RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, human

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UPF1-208	ENST00000600012	USP43	Q70EL4	1123 aa		10.85	□□□□□ -0.67
UPF1-208	ENST00000600012	OR13C3	Q8NGS6	347 aa		10.85	□□□□□ -0.67
UPF1-208	ENST00000600012	OR2AE1	Q8NHA4	323 aa		10.85	□□□□□ -0.67
UPF1-208	ENST00000600012	FAM71F1	Q96KD3	344 aa	Predicted RBP	10.85	□□□□□ -0.67
UPF1-208	ENST00000600012	LYZL4	Q96KX0	146 aa		10.85	□□□□□ -0.67
UPF1-208	ENST00000600012	KCTD7	Q96MP8	289 aa		10.85	□□□□□ -0.67
UPF1-208	ENST00000600012	DERL3	Q96Q80	235 aa		10.85	□□□□□ -0.67
UPF1-208	ENST00000600012	OR10A2	Q9H208	303 aa		10.85	□□□□□ -0.67
UPF1-208	ENST00000600012	OR51B6	Q9H340	312 aa		10.85	□□□□□ -0.67
UPF1-208	ENST00000600012	NOX4	Q9NPH5	578 aa		10.85	□□□□□ -0.67
UPF1-208	ENST00000600012	OBP2B	Q9NPH6	170 aa		10.85	□□□□□ -0.67
UPF1-208	ENST00000600012	GPR84	Q9NQS5	396 aa		10.85	□□□□□ -0.67
UPF1-208	ENST00000600012	HHLA2	Q9UM44	414 aa		10.85	□□□□□ -0.67
UPF1-208	ENST00000600012	DHDH	Q9UQ10	334 aa		10.85	□□□□□ -0.67
UPF1-208	ENST00000600012	GSTK1	Q9Y2Q3	226 aa		10.85	□□□□□ -0.67
UPF1-208	ENST00000600012	IGHV1-18	A0A0C4DH31	117 aa		10.84	□□□□□ -0.67
UPF1-208	ENST00000600012	ATP6V1G2-DDX39B	F2Z307	99 aa		10.84	□□□□□ -0.67
UPF1-208	ENST00000600012	NDUFS8	O00217	210 aa		10.84	□□□□□ -0.67
UPF1-208	ENST00000600012	PIN1P1	O15428	100 aa		10.84	□□□□□ -0.67
UPF1-208	ENST00000600012	SYT7	O43581	403 aa		10.84	□□□□□ -0.67
UPF1-208	ENST00000600012	IGKV3-15	P01624	115 aa		10.84	□□□□□ -0.67
UPF1-208	ENST00000600012	IGLV3-1	P01715	115 aa		10.84	□□□□□ -0.67
UPF1-208	ENST00000600012	UCHL1	P09936	223 aa		10.84	□□□□□ -0.67
UPF1-208	ENST00000600012	CECR9	P0C854	216 aa		10.84	□□□□□ -0.67
UPF1-208	ENST00000600012	ZNF182	P17025	639 aa	Predicted RBP	10.84	□□□□□ -0.67
UPF1-208	ENST00000600012	SDC2	P34741	201 aa		10.84	□□□□□ -0.67
UPF1-208	ENST00000600012	WNT5A	P41221	380 aa		10.84	□□□□□ -0.67
UPF1-208	ENST00000600012	PDLIM4	P50479	330 aa		10.84	□□□□□ -0.67
UPF1-208	ENST00000600012	PRSS12	P56730	875 aa		10.84	□□□□□ -0.67
UPF1-208	ENST00000600012	TBC1D28	Q2M2D7	210 aa		10.84	□□□□□ -0.67
UPF1-208	ENST00000600012	KRTAP24-1	Q3LI83	254 aa		10.84	□□□□□ -0.67
UPF1-208	ENST00000600012	HSD17B12	Q53GQ0	312 aa		10.84	□□□□□ -0.67
UPF1-208	ENST00000600012	RFPL4B	Q6ZWI9	263 aa		10.84	□□□□□ -0.67
UPF1-208	ENST00000600012	OR52H1	Q8NGJ2	320 aa		10.84	□□□□□ -0.67
UPF1-208	ENST00000600012	DYNC2LI1	Q8TCX1	351 aa		10.84	□□□□□ -0.67
UPF1-208	ENST00000600012	TMEM106A	Q96A25	262 aa		10.84	□□□□□ -0.67
UPF1-208	ENST00000600012	C1QTNF5	Q9BXJ0	243 aa		10.84	□□□□□ -0.67
UPF1-208	ENST00000600012	POFUT1	Q9H488	388 aa		10.84	□□□□□ -0.67
UPF1-208	ENST00000600012	CDH20	Q9HBT6	801 aa		10.84	□□□□□ -0.67
UPF1-208	ENST00000600012	KCNS2	Q9ULS6	477 aa		10.84	□□□□□ -0.67
UPF1-208	ENST00000600012	TRBV5-7	A0A0A0MS05	114 aa		10.83	□□□□□ -0.68
UPF1-208	ENST00000600012		A0A0U1RQV5	110 aa		10.83	□□□□□ -0.68
UPF1-208	ENST00000600012	ANKRD61	A6NGH8	418 aa		10.83	□□□□□ -0.68
UPF1-208	ENST00000600012	VWC2L	B2RUY7	222 aa		10.83	□□□□□ -0.68
UPF1-208	ENST00000600012	LY6H	O94772	140 aa		10.83	□□□□□ -0.68
UPF1-208	ENST00000600012	IGLV1-44	P01699	117 aa		10.83	□□□□□ -0.68
UPF1-208	ENST00000600012	SRD5A1	P18405	259 aa		10.83	□□□□□ -0.68
UPF1-208	ENST00000600012	CCL1	P22362	96 aa		10.83	□□□□□ -0.68
UPF1-208	ENST00000600012	MYL9	P24844	172 aa		10.83	□□□□□ -0.68
UPF1-208	ENST00000600012	SWI5	Q1ZZU3	235 aa		10.83	□□□□□ -0.68
UPF1-208	ENST00000600012	FAM166A	Q6J272	317 aa		10.83	□□□□□ -0.68
UPF1-208	ENST00000600012	DOK3	Q7L591	496 aa		10.83	□□□□□ -0.68
UPF1-208	ENST00000600012	ZNF101	Q8IZC7	436 aa		10.83	□□□□□ -0.68
UPF1-208	ENST00000600012	OR1J2	Q8NGS2	313 aa		10.83	□□□□□ -0.68
UPF1-208	ENST00000600012	SGK3	Q96BR1	496 aa		10.83	□□□□□ -0.68
UPF1-208	ENST00000600012	REEP6	Q96HR9	211 aa		10.83	□□□□□ -0.68
UPF1-208	ENST00000600012	PIMREG	Q9BSJ6	248 aa		10.83	□□□□□ -0.68
UPF1-208	ENST00000600012	SP140L	Q9H930	580 aa		10.83	□□□□□ -0.68
UPF1-208	ENST00000600012	MYOZ1	Q9NP98	299 aa	Predicted RBP	10.83	□□□□□ -0.68
UPF1-208	ENST00000600012	SNTG1	Q9NSN8	517 aa		10.83	□□□□□ -0.68
UPF1-208	ENST00000600012	PTTG3P	Q9NZH4	202 aa		10.83	□□□□□ -0.68
UPF1-208	ENST00000600012	PTTG2	Q9NZH5	202 aa		10.83	□□□□□ -0.68
UPF1-208	ENST00000600012	CRNN	Q9UBG3	495 aa	Predicted RBP	10.83	□□□□□ -0.68
UPF1-208	ENST00000600012	TRAV8-7	A0A075B6U6	113 aa		10.82	□□□□□ -0.68
UPF1-208	ENST00000600012		A6NIN4	97 aa		10.82	□□□□□ -0.68
UPF1-208	ENST00000600012	ARL6IP5	O75915	188 aa		10.82	□□□□□ -0.68
UPF1-208	ENST00000600012	NCR1	O76036	304 aa		10.82	□□□□□ -0.68
UPF1-208	ENST00000600012	NGF	P01138	241 aa		10.82	□□□□□ -0.68
UPF1-208	ENST00000600012	HNF1A	P20823	631 aa		10.82	□□□□□ -0.68
UPF1-208	ENST00000600012	PAX7	P23759	505 aa		10.82	□□□□□ -0.68
UPF1-208	ENST00000600012	MAPK3	P27361	379 aa	Predicted RBP	10.82	□□□□□ -0.68
UPF1-208	ENST00000600012	RPS19	P39019	145 aa	Known RBP	10.82	□□□□□ -0.68
UPF1-208	ENST00000600012	NR4A2	P43354	598 aa		10.82	□□□□□ -0.68
UPF1-208	ENST00000600012	MTNR1B	P49286	362 aa		10.82	□□□□□ -0.68
UPF1-208	ENST00000600012	CAV3	P56539	151 aa		10.82	□□□□□ -0.68
UPF1-208	ENST00000600012	SNRPD2	P62316	118 aa	Known RBP	10.82	□□□□□ -0.68
UPF1-208	ENST00000600012	ZNF92	Q03936	586 aa		10.82	□□□□□ -0.68
UPF1-208	ENST00000600012	MST1L	Q2TV78	715 aa		10.82	□□□□□ -0.68
UPF1-208	ENST00000600012	ASPHD2	Q6ICH7	369 aa		10.82	□□□□□ -0.68
UPF1-208	ENST00000600012	COLCA1	Q6ZS62	124 aa		10.82	□□□□□ -0.68
UPF1-208	ENST00000600012	OR14K1	Q8NGZ2	314 aa		10.82	□□□□□ -0.68
UPF1-208	ENST00000600012	APOBEC3D	Q96AK3	386 aa	Predicted RBP	10.82	□□□□□ -0.68
UPF1-208	ENST00000600012	FGGY	Q96C11	551 aa		10.82	□□□□□ -0.68
UPF1-208	ENST00000600012	SORCS2	Q96PQ0	1159 aa		10.82	□□□□□ -0.68
UPF1-208	ENST00000600012	TAS2R4	Q9NYW5	299 aa		10.82	□□□□□ -0.68
UPF1-208	ENST00000600012	NBEAL1	Q6ZS30	2694 aa		10.81	□□□□□ -0.68
UPF1-208	ENST00000600012	LOC100289279	A0A1B0GTE1	492 aa		10.81	□□□□□ -0.68
UPF1-208	ENST00000600012	hCG_38984	A0A1B0GV85	526 aa		10.81	□□□□□ -0.68
UPF1-208	ENST00000600012	LOC390937	A0A1W2PQ73	354 aa		10.81	□□□□□ -0.68
UPF1-208	ENST00000600012	XRCC2	O43543	280 aa		10.81	□□□□□ -0.68
UPF1-208	ENST00000600012	IL1A	P01583	271 aa		10.81	□□□□□ -0.68
UPF1-208	ENST00000600012	CD2	P06729	351 aa		10.81	□□□□□ -0.68
UPF1-208	ENST00000600012	FAM157B	P0CG42	384 aa		10.81	□□□□□ -0.68
UPF1-208	ENST00000600012	ZNF20	P17024	532 aa		10.81	□□□□□ -0.68
UPF1-208	ENST00000600012	CALCR	P30988	508 aa		10.81	□□□□□ -0.68
UPF1-208	ENST00000600012	HNRNPA0	Q13151	305 aa	Known RBP	10.81	□□□□□ -0.68
UPF1-208	ENST00000600012	FAM169B	Q8N8A8	192 aa		10.81	□□□□□ -0.68
UPF1-208	ENST00000600012	PLPP7	Q8NBV4	271 aa		10.81	□□□□□ -0.68
UPF1-208	ENST00000600012	PHYHIP	Q92561	330 aa		10.81	□□□□□ -0.68
UPF1-208	ENST00000600012	ADAT3	Q96EY9	351 aa	Predicted RBP	10.81	□□□□□ -0.68

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