RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 CPEP16870 476 aa16.72■□□□□ 0.27
UPF3A-211ENST00000618700 TNFSF4P23510 183 aa16.72■□□□□ 0.27
UPF3A-211ENST00000618700 GNALP38405 381 aa16.72■□□□□ 0.27
UPF3A-211ENST00000618700 CCL8P80075 99 aa16.72■□□□□ 0.27
UPF3A-211ENST00000618700 TNFAIP6P98066 277 aaPredicted RBP16.72■□□□□ 0.27
UPF3A-211ENST00000618700 TSTQ16762 297 aaKnown RBP16.72■□□□□ 0.27
UPF3A-211ENST00000618700 SPRNQ5BIV9 151 aa16.72■□□□□ 0.27
UPF3A-211ENST00000618700 YIF1BQ5BJH7 314 aa16.72■□□□□ 0.27
UPF3A-211ENST00000618700 CLVS2Q5SYC1 327 aa16.72■□□□□ 0.27
UPF3A-211ENST00000618700 OR13C3Q8NGS6 347 aa16.72■□□□□ 0.27
UPF3A-211ENST00000618700 OR13C5Q8NGS8 318 aa16.72■□□□□ 0.27
UPF3A-211ENST00000618700 HPSE2Q8WWQ2 592 aa16.72■□□□□ 0.27
UPF3A-211ENST00000618700 ITPKCQ96DU7 683 aa16.72■□□□□ 0.27
UPF3A-211ENST00000618700 ADAT3Q96EY9 351 aaPredicted RBP16.72■□□□□ 0.27
UPF3A-211ENST00000618700 PERPQ96FX8 193 aa16.72■□□□□ 0.27
UPF3A-211ENST00000618700 MEGF10Q96KG7 1140 aa16.72■□□□□ 0.27
UPF3A-211ENST00000618700 ZNF275Q9NSD4 429 aaPredicted RBP16.72■□□□□ 0.27
UPF3A-211ENST00000618700 IL19Q9UHD0 177 aa16.72■□□□□ 0.27
UPF3A-211ENST00000618700 AKAP9Q99996 3911 aa16.72■□□□□ 0.27
UPF3A-211ENST00000618700 ARID1AO14497 2285 aa16.72■□□□□ 0.27
UPF3A-211ENST00000618700 ZNF850A8MQ14 1090 aa16.71■□□□□ 0.27
UPF3A-211ENST00000618700 CD200P41217 278 aa16.71■□□□□ 0.27
UPF3A-211ENST00000618700 ATP5J2P56134 94 aa16.71■□□□□ 0.27
UPF3A-211ENST00000618700 MAB21L1Q13394 359 aa16.71■□□□□ 0.27
UPF3A-211ENST00000618700 LIPKQ5VXJ0 399 aa16.71■□□□□ 0.27
UPF3A-211ENST00000618700 KCTD8Q6ZWB6 473 aa16.71■□□□□ 0.27
UPF3A-211ENST00000618700 PHC2Q8IXK0 858 aa16.71■□□□□ 0.27
UPF3A-211ENST00000618700 ZDHHC23Q8IYP9 409 aa16.71■□□□□ 0.27
UPF3A-211ENST00000618700 CELF2-AS1Q8N7Q2 184 aa16.71■□□□□ 0.27
UPF3A-211ENST00000618700 SPERTQ8NA61 448 aa16.71■□□□□ 0.27
UPF3A-211ENST00000618700 PP6455Q8WZ26 134 aa16.71■□□□□ 0.27
UPF3A-211ENST00000618700 OR5P3Q8WZ94 311 aa16.71■□□□□ 0.27
UPF3A-211ENST00000618700 PIGCQ92535 297 aa16.71■□□□□ 0.27
UPF3A-211ENST00000618700 FGGYQ96C11 551 aa16.71■□□□□ 0.27
UPF3A-211ENST00000618700 OR2V2Q96R30 315 aa16.71■□□□□ 0.27
UPF3A-211ENST00000618700 CHST5Q9GZS9 411 aa16.71■□□□□ 0.27
UPF3A-211ENST00000618700 FGF23Q9GZV9 251 aaPredicted RBP16.71■□□□□ 0.27
UPF3A-211ENST00000618700 SAP30LQ9HAJ7 183 aa16.71■□□□□ 0.27
UPF3A-211ENST00000618700 BARX1Q9HBU1 254 aaPredicted RBP16.71■□□□□ 0.27
UPF3A-211ENST00000618700 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP16.7■□□□□ 0.26
UPF3A-211ENST00000618700 A6NIN4 97 aa16.7■□□□□ 0.26
UPF3A-211ENST00000618700 LY6HO94772 140 aa16.7■□□□□ 0.26
UPF3A-211ENST00000618700 PTBP3O95758 552 aaKnown RBP16.7■□□□□ 0.26
UPF3A-211ENST00000618700 SMIM18P0DKX4 95 aa16.7■□□□□ 0.26
UPF3A-211ENST00000618700 TESK1Q15569 626 aa16.7■□□□□ 0.26
UPF3A-211ENST00000618700 ARMCX4Q5H9R4 360 aa16.7■□□□□ 0.26
UPF3A-211ENST00000618700 PARP16Q8N5Y8 322 aa16.7■□□□□ 0.26
UPF3A-211ENST00000618700 TSEN15Q8WW01 171 aaKnown RBP16.7■□□□□ 0.26
UPF3A-211ENST00000618700 ITLN1Q8WWA0 313 aa16.7■□□□□ 0.26
UPF3A-211ENST00000618700 EGLN1Q9GZT9 426 aa16.7■□□□□ 0.26
UPF3A-211ENST00000618700 CXXC4Q9H2H0 198 aa16.7■□□□□ 0.26
UPF3A-211ENST00000618700 DHDHQ9UQ10 334 aa16.7■□□□□ 0.26
UPF3A-211ENST00000618700 CHD3Q12873 2000 aaKnown RBP16.7■□□□□ 0.26
UPF3A-211ENST00000618700 LOC100289279A0A1B0GTE1 492 aa16.69■□□□□ 0.26
UPF3A-211ENST00000618700 ANKRD61A6NGH8 418 aa16.69■□□□□ 0.26
UPF3A-211ENST00000618700 ANXA2P2A6NMY6 339 aa16.69■□□□□ 0.26
UPF3A-211ENST00000618700 INMTO95050 263 aa16.69■□□□□ 0.26
UPF3A-211ENST00000618700 NRASP01111 189 aa16.69■□□□□ 0.26
UPF3A-211ENST00000618700 ZNF20P17024 532 aa16.69■□□□□ 0.26
UPF3A-211ENST00000618700 PSMB9P28065 219 aa16.69■□□□□ 0.26
UPF3A-211ENST00000618700 GATA4P43694 442 aa16.69■□□□□ 0.26
UPF3A-211ENST00000618700 MRPS11P82912 194 aaKnown RBP16.69■□□□□ 0.26
UPF3A-211ENST00000618700 SSX1Q16384 188 aa16.69■□□□□ 0.26
UPF3A-211ENST00000618700 Q499Y3 187 aa16.69■□□□□ 0.26
UPF3A-211ENST00000618700 CEP78Q5JTW2 689 aa16.69■□□□□ 0.26
UPF3A-211ENST00000618700 SYT6Q5T7P8 510 aaPredicted RBP16.69■□□□□ 0.26
UPF3A-211ENST00000618700 UTS2BQ765I0 119 aa16.69■□□□□ 0.26
UPF3A-211ENST00000618700 MS4A15Q8N5U1 240 aa16.69■□□□□ 0.26
UPF3A-211ENST00000618700 OR8S1Q8NH09 359 aa16.69■□□□□ 0.26
UPF3A-211ENST00000618700 MUL1Q969V5 352 aa16.69■□□□□ 0.26
UPF3A-211ENST00000618700 GPR173Q9NS66 373 aa16.69■□□□□ 0.26
UPF3A-211ENST00000618700 DECR2Q9NUI1 292 aa16.69■□□□□ 0.26
UPF3A-211ENST00000618700 SF3B6Q9Y3B4 125 aaKnown RBP16.69■□□□□ 0.26
UPF3A-211ENST00000618700 SC5DO75845 299 aa16.68■□□□□ 0.26
UPF3A-211ENST00000618700 OCM2P0CE71 109 aa16.68■□□□□ 0.26
UPF3A-211ENST00000618700 SOX2P48431 317 aa16.68■□□□□ 0.26
UPF3A-211ENST00000618700 SRP9P49458 86 aaKnown RBP16.68■□□□□ 0.26
UPF3A-211ENST00000618700 GP2P55259 537 aaKnown RBP16.68■□□□□ 0.26
UPF3A-211ENST00000618700 RPS25P62851 125 aaKnown RBP16.68■□□□□ 0.26
UPF3A-211ENST00000618700 UBE2V2Q15819 145 aa16.68■□□□□ 0.26
UPF3A-211ENST00000618700 NEDD8Q15843 81 aa16.68■□□□□ 0.26
UPF3A-211ENST00000618700 CEACAM21Q3KPI0 293 aa16.68■□□□□ 0.26
UPF3A-211ENST00000618700 PLCXD3Q63HM9 321 aa16.68■□□□□ 0.26
UPF3A-211ENST00000618700 ASPHD2Q6ICH7 369 aa16.68■□□□□ 0.26
UPF3A-211ENST00000618700 MOB3CQ70IA8 216 aa16.68■□□□□ 0.26
UPF3A-211ENST00000618700 WDR86Q86TI4 376 aa16.68■□□□□ 0.26
UPF3A-211ENST00000618700 TMEM106AQ96A25 262 aa16.68■□□□□ 0.26
UPF3A-211ENST00000618700 FOXC2Q99958 501 aa16.68■□□□□ 0.26
UPF3A-211ENST00000618700 MICU1Q9BPX6 476 aa16.68■□□□□ 0.26
UPF3A-211ENST00000618700 TMED9Q9BVK6 235 aa16.68■□□□□ 0.26
UPF3A-211ENST00000618700 RTL8AQ9BWD3 113 aa16.68■□□□□ 0.26
UPF3A-211ENST00000618700 C14orf119Q9NWQ9 140 aa16.68■□□□□ 0.26
UPF3A-211ENST00000618700 NDUFB11Q9NX14 153 aa16.68■□□□□ 0.26
UPF3A-211ENST00000618700 TRBV5-7A0A0A0MS05 114 aa16.67■□□□□ 0.26
UPF3A-211ENST00000618700 ZNF879B4DU55 563 aa16.67■□□□□ 0.26
UPF3A-211ENST00000618700 TPD52L2O43399 206 aaKnown RBP16.67■□□□□ 0.26
UPF3A-211ENST00000618700 RP2O75695 350 aa16.67■□□□□ 0.26
UPF3A-211ENST00000618700 GATBO75879 557 aaKnown RBP16.67■□□□□ 0.26
UPF3A-211ENST00000618700 CD2P06729 351 aa16.67■□□□□ 0.26
UPF3A-211ENST00000618700 DAOP14920 347 aa16.67■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms