 LYZL4Q96KX0 146 aa10.66□□□□□ -0.7
CLIP3-201ENST00000360535 RPS10P5Q9NQ39 176 aa10.66□□□□□ -0.7
CLIP3-201ENST00000360535 CACNA1EQ15878 2313 aa10.65□□□□□ -0.7
CLIP3-201ENST00000360535 C9JQL5 133 aa10.65□□□□□ -0.7
CLIP3-201ENST00000360535 F8VVB4 439 aa10.65□□□□□ -0.7
CLIP3-201ENST00000360535 F8VWA3 439 aa10.65□□□□□ -0.7
CLIP3-201ENST00000360535 SNRNP70P08621 437 aaKnown RBP10.65□□□□□ -0.7
CLIP3-201ENST00000360535 CD79AP11912 226 aa10.65□□□□□ -0.7
CLIP3-201ENST00000360535 TBPP20226 339 aa10.65□□□□□ -0.7
CLIP3-201ENST00000360535 RPL12P30050 165 aaKnown RBP10.65□□□□□ -0.7
CLIP3-201ENST00000360535 CSNK1A1P48729 337 aa10.65□□□□□ -0.7
CLIP3-201ENST00000360535 RAB13P51153 203 aa10.65□□□□□ -0.7
CLIP3-201ENST00000360535 CTAG1AP78358 180 aa10.65□□□□□ -0.7
CLIP3-201ENST00000360535 SMCO1Q147U7 214 aa10.65□□□□□ -0.7
CLIP3-201ENST00000360535 NFAM1Q8NET5 270 aaPredicted RBP10.65□□□□□ -0.7
CLIP3-201ENST00000360535 FNDC9Q8TBE3 224 aa10.65□□□□□ -0.7
CLIP3-201ENST00000360535 MRGPRX4Q96LA9 322 aa10.65□□□□□ -0.7
CLIP3-201ENST00000360535 SCGB3A2Q96PL1 93 aa10.65□□□□□ -0.7
CLIP3-201ENST00000360535 NRIP2Q9BQI9 281 aa10.65□□□□□ -0.7
CLIP3-201ENST00000360535 DIDO1Q9BTC0 2240 aaKnown RBP10.65□□□□□ -0.7
CLIP3-201ENST00000360535 COL4A2P08572 1712 aa10.65□□□□□ -0.7
CLIP3-201ENST00000360535 CCDC163A0A0D9SF12 145 aa10.65□□□□□ -0.7
CLIP3-201ENST00000360535 LINC01387J3KSC0 135 aa10.65□□□□□ -0.7
CLIP3-201ENST00000360535 TLX3O43711 291 aaPredicted RBP10.65□□□□□ -0.7
CLIP3-201ENST00000360535 C1QL1O75973 258 aa10.65□□□□□ -0.7
CLIP3-201ENST00000360535 ZFAND5O76080 213 aa10.65□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms