RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 TNFRSF1AP19438 455 aa18.77■□□□□ 0.6
SDC3-202ENST00000339394 CRYBB2P43320 205 aa18.77■□□□□ 0.6
SDC3-202ENST00000339394 ATP5J2P56134 94 aa18.77■□□□□ 0.6
SDC3-202ENST00000339394 MZT1Q08AG7 82 aa18.77■□□□□ 0.6
SDC3-202ENST00000339394 FAM76BQ5HYJ3 339 aa18.77■□□□□ 0.6
SDC3-202ENST00000339394 ZNF529Q6P280 563 aa18.77■□□□□ 0.6
SDC3-202ENST00000339394 WDR86Q86TI4 376 aa18.77■□□□□ 0.6
SDC3-202ENST00000339394 NPRL2Q8WTW4 380 aa18.77■□□□□ 0.6
SDC3-202ENST00000339394 TMIGD2Q96BF3 282 aa18.77■□□□□ 0.6
SDC3-202ENST00000339394 PERPQ96FX8 193 aa18.77■□□□□ 0.6
SDC3-202ENST00000339394 SLC7A11Q9UPY5 501 aa18.77■□□□□ 0.6
SDC3-202ENST00000339394 SULT1B1O43704 296 aa18.76■□□□□ 0.59
SDC3-202ENST00000339394 PTBP3O95758 552 aaKnown RBP18.76■□□□□ 0.59
SDC3-202ENST00000339394 ATF1P18846 271 aa18.76■□□□□ 0.59
SDC3-202ENST00000339394 GNG3P63215 75 aa18.76■□□□□ 0.59
SDC3-202ENST00000339394 CNN3Q15417 329 aaKnown RBP18.76■□□□□ 0.59
SDC3-202ENST00000339394 MPPED2Q15777 294 aa18.76■□□□□ 0.59
SDC3-202ENST00000339394 PRAMEF6Q5VXH4 476 aa18.76■□□□□ 0.59
SDC3-202ENST00000339394 OR51A2Q8NGJ7 313 aa18.76■□□□□ 0.59
SDC3-202ENST00000339394 GCM1Q9NP62 436 aa18.76■□□□□ 0.59
SDC3-202ENST00000339394 CKLFQ9UBR5 152 aa18.76■□□□□ 0.59
SDC3-202ENST00000339394 SCOCQ9UIL1 159 aa18.76■□□□□ 0.59
SDC3-202ENST00000339394 TRAV8-7A0A075B6U6 113 aa18.76■□□□□ 0.59
SDC3-202ENST00000339394 TRDV1A0A1B0GX56 115 aa18.76■□□□□ 0.59
SDC3-202ENST00000339394 OR5B21A6NL26 309 aa18.76■□□□□ 0.59
SDC3-202ENST00000339394 ALX3O95076 343 aa18.76■□□□□ 0.59
SDC3-202ENST00000339394 GRPP07492 148 aa18.76■□□□□ 0.59
SDC3-202ENST00000339394 UCHL1P09936 223 aa18.76■□□□□ 0.59
SDC3-202ENST00000339394 OCMP0CE72 109 aaPredicted RBP18.76■□□□□ 0.59
SDC3-202ENST00000339394 IGFBP3P17936 291 aaPredicted RBP18.76■□□□□ 0.59
SDC3-202ENST00000339394 RAB3AP20336 220 aa18.76■□□□□ 0.59
SDC3-202ENST00000339394 GATA4P43694 442 aa18.76■□□□□ 0.59
SDC3-202ENST00000339394 ALDH3B2P48448 385 aa18.76■□□□□ 0.59
SDC3-202ENST00000339394 FUT6P51993 359 aa18.76■□□□□ 0.59
SDC3-202ENST00000339394 ZNF154Q13106 437 aa18.76■□□□□ 0.59
SDC3-202ENST00000339394 OR1M1Q8NGA1 313 aa18.76■□□□□ 0.59
SDC3-202ENST00000339394 OR13F1Q8NGS4 319 aa18.76■□□□□ 0.59
SDC3-202ENST00000339394 TRMT10AQ8TBZ6 339 aaKnown RBP18.76■□□□□ 0.59
SDC3-202ENST00000339394 PHYHIPQ92561 330 aa18.76■□□□□ 0.59
SDC3-202ENST00000339394 OR51E2Q9H255 320 aa18.76■□□□□ 0.59
SDC3-202ENST00000339394 TREM2Q9NZC2 230 aa18.76■□□□□ 0.59
SDC3-202ENST00000339394 NOTCH2Q04721 2471 aa18.75■□□□□ 0.59
SDC3-202ENST00000339394 FAM230AA0A1W2PPH8 454 aa18.75■□□□□ 0.59
SDC3-202ENST00000339394 PQLC2LA1A4F0 135 aa18.75■□□□□ 0.59
SDC3-202ENST00000339394 CDC14BO60729 498 aa18.75■□□□□ 0.59
SDC3-202ENST00000339394 GPX5O75715 221 aa18.75■□□□□ 0.59
SDC3-202ENST00000339394 DAOP14920 347 aa18.75■□□□□ 0.59
SDC3-202ENST00000339394 FSTP19883 344 aa18.75■□□□□ 0.59
SDC3-202ENST00000339394 GALP22466 123 aa18.75■□□□□ 0.59
SDC3-202ENST00000339394 AZGP1P25311 298 aaKnown RBP18.75■□□□□ 0.59
SDC3-202ENST00000339394 TGIF2LYQ8IUE0 185 aa18.75■□□□□ 0.59
SDC3-202ENST00000339394 SPSB1Q96BD6 273 aa18.75■□□□□ 0.59
SDC3-202ENST00000339394 YIPF6Q96EC8 236 aa18.75■□□□□ 0.59
SDC3-202ENST00000339394 UFSP2Q9NUQ7 469 aa18.75■□□□□ 0.59
SDC3-202ENST00000339394 STUB1Q9UNE7 303 aa18.75■□□□□ 0.59
SDC3-202ENST00000339394 FOXJ3Q9UPW0 622 aa18.75■□□□□ 0.59
SDC3-202ENST00000339394 PPP1R3CQ9UQK1 317 aa18.75■□□□□ 0.59
SDC3-202ENST00000339394 TMEM210A6NLX4 147 aa18.74■□□□□ 0.59
SDC3-202ENST00000339394 LYNX1G3V0Z9 82 aa18.74■□□□□ 0.59
SDC3-202ENST00000339394 LYNX1P0DP58 116 aa18.74■□□□□ 0.59
SDC3-202ENST00000339394 PRKACBP22694 351 aa18.74■□□□□ 0.59
SDC3-202ENST00000339394 GADD45AP24522 165 aa18.74■□□□□ 0.59
SDC3-202ENST00000339394 COL8A2P25067 703 aa18.74■□□□□ 0.59
SDC3-202ENST00000339394 PPP3R1P63098 170 aa18.74■□□□□ 0.59
SDC3-202ENST00000339394 HNRNPA0Q13151 305 aaKnown RBP18.74■□□□□ 0.59
SDC3-202ENST00000339394 HSD17B12Q53GQ0 312 aa18.74■□□□□ 0.59
SDC3-202ENST00000339394 MOGAT3Q86VF5 341 aa18.74■□□□□ 0.59
SDC3-202ENST00000339394 DNAAF1Q8NEP3 725 aa18.74■□□□□ 0.59
SDC3-202ENST00000339394 BORCS8Q96FH0 119 aa18.74■□□□□ 0.59
SDC3-202ENST00000339394 BARX1Q9HBU1 254 aaPredicted RBP18.74■□□□□ 0.59
SDC3-202ENST00000339394 CACNG2Q9Y698 323 aa18.74■□□□□ 0.59
SDC3-202ENST00000339394 SETXQ7Z333 2677 aaKnown RBP18.73■□□□□ 0.59
SDC3-202ENST00000339394 IGKV1-27A0A075B6S5 117 aa18.73■□□□□ 0.59
SDC3-202ENST00000339394 IGHV1-69-2A0A0G2JMI3 117 aa18.73■□□□□ 0.59
SDC3-202ENST00000339394 SSX4O60224 188 aa18.73■□□□□ 0.59
SDC3-202ENST00000339394 SRMP19623 302 aa18.73■□□□□ 0.59
SDC3-202ENST00000339394 RBMXP38159 391 aaKnown RBP18.73■□□□□ 0.59
SDC3-202ENST00000339394 RPL5P46777 297 aaKnown RBP18.73■□□□□ 0.59
SDC3-202ENST00000339394 MRPS11P82912 194 aaKnown RBP18.73■□□□□ 0.59
SDC3-202ENST00000339394 C11orf53Q8IXP5 236 aa18.73■□□□□ 0.59
SDC3-202ENST00000339394 LRRC75A-AS1Q8N1F1 130 aa18.73■□□□□ 0.59
SDC3-202ENST00000339394 ZNF420Q8TAQ5 688 aaPredicted RBP18.73■□□□□ 0.59
SDC3-202ENST00000339394 CCL17Q92583 94 aa18.73■□□□□ 0.59
SDC3-202ENST00000339394 RDH5Q92781 318 aa18.73■□□□□ 0.59
SDC3-202ENST00000339394 ERGIC1Q969X5 290 aa18.73■□□□□ 0.59
SDC3-202ENST00000339394 OR51I2Q9H344 312 aa18.73■□□□□ 0.59
SDC3-202ENST00000339394 EXOSC4Q9NPD3 245 aaKnown RBP18.73■□□□□ 0.59
SDC3-202ENST00000339394 TMEM138Q9NPI0 162 aa18.73■□□□□ 0.59
SDC3-202ENST00000339394 CDIPTO14735 213 aa18.72■□□□□ 0.59
SDC3-202ENST00000339394 ARL6IP5O75915 188 aa18.72■□□□□ 0.59
SDC3-202ENST00000339394 CALRP27797 417 aaKnown RBP18.72■□□□□ 0.59
SDC3-202ENST00000339394 FGF9P31371 208 aaPredicted RBP18.72■□□□□ 0.59
SDC3-202ENST00000339394 PMELP40967 661 aa18.72■□□□□ 0.59
SDC3-202ENST00000339394 HAAOP46952 286 aa18.72■□□□□ 0.59
SDC3-202ENST00000339394 RBP2P50120 134 aa18.72■□□□□ 0.59
SDC3-202ENST00000339394 MTCP1P56278 107 aa18.72■□□□□ 0.59
SDC3-202ENST00000339394 C22orf42Q6IC83 251 aa18.72■□□□□ 0.59
SDC3-202ENST00000339394 OR52N4Q8NGI2 321 aa18.72■□□□□ 0.59
SDC3-202ENST00000339394 RPL3LQ92901 407 aaKnown RBP18.72■□□□□ 0.59
SDC3-202ENST00000339394 YIPF5Q969M3 257 aa18.72■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms