RNA–Protein interactions for RNA: ENST00000598907.5

SHKBP1-218, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 738 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-218ENST00000598907 NAA40Q86UY6 237 aa11.71□□□□□ -0.53
SHKBP1-218ENST00000598907 SLC30A7Q8NEW0 376 aa11.71□□□□□ -0.53
SHKBP1-218ENST00000598907 IL17RDQ8NFM7 739 aa11.71□□□□□ -0.53
SHKBP1-218ENST00000598907 GATAD2BQ8WXI9 593 aa11.71□□□□□ -0.53
SHKBP1-218ENST00000598907 FCGR1BQ92637 280 aa11.71□□□□□ -0.53
SHKBP1-218ENST00000598907 RORBQ92753 470 aa11.71□□□□□ -0.53
SHKBP1-218ENST00000598907 SPTSSAQ969W0 71 aa11.71□□□□□ -0.53
SHKBP1-218ENST00000598907 FAM206AQ9NX38 181 aa11.71□□□□□ -0.53
SHKBP1-218ENST00000598907 NUP50Q9UKX7 468 aa11.71□□□□□ -0.53
SHKBP1-218ENST00000598907 FZR1Q9UM11 496 aa11.71□□□□□ -0.53
SHKBP1-218ENST00000598907 MMP24Q9Y5R2 645 aa11.71□□□□□ -0.53
SHKBP1-218ENST00000598907 R4GMQ9 66 aa11.71□□□□□ -0.53
SHKBP1-218ENST00000598907 ACOD1A6NK06 481 aa11.7□□□□□ -0.54
SHKBP1-218ENST00000598907 M0R135 149 aa11.7□□□□□ -0.54
SHKBP1-218ENST00000598907 OGG1O15527 345 aa11.7□□□□□ -0.54
SHKBP1-218ENST00000598907 IGHV2-5P01817 119 aa11.7□□□□□ -0.54
SHKBP1-218ENST00000598907 APOC1P02654 83 aa11.7□□□□□ -0.54
SHKBP1-218ENST00000598907 LCKP06239 509 aa11.7□□□□□ -0.54
SHKBP1-218ENST00000598907 NAT2P11245 290 aa11.7□□□□□ -0.54
SHKBP1-218ENST00000598907 HSD11B1P28845 292 aa11.7□□□□□ -0.54
SHKBP1-218ENST00000598907 APLNRP35414 380 aa11.7□□□□□ -0.54
SHKBP1-218ENST00000598907 GDI2P50395 445 aaKnown RBP11.7□□□□□ -0.54
SHKBP1-218ENST00000598907 PRKXP51817 358 aa11.7□□□□□ -0.54
SHKBP1-218ENST00000598907 GBX2P52951 348 aaPredicted RBP11.7□□□□□ -0.54
SHKBP1-218ENST00000598907 RAG2P55895 527 aa11.7□□□□□ -0.54
SHKBP1-218ENST00000598907 TPTEP56180 551 aa11.7□□□□□ -0.54
SHKBP1-218ENST00000598907 PSMA6P60900 246 aaKnown RBP11.7□□□□□ -0.54
SHKBP1-218ENST00000598907 TBC1D28Q2M2D7 210 aa11.7□□□□□ -0.54
SHKBP1-218ENST00000598907 BEAN1Q3B7T3 259 aa11.7□□□□□ -0.54
SHKBP1-218ENST00000598907 ALKBH6Q3KRA9 238 aa11.7□□□□□ -0.54
SHKBP1-218ENST00000598907 CCDC58Q4VC31 144 aa11.7□□□□□ -0.54
SHKBP1-218ENST00000598907 VAX1Q5SQQ9 334 aa11.7□□□□□ -0.54
SHKBP1-218ENST00000598907 ZNF367Q7RTV3 350 aa11.7□□□□□ -0.54
SHKBP1-218ENST00000598907 FAM220AQ7Z4H9 259 aa11.7□□□□□ -0.54
SHKBP1-218ENST00000598907 KLBQ86Z14 1044 aa11.7□□□□□ -0.54
SHKBP1-218ENST00000598907 PAQR4Q8N4S7 273 aaPredicted RBP11.7□□□□□ -0.54
SHKBP1-218ENST00000598907 OR1J2Q8NGS2 313 aa11.7□□□□□ -0.54
SHKBP1-218ENST00000598907 MRAPQ8TCY5 172 aa11.7□□□□□ -0.54
SHKBP1-218ENST00000598907 ZNF799Q96GE5 643 aa11.7□□□□□ -0.54
SHKBP1-218ENST00000598907 COG8Q96MW5 612 aa11.7□□□□□ -0.54
SHKBP1-218ENST00000598907 MRPS26Q9BYN8 205 aaKnown RBP11.7□□□□□ -0.54
SHKBP1-218ENST00000598907 MS4A5Q9H3V2 200 aa11.7□□□□□ -0.54
SHKBP1-218ENST00000598907 BEX1Q9HBH7 125 aa11.7□□□□□ -0.54
SHKBP1-218ENST00000598907 TNFRSF19Q9NS68 423 aa11.7□□□□□ -0.54
SHKBP1-218ENST00000598907 MYEF2Q9P2K5 600 aaKnown RBP11.7□□□□□ -0.54
SHKBP1-218ENST00000598907 SIRT4Q9Y6E7 314 aaPredicted RBP11.7□□□□□ -0.54
SHKBP1-218ENST00000598907 IGHV3OR16-10A0A075B7F0 116 aa11.69□□□□□ -0.54
SHKBP1-218ENST00000598907 TMEM269A0A1B0GVZ9 245 aa11.69□□□□□ -0.54
SHKBP1-218ENST00000598907 C5orf49A4QMS7 147 aa11.69□□□□□ -0.54
SHKBP1-218ENST00000598907 F5H5K5 113 aa11.69□□□□□ -0.54
SHKBP1-218ENST00000598907 CCL2P13500 99 aa11.69□□□□□ -0.54
SHKBP1-218ENST00000598907 ATP6V1B1P15313 513 aa11.69□□□□□ -0.54
SHKBP1-218ENST00000598907 ANOS1P23352 680 aa11.69□□□□□ -0.54
SHKBP1-218ENST00000598907 GATA3P23771 443 aa11.69□□□□□ -0.54
SHKBP1-218ENST00000598907 PSMB10P40306 273 aa11.69□□□□□ -0.54
SHKBP1-218ENST00000598907 WNT5AP41221 380 aa11.69□□□□□ -0.54
SHKBP1-218ENST00000598907 CX3CR1P49238 355 aa11.69□□□□□ -0.54
SHKBP1-218ENST00000598907 CCR9P51686 369 aa11.69□□□□□ -0.54
SHKBP1-218ENST00000598907 GTF2A1P52655 376 aaPredicted RBP11.69□□□□□ -0.54
SHKBP1-218ENST00000598907 ZNF121P58317 390 aaPredicted RBP11.69□□□□□ -0.54
SHKBP1-218ENST00000598907 NANOS3P60323 173 aaKnown RBP11.69□□□□□ -0.54
SHKBP1-218ENST00000598907 KRTAP10-3P60369 221 aa11.69□□□□□ -0.54
SHKBP1-218ENST00000598907 GALK2Q01415 458 aa11.69□□□□□ -0.54
SHKBP1-218ENST00000598907 MFGE8Q08431 387 aaPredicted RBP11.69□□□□□ -0.54
SHKBP1-218ENST00000598907 MED22Q15528 200 aa11.69□□□□□ -0.54
SHKBP1-218ENST00000598907 FAM189A2Q15884 450 aa11.69□□□□□ -0.54
SHKBP1-218ENST00000598907 TUSC1Q2TAM9 212 aa11.69□□□□□ -0.54
SHKBP1-218ENST00000598907 ZNF829Q3KNS6 432 aaPredicted RBP11.69□□□□□ -0.54
SHKBP1-218ENST00000598907 SYT6Q5T7P8 510 aaPredicted RBP11.69□□□□□ -0.54
SHKBP1-218ENST00000598907 OLFML2AQ68BL7 652 aa11.69□□□□□ -0.54
SHKBP1-218ENST00000598907 CATSPERDQ86XM0 798 aa11.69□□□□□ -0.54
SHKBP1-218ENST00000598907 ZNF283Q8N7M2 679 aa11.69□□□□□ -0.54
SHKBP1-218ENST00000598907 OR2G2Q8NGZ5 317 aa11.69□□□□□ -0.54
SHKBP1-218ENST00000598907 MUL1Q969V5 352 aa11.69□□□□□ -0.54
SHKBP1-218ENST00000598907 C4orf45Q96LM5 186 aa11.69□□□□□ -0.54
SHKBP1-218ENST00000598907 MGLLQ99685 303 aa11.69□□□□□ -0.54
SHKBP1-218ENST00000598907 FRRS1LQ9P0K9 344 aa11.69□□□□□ -0.54
SHKBP1-218ENST00000598907 NUFIP1Q9UHK0 495 aaKnown RBP11.69□□□□□ -0.54
SHKBP1-218ENST00000598907 SOX21Q9Y651 276 aaPredicted RBP11.69□□□□□ -0.54
SHKBP1-218ENST00000598907 ARHGAP32A7KAX9 2087 aa11.69□□□□□ -0.54
SHKBP1-218ENST00000598907 A0A1W2PPW3 197 aa11.68□□□□□ -0.54
SHKBP1-218ENST00000598907 CLDN34H7C241 214 aa11.68□□□□□ -0.54
SHKBP1-218ENST00000598907 INMTO95050 263 aa11.68□□□□□ -0.54
SHKBP1-218ENST00000598907 RPP14O95059 124 aaKnown RBP11.68□□□□□ -0.54
SHKBP1-218ENST00000598907 TFAP2AP05549 437 aa11.68□□□□□ -0.54
SHKBP1-218ENST00000598907 CD1AP06126 327 aa11.68□□□□□ -0.54
SHKBP1-218ENST00000598907 RAD52P43351 418 aa11.68□□□□□ -0.54
SHKBP1-218ENST00000598907 MAGEB1P43366 347 aa11.68□□□□□ -0.54
SHKBP1-218ENST00000598907 KIR3DL2P43630 455 aa11.68□□□□□ -0.54
SHKBP1-218ENST00000598907 RGS6P49758 472 aa11.68□□□□□ -0.54
SHKBP1-218ENST00000598907 TAS2R43P59537 309 aa11.68□□□□□ -0.54
SHKBP1-218ENST00000598907 MLLT11Q13015 90 aaPredicted RBP11.68□□□□□ -0.54
SHKBP1-218ENST00000598907 GPR50Q13585 617 aa11.68□□□□□ -0.54
SHKBP1-218ENST00000598907 TPBGQ13641 420 aa11.68□□□□□ -0.54
SHKBP1-218ENST00000598907 ALKBH1Q13686 389 aaKnown RBP11.68□□□□□ -0.54
SHKBP1-218ENST00000598907 CDK5R1Q15078 307 aa11.68□□□□□ -0.54
SHKBP1-218ENST00000598907 KLF17Q5JT82 389 aaPredicted RBP11.68□□□□□ -0.54
SHKBP1-218ENST00000598907 DMKNQ6E0U4 476 aaPredicted RBP11.68□□□□□ -0.54
SHKBP1-218ENST00000598907 RPL22L1Q6P5R6 122 aaKnown RBP11.68□□□□□ -0.54
SHKBP1-218ENST00000598907 LRP11Q86VZ4 500 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms