RNA–Protein interactions for RNA: ENST00000637053.1

VIM-210, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 508 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-210ENST00000637053 TOMM40LQ969M1 308 aa2.55□□□□□ -2
VIM-210ENST00000637053 PNPLA2Q96AD5 504 aa2.55□□□□□ -2
VIM-210ENST00000637053 GALMQ96C23 342 aa2.55□□□□□ -2
VIM-210ENST00000637053 LRRC58Q96CX6 371 aa2.55□□□□□ -2
VIM-210ENST00000637053 ZNF354BQ96LW1 612 aa2.55□□□□□ -2
VIM-210ENST00000637053 ZNF778Q96MU6 729 aa2.55□□□□□ -2
VIM-210ENST00000637053 OR4F4Q96R69 305 aa2.55□□□□□ -2
VIM-210ENST00000637053 NODALQ96S42 347 aa2.55□□□□□ -2
VIM-210ENST00000637053 CSF3RQ99062 836 aa2.55□□□□□ -2
VIM-210ENST00000637053 GABRG3Q99928 467 aa2.55□□□□□ -2
VIM-210ENST00000637053 FOXC2Q99958 501 aa2.55□□□□□ -2
VIM-210ENST00000637053 CMSS1Q9BQ75 279 aaKnown RBP2.55□□□□□ -2
VIM-210ENST00000637053 AGMATQ9BSE5 352 aa2.55□□□□□ -2
VIM-210ENST00000637053 CABLES2Q9BTV7 478 aa2.55□□□□□ -2
VIM-210ENST00000637053 RIOK2Q9BVS4 552 aaKnown RBP2.55□□□□□ -2
VIM-210ENST00000637053 GATA5Q9BWX5 397 aaPredicted RBP2.55□□□□□ -2
VIM-210ENST00000637053 CIPCQ9C0C6 399 aa2.55□□□□□ -2
VIM-210ENST00000637053 NPFFR1Q9GZQ6 430 aa2.55□□□□□ -2
VIM-210ENST00000637053 MAP1LC3BQ9GZQ8 125 aa2.55□□□□□ -2
VIM-210ENST00000637053 DCSTAMPQ9H295 470 aa2.55□□□□□ -2
VIM-210ENST00000637053 OR51J1Q9H342 316 aa2.55□□□□□ -2
VIM-210ENST00000637053 FNDC4Q9H6D8 234 aaPredicted RBP2.55□□□□□ -2
VIM-210ENST00000637053 SLC25A19Q9HC21 320 aa2.55□□□□□ -2
VIM-210ENST00000637053 ACKR4Q9NPB9 350 aa2.55□□□□□ -2
VIM-210ENST00000637053 A4GALTQ9NPC4 353 aa2.55□□□□□ -2
VIM-210ENST00000637053 FOXJ2Q9P0K8 574 aa2.55□□□□□ -2
VIM-210ENST00000637053 Q9UF83 564 aa2.55□□□□□ -2
VIM-210ENST00000637053 GNPTGQ9UJJ9 305 aa2.55□□□□□ -2
VIM-210ENST00000637053 LSM5Q9Y4Y9 91 aaKnown RBP2.55□□□□□ -2
VIM-210ENST00000637053 OARD1Q9Y530 152 aa2.55□□□□□ -2
VIM-210ENST00000637053 HS3ST3B1Q9Y662 390 aa2.55□□□□□ -2
VIM-210ENST00000637053 WSB1Q9Y6I7 421 aa2.55□□□□□ -2
VIM-210ENST00000637053 SYNJ2O15056 1496 aa2.54□□□□□ -2
VIM-210ENST00000637053 ARAP1Q96P48 1450 aa2.54□□□□□ -2
VIM-210ENST00000637053 BCL9O00512 1426 aa2.54□□□□□ -2
VIM-210ENST00000637053 CPSF1Q10570 1443 aaKnown RBP2.54□□□□□ -2
VIM-210ENST00000637053 RRBP1Q9P2E9 1410 aaKnown RBP2.54□□□□□ -2
VIM-210ENST00000637053 CNTNAP1P78357 1384 aa2.54□□□□□ -2
VIM-210ENST00000637053 PALLDQ8WX93 1383 aa2.54□□□□□ -2
VIM-210ENST00000637053 A0A087WX48 190 aa2.54□□□□□ -2
VIM-210ENST00000637053 MEIKINA0A087WXM9 373 aa2.54□□□□□ -2
VIM-210ENST00000637053 A0A096LPI6 279 aa2.54□□□□□ -2
VIM-210ENST00000637053 A0A1B0GTW7 788 aa2.54□□□□□ -2
VIM-210ENST00000637053 A0A1W2PP11 408 aa2.54□□□□□ -2
VIM-210ENST00000637053 A0A1W2PPI3 338 aa2.54□□□□□ -2
VIM-210ENST00000637053 DAPL1A0PJW8 107 aa2.54□□□□□ -2
VIM-210ENST00000637053 MEIOCA2RUB1 952 aa2.54□□□□□ -2
VIM-210ENST00000637053 ISPDA4D126 451 aa2.54□□□□□ -2
VIM-210ENST00000637053 NKX2-6A6NCS4 301 aa2.54□□□□□ -2
VIM-210ENST00000637053 OR5H1A6NKK0 313 aa2.54□□□□□ -2
VIM-210ENST00000637053 A8MVM7 634 aa2.54□□□□□ -2
VIM-210ENST00000637053 C2CD4DB7Z1M9 353 aa2.54□□□□□ -2
VIM-210ENST00000637053 TRIM49D1C9J1S8 452 aa2.54□□□□□ -2
VIM-210ENST00000637053 F5H5K5 113 aa2.54□□□□□ -2
VIM-210ENST00000637053 H3BSA7 217 aa2.54□□□□□ -2
VIM-210ENST00000637053 J3KR12 359 aa2.54□□□□□ -2
VIM-210ENST00000637053 GAPDHSO14556 408 aaPredicted RBP2.54□□□□□ -2
VIM-210ENST00000637053 DEGS1O15121 323 aa2.54□□□□□ -2
VIM-210ENST00000637053 HMGB3O15347 200 aaKnown RBP2.54□□□□□ -2
VIM-210ENST00000637053 MBTPS2O43462 519 aa2.54□□□□□ -2
VIM-210ENST00000637053 SOX15O60248 233 aa2.54□□□□□ -2
VIM-210ENST00000637053 MFAP3LO75121 409 aa2.54□□□□□ -2
VIM-210ENST00000637053 NEURL1O76050 574 aa2.54□□□□□ -2
VIM-210ENST00000637053 KLF8O95600 359 aaPredicted RBP2.54□□□□□ -2
VIM-210ENST00000637053 PTTG1O95997 202 aa2.54□□□□□ -2
VIM-210ENST00000637053 PLAUP00749 431 aa2.54□□□□□ -2
VIM-210ENST00000637053 OAS1P00973 400 aaKnown RBP2.54□□□□□ -2
VIM-210ENST00000637053 IFNA17P01571 189 aa2.54□□□□□ -2
VIM-210ENST00000637053 SULT1A3P0DMM9 295 aa2.54□□□□□ -2
VIM-210ENST00000637053 SULT1A4P0DMN0 295 aa2.54□□□□□ -2
VIM-210ENST00000637053 ACP2P11117 423 aa2.54□□□□□ -2
VIM-210ENST00000637053 IL1RNP18510 177 aa2.54□□□□□ -2
VIM-210ENST00000637053 PSMB1P20618 241 aaKnown RBP2.54□□□□□ -2
VIM-210ENST00000637053 CD34P28906 385 aa2.54□□□□□ -2
VIM-210ENST00000637053 RPA3P35244 121 aaPredicted RBP2.54□□□□□ -2
VIM-210ENST00000637053 GGT2P36268 569 aa2.54□□□□□ -2
VIM-210ENST00000637053 PPP3R1P63098 170 aa2.54□□□□□ -2
VIM-210ENST00000637053 CX3CL1P78423 397 aa2.54□□□□□ -2
VIM-210ENST00000637053 MRPS10P82664 201 aaKnown RBP2.54□□□□□ -2
VIM-210ENST00000637053 BAXQ07812 192 aa2.54□□□□□ -2
VIM-210ENST00000637053 ST3GAL4Q11206 333 aa2.54□□□□□ -2
VIM-210ENST00000637053 RAB40BQ12829 278 aa2.54□□□□□ -2
VIM-210ENST00000637053 GNMTQ14749 295 aa2.54□□□□□ -2
VIM-210ENST00000637053 OPCMLQ14982 345 aa2.54□□□□□ -2
VIM-210ENST00000637053 QPRTQ15274 297 aa2.54□□□□□ -2
VIM-210ENST00000637053 NEDD8Q15843 81 aa2.54□□□□□ -2
VIM-210ENST00000637053 ZNF239Q16600 458 aaKnown RBP2.54□□□□□ -2
VIM-210ENST00000637053 SLC25A35Q3KQZ1 300 aa2.54□□□□□ -2
VIM-210ENST00000637053 PARP15Q460N3 678 aa2.54□□□□□ -2
VIM-210ENST00000637053 LRRC37A5PQ49AS3 106 aa2.54□□□□□ -2
VIM-210ENST00000637053 PABPC1L2AQ5JQF8 200 aa2.54□□□□□ -2
VIM-210ENST00000637053 FNBP1LQ5T0N5 605 aa2.54□□□□□ -2
VIM-210ENST00000637053 DCST2Q5T1A1 773 aa2.54□□□□□ -2
VIM-210ENST00000637053 FAM162BQ5T6X4 162 aa2.54□□□□□ -2
VIM-210ENST00000637053 FAM27D1Q5T7N8 215 aa2.54□□□□□ -2
VIM-210ENST00000637053 PLPP4Q5VZY2 271 aa2.54□□□□□ -2
VIM-210ENST00000637053 OTPQ5XKR4 325 aa2.54□□□□□ -2
VIM-210ENST00000637053 LAMTOR1Q6IAA8 161 aa2.54□□□□□ -2
VIM-210ENST00000637053 RWDD4Q6NW29 188 aaKnown RBP2.54□□□□□ -2
VIM-210ENST00000637053 SFXN4Q6P4A7 337 aa2.54□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms