RNA–Protein interactions for RNA: ENST00000589318.5

DDX39A-209, Transcript of DExD-box helicase 39A, human

TSL 1 (best)

Gene DDX39A, Length 1,903 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX39A-209	ENST00000589318	MGA	Q8IWI9	3026 aa		13.53	□□□□□ -0.24
DDX39A-209	ENST00000589318	FXYD6-FXYD2	A0A087WZ82	144 aa		13.52	□□□□□ -0.24
DDX39A-209	ENST00000589318	ANKRD20A5P	A0PJZ0	165 aa		13.52	□□□□□ -0.24
DDX39A-209	ENST00000589318	TMEM218	A2RU14	115 aa		13.52	□□□□□ -0.24
DDX39A-209	ENST00000589318	RFPL4A	A6NLU0	287 aa		13.52	□□□□□ -0.24
DDX39A-209	ENST00000589318	RFPL4AL1	F8VTS6	287 aa		13.52	□□□□□ -0.24
DDX39A-209	ENST00000589318	SIX6	O95475	246 aa		13.52	□□□□□ -0.24
DDX39A-209	ENST00000589318	C3AR1	Q16581	482 aa		13.52	□□□□□ -0.24
DDX39A-209	ENST00000589318		Q499Y3	187 aa		13.52	□□□□□ -0.24
DDX39A-209	ENST00000589318	TMEM255A	Q5JRV8	349 aa		13.52	□□□□□ -0.24
DDX39A-209	ENST00000589318	ULBP2	Q9BZM5	246 aa		13.52	□□□□□ -0.24
DDX39A-209	ENST00000589318	FXYD6	Q9H0Q3	95 aa		13.52	□□□□□ -0.24
DDX39A-209	ENST00000589318	NELFA	Q9H3P2	528 aa		13.52	□□□□□ -0.24
DDX39A-209	ENST00000589318	PNRC2	Q9NPJ4	139 aa	Known RBP	13.52	□□□□□ -0.24
DDX39A-209	ENST00000589318	ASH2L	Q9UBL3	628 aa		13.52	□□□□□ -0.24
DDX39A-209	ENST00000589318	CARHSP1	Q9Y2V2	147 aa	Known RBP	13.52	□□□□□ -0.24
DDX39A-209	ENST00000589318		R4GMQ9	66 aa		13.52	□□□□□ -0.24
DDX39A-209	ENST00000589318	FREM1	Q5H8C1	2179 aa		13.52	□□□□□ -0.25
DDX39A-209	ENST00000589318	APC2	O95996	2303 aa		13.52	□□□□□ -0.25
DDX39A-209	ENST00000589318	TRGV5	A0A0B4J1U4	118 aa		13.52	□□□□□ -0.25
DDX39A-209	ENST00000589318	TRAV17	A0A0B4J275	112 aa		13.52	□□□□□ -0.25
DDX39A-209	ENST00000589318	EIF3G	O75821	320 aa	Known RBP eCLIP	13.52	□□□□□ -0.25
DDX39A-209	ENST00000589318	PAX6	P26367	422 aa		13.52	□□□□□ -0.25
DDX39A-209	ENST00000589318	ART1	P52961	327 aa		13.52	□□□□□ -0.25
DDX39A-209	ENST00000589318	RAB5B	P61020	215 aa		13.52	□□□□□ -0.25
DDX39A-209	ENST00000589318	LSM6	P62312	80 aa	Known RBP	13.52	□□□□□ -0.25
DDX39A-209	ENST00000589318	ENDOG	Q14249	297 aa	Known RBP	13.52	□□□□□ -0.25
DDX39A-209	ENST00000589318	ZNF345	Q14585	488 aa		13.52	□□□□□ -0.25
DDX39A-209	ENST00000589318	SLC25A35	Q3KQZ1	300 aa		13.52	□□□□□ -0.25
DDX39A-209	ENST00000589318	LINGO2	Q7L985	606 aa		13.52	□□□□□ -0.25
DDX39A-209	ENST00000589318	AAED1	Q7RTV5	226 aa		13.52	□□□□□ -0.25
DDX39A-209	ENST00000589318	ZNF676	Q8N7Q3	588 aa		13.52	□□□□□ -0.25
DDX39A-209	ENST00000589318	TMEM45B	Q96B21	275 aa		13.52	□□□□□ -0.25
DDX39A-209	ENST00000589318	DMRTA2	Q96SC8	542 aa		13.52	□□□□□ -0.25
DDX39A-209	ENST00000589318	COMMD4	Q9H0A8	199 aa		13.52	□□□□□ -0.25
DDX39A-209	ENST00000589318	G6PC2	Q9NQR9	355 aa		13.52	□□□□□ -0.25
DDX39A-209	ENST00000589318	CENPM	Q9NSP4	180 aa		13.52	□□□□□ -0.25
DDX39A-209	ENST00000589318	EMC9	Q9Y3B6	208 aa		13.52	□□□□□ -0.25
DDX39A-209	ENST00000589318	DMXL2	Q8TDJ6	3036 aa		13.52	□□□□□ -0.25
DDX39A-209	ENST00000589318	URB1	O60287	2271 aa	Known RBP	13.52	□□□□□ -0.25
DDX39A-209	ENST00000589318	TRBV5-7	A0A0A0MS05	114 aa		13.51	□□□□□ -0.25
DDX39A-209	ENST00000589318	RER1	O15258	196 aa		13.51	□□□□□ -0.25
DDX39A-209	ENST00000589318	H2BFM	P0C1H6	154 aa		13.51	□□□□□ -0.25
DDX39A-209	ENST00000589318	MSR1	P21757	451 aa		13.51	□□□□□ -0.25
DDX39A-209	ENST00000589318	ODF4	Q2M2E3	257 aa		13.51	□□□□□ -0.25
DDX39A-209	ENST00000589318	LDLRAD3	Q86YD5	345 aa		13.51	□□□□□ -0.25
DDX39A-209	ENST00000589318	FNDC9	Q8TBE3	224 aa		13.51	□□□□□ -0.25
DDX39A-209	ENST00000589318	SGK3	Q96BR1	496 aa		13.51	□□□□□ -0.25
DDX39A-209	ENST00000589318	WDYHV1	Q96HA8	205 aa		13.51	□□□□□ -0.25
DDX39A-209	ENST00000589318	GFI1	Q99684	422 aa		13.51	□□□□□ -0.25
DDX39A-209	ENST00000589318	POLR1D	Q9Y2S0	133 aa		13.51	□□□□□ -0.25
DDX39A-209	ENST00000589318	PRRC2C	Q9Y520	2896 aa	Known RBP	13.51	□□□□□ -0.25
DDX39A-209	ENST00000589318	WISP2	O76076	250 aa		13.51	□□□□□ -0.25
DDX39A-209	ENST00000589318	IGHG3	P01860	377 aa		13.51	□□□□□ -0.25
DDX39A-209	ENST00000589318	ACAA1	P09110	424 aa	Predicted RBP	13.51	□□□□□ -0.25
DDX39A-209	ENST00000589318	ATF1	P18846	271 aa		13.51	□□□□□ -0.25
DDX39A-209	ENST00000589318	SRM	P19623	302 aa		13.51	□□□□□ -0.25
DDX39A-209	ENST00000589318	DCTD	P32321	178 aa		13.51	□□□□□ -0.25
DDX39A-209	ENST00000589318	MMP16	P51512	607 aa		13.51	□□□□□ -0.25
DDX39A-209	ENST00000589318	SGCA	Q16586	387 aa		13.51	□□□□□ -0.25
DDX39A-209	ENST00000589318	RNF212	Q495C1	297 aa		13.51	□□□□□ -0.25
DDX39A-209	ENST00000589318	RNASE12	Q5GAN4	147 aa	Known RBP	13.51	□□□□□ -0.25
DDX39A-209	ENST00000589318	RHOU	Q7L0Q8	258 aa		13.51	□□□□□ -0.25
DDX39A-209	ENST00000589318	PUSL1	Q8N0Z8	303 aa	Known RBP	13.51	□□□□□ -0.25
DDX39A-209	ENST00000589318	SNIP1	Q8TAD8	396 aa	Known RBP	13.51	□□□□□ -0.25
DDX39A-209	ENST00000589318	ZNF671	Q8TAW3	534 aa		13.51	□□□□□ -0.25
DDX39A-209	ENST00000589318	NANP	Q8TBE9	248 aa		13.51	□□□□□ -0.25
DDX39A-209	ENST00000589318	GPR148	Q8TDV2	347 aa		13.51	□□□□□ -0.25
DDX39A-209	ENST00000589318	RAB40A	Q8WXH6	277 aa		13.51	□□□□□ -0.25
DDX39A-209	ENST00000589318	RBM24	Q9BX46	236 aa	Known RBP	13.51	□□□□□ -0.25
DDX39A-209	ENST00000589318	FAM206A	Q9NX38	181 aa		13.51	□□□□□ -0.25
DDX39A-209	ENST00000589318	OR14I1	A6ND48	311 aa		13.5	□□□□□ -0.25
DDX39A-209	ENST00000589318	OR2F2	O95006	317 aa		13.5	□□□□□ -0.25
DDX39A-209	ENST00000589318	SPDEF	O95238	335 aa		13.5	□□□□□ -0.25
DDX39A-209	ENST00000589318	SOX2	P48431	317 aa		13.5	□□□□□ -0.25
DDX39A-209	ENST00000589318	MRPS34	P82930	218 aa	Known RBP	13.5	□□□□□ -0.25
DDX39A-209	ENST00000589318	OR2F1	Q13607	317 aa		13.5	□□□□□ -0.25
DDX39A-209	ENST00000589318	RBMS2	Q15434	407 aa	Known RBP	13.5	□□□□□ -0.25
DDX39A-209	ENST00000589318	IGFL3	Q6UXB1	125 aa		13.5	□□□□□ -0.25
DDX39A-209	ENST00000589318	OR2AK2	Q8NG84	335 aa		13.5	□□□□□ -0.25
DDX39A-209	ENST00000589318	OR2AJ1	Q8NGZ0	328 aa		13.5	□□□□□ -0.25
DDX39A-209	ENST00000589318	ALKBH3	Q96Q83	286 aa	Predicted RBP	13.5	□□□□□ -0.25
DDX39A-209	ENST00000589318	GINS4	Q9BRT9	223 aa		13.5	□□□□□ -0.25
DDX39A-209	ENST00000589318	AUNIP	Q9H7T9	357 aa		13.5	□□□□□ -0.25
DDX39A-209	ENST00000589318	CRLF2	Q9HC73	371 aa		13.5	□□□□□ -0.25
DDX39A-209	ENST00000589318	MCTS1	Q9ULC4	181 aa	Known RBP	13.5	□□□□□ -0.25
DDX39A-209	ENST00000589318	GTF2A1L	Q9UNN4	478 aa		13.5	□□□□□ -0.25
DDX39A-209	ENST00000589318	CEP295	Q9C0D2	2601 aa		13.5	□□□□□ -0.25
DDX39A-209	ENST00000589318	TMEM269	A0A1B0GVZ9	245 aa		13.49	□□□□□ -0.25
DDX39A-209	ENST00000589318	KANTR	A0A1W2PQU2	76 aa		13.49	□□□□□ -0.25
DDX39A-209	ENST00000589318	ZNF878	C9JN71	531 aa		13.49	□□□□□ -0.25
DDX39A-209	ENST00000589318		H3BSH0	61 aa		13.49	□□□□□ -0.25
DDX39A-209	ENST00000589318	HTR3B	O95264	441 aa		13.49	□□□□□ -0.25
DDX39A-209	ENST00000589318	SYNGR4	O95473	234 aa		13.49	□□□□□ -0.25
DDX39A-209	ENST00000589318	SPP1	P10451	314 aa		13.49	□□□□□ -0.25
DDX39A-209	ENST00000589318	SNRPB	P14678	240 aa	Known RBP	13.49	□□□□□ -0.25
DDX39A-209	ENST00000589318	HIST1H3A	P68431	136 aa		13.49	□□□□□ -0.25
DDX39A-209	ENST00000589318	CDNF	Q49AH0	187 aa		13.49	□□□□□ -0.25
DDX39A-209	ENST00000589318	RIPPLY2	Q5TAB7	128 aa		13.49	□□□□□ -0.25
DDX39A-209	ENST00000589318	HIST2H3PS2	Q5TEC6	136 aa		13.49	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms