RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP13.09□□□□□ -0.31
SS18-215ENST00000580642 ATP6V1G2-DDX39BF2Z307 99 aa13.09□□□□□ -0.31
SS18-215ENST00000580642 AZGP1P25311 298 aaKnown RBP13.09□□□□□ -0.31
SS18-215ENST00000580642 GRNP28799 593 aaKnown RBP13.09□□□□□ -0.31
SS18-215ENST00000580642 S100A5P33763 92 aa13.09□□□□□ -0.31
SS18-215ENST00000580642 ZNF93P35789 620 aaPredicted RBP13.09□□□□□ -0.31
SS18-215ENST00000580642 ALDH3B1P43353 468 aa13.09□□□□□ -0.31
SS18-215ENST00000580642 KLF3P57682 345 aaPredicted RBP13.09□□□□□ -0.31
SS18-215ENST00000580642 OR10A3P58181 314 aa13.09□□□□□ -0.31
SS18-215ENST00000580642 SPOCK1Q08629 439 aa13.09□□□□□ -0.31
SS18-215ENST00000580642 LSAMPQ13449 338 aa13.09□□□□□ -0.31
SS18-215ENST00000580642 FAM189A2Q15884 450 aa13.09□□□□□ -0.31
SS18-215ENST00000580642 OR2T2Q6IF00 324 aa13.09□□□□□ -0.31
SS18-215ENST00000580642 ACBD4Q8NC06 268 aa13.09□□□□□ -0.31
SS18-215ENST00000580642 OR51A2Q8NGJ7 313 aa13.09□□□□□ -0.31
SS18-215ENST00000580642 LINC01560Q8TB33 94 aa13.09□□□□□ -0.31
SS18-215ENST00000580642 ORAI1Q96D31 301 aa13.09□□□□□ -0.31
SS18-215ENST00000580642 PLPPR2Q96GM1 343 aa13.09□□□□□ -0.31
SS18-215ENST00000580642 GFI1Q99684 422 aa13.09□□□□□ -0.31
SS18-215ENST00000580642 TMEM204Q9BSN7 226 aa13.09□□□□□ -0.31
SS18-215ENST00000580642 PAPOLGQ9BWT3 736 aaKnown RBP13.09□□□□□ -0.31
SS18-215ENST00000580642 OR51B6Q9H340 312 aa13.09□□□□□ -0.31
SS18-215ENST00000580642 PLGRKTQ9HBL7 147 aa13.09□□□□□ -0.31
SS18-215ENST00000580642 CA10Q9NS85 328 aa13.09□□□□□ -0.31
SS18-215ENST00000580642 TMEM100Q9NV29 134 aa13.09□□□□□ -0.31
SS18-215ENST00000580642 FBLN5Q9UBX5 448 aa13.09□□□□□ -0.31
SS18-215ENST00000580642 DAPK2Q9UIK4 370 aa13.09□□□□□ -0.31
SS18-215ENST00000580642 ADAM30Q9UKF2 790 aa13.09□□□□□ -0.31
SS18-215ENST00000580642 FAM208BQ5VWN6 2430 aa13.08□□□□□ -0.32
SS18-215ENST00000580642 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP13.08□□□□□ -0.32
SS18-215ENST00000580642 HCKP08631 526 aa13.08□□□□□ -0.32
SS18-215ENST00000580642 HTR2CP28335 458 aa13.08□□□□□ -0.32
SS18-215ENST00000580642 THBS2P35442 1172 aa13.08□□□□□ -0.32
SS18-215ENST00000580642 ATP1B3P54709 279 aa13.08□□□□□ -0.32
SS18-215ENST00000580642 PRDX4Q13162 271 aa13.08□□□□□ -0.32
SS18-215ENST00000580642 DAZAP2Q15038 168 aaPredicted RBP13.08□□□□□ -0.32
SS18-215ENST00000580642 KISS1Q15726 138 aa13.08□□□□□ -0.32
SS18-215ENST00000580642 RAB11BQ15907 218 aa13.08□□□□□ -0.32
SS18-215ENST00000580642 SPATA46Q5T0L3 261 aa13.08□□□□□ -0.32
SS18-215ENST00000580642 IDNKQ5T6J7 187 aa13.08□□□□□ -0.32
SS18-215ENST00000580642 PLCXD3Q63HM9 321 aa13.08□□□□□ -0.32
SS18-215ENST00000580642 DMRTC2Q8IXT2 367 aaPredicted RBP13.08□□□□□ -0.32
SS18-215ENST00000580642 ZSCAN4Q8NAM6 433 aaPredicted RBP13.08□□□□□ -0.32
SS18-215ENST00000580642 OR52N4Q8NGI2 321 aa13.08□□□□□ -0.32
SS18-215ENST00000580642 OR6Q1Q8NGQ2 317 aa13.08□□□□□ -0.32
SS18-215ENST00000580642 OR13G1Q8NGZ3 307 aa13.08□□□□□ -0.32
SS18-215ENST00000580642 OR5P3Q8WZ94 311 aa13.08□□□□□ -0.32
SS18-215ENST00000580642 PIGCQ92535 297 aa13.08□□□□□ -0.32
SS18-215ENST00000580642 MRPL24Q96A35 216 aaKnown RBP13.08□□□□□ -0.32
SS18-215ENST00000580642 PTX4Q96A99 478 aa13.08□□□□□ -0.32
SS18-215ENST00000580642 BORCS8Q96FH0 119 aa13.08□□□□□ -0.32
SS18-215ENST00000580642 WDFY2Q96P53 400 aa13.08□□□□□ -0.32
SS18-215ENST00000580642 TSC22D3Q99576 134 aa13.08□□□□□ -0.32
SS18-215ENST00000580642 MICU1Q9BPX6 476 aa13.08□□□□□ -0.32
SS18-215ENST00000580642 SMURF1Q9HCE7 757 aa13.08□□□□□ -0.32
SS18-215ENST00000580642 PCDHB16Q9NRJ7 776 aa13.08□□□□□ -0.32
SS18-215ENST00000580642 RABL2AQ9UBK7 228 aaPredicted RBP13.08□□□□□ -0.32
SS18-215ENST00000580642 SPATA2Q9UM82 520 aa13.08□□□□□ -0.32
SS18-215ENST00000580642 RABL2BQ9UNT1 228 aa13.08□□□□□ -0.32
SS18-215ENST00000580642 RNF115Q9Y4L5 304 aa13.08□□□□□ -0.32
SS18-215ENST00000580642 DIDO1Q9BTC0 2240 aaKnown RBP13.07□□□□□ -0.32
SS18-215ENST00000580642 A6NIN4 97 aa13.07□□□□□ -0.32
SS18-215ENST00000580642 TMEM210A6NLX4 147 aa13.07□□□□□ -0.32
SS18-215ENST00000580642 ZNF850A8MQ14 1090 aa13.07□□□□□ -0.32
SS18-215ENST00000580642 TIMM8AO60220 97 aaPredicted RBP13.07□□□□□ -0.32
SS18-215ENST00000580642 NCR1O76036 304 aa13.07□□□□□ -0.32
SS18-215ENST00000580642 TPPPO94811 219 aa13.07□□□□□ -0.32
SS18-215ENST00000580642 BPNT1O95861 308 aa13.07□□□□□ -0.32
SS18-215ENST00000580642 MPV17P39210 176 aa13.07□□□□□ -0.32
SS18-215ENST00000580642 FABP6P51161 128 aa13.07□□□□□ -0.32
SS18-215ENST00000580642 MTCP1P56278 107 aa13.07□□□□□ -0.32
SS18-215ENST00000580642 CAV3P56539 151 aa13.07□□□□□ -0.32
SS18-215ENST00000580642 ERVS71-1P61550 626 aa13.07□□□□□ -0.32
SS18-215ENST00000580642 GNG3P63215 75 aa13.07□□□□□ -0.32
SS18-215ENST00000580642 FAM76BQ5HYJ3 339 aa13.07□□□□□ -0.32
SS18-215ENST00000580642 ADAM5Q6NVV9 412 aa13.07□□□□□ -0.32
SS18-215ENST00000580642 MOB3CQ70IA8 216 aa13.07□□□□□ -0.32
SS18-215ENST00000580642 JAGN1Q8N5M9 183 aa13.07□□□□□ -0.32
SS18-215ENST00000580642 ZNF671Q8TAW3 534 aa13.07□□□□□ -0.32
SS18-215ENST00000580642 S100ZQ8WXG8 99 aa13.07□□□□□ -0.32
SS18-215ENST00000580642 ITPKCQ96DU7 683 aa13.07□□□□□ -0.32
SS18-215ENST00000580642 POM121Q96HA1 1249 aa13.07□□□□□ -0.32
SS18-215ENST00000580642 DIRC2Q96SL1 478 aa13.07□□□□□ -0.32
SS18-215ENST00000580642 SPOCK3Q9BQ16 436 aa13.07□□□□□ -0.32
SS18-215ENST00000580642 RTL8AQ9BWD3 113 aa13.07□□□□□ -0.32
SS18-215ENST00000580642 C6orf62Q9GZU0 229 aaPredicted RBP13.07□□□□□ -0.32
SS18-215ENST00000580642 LIN7BQ9HAP6 207 aa13.07□□□□□ -0.32
SS18-215ENST00000580642 RHOFQ9HBH0 211 aa13.07□□□□□ -0.32
SS18-215ENST00000580642 GPR173Q9NS66 373 aa13.07□□□□□ -0.32
SS18-215ENST00000580642 ATP23Q9Y6H3 246 aa13.07□□□□□ -0.32
SS18-215ENST00000580642 LOC100289279A0A1B0GTE1 492 aa13.06□□□□□ -0.32
SS18-215ENST00000580642 PQLC2LA1A4F0 135 aa13.06□□□□□ -0.32
SS18-215ENST00000580642 DEFB108AA8MXU0 73 aa13.06□□□□□ -0.32
SS18-215ENST00000580642 SHISA9B4DS77 424 aa13.06□□□□□ -0.32
SS18-215ENST00000580642 ZNF780AO75290 641 aaPredicted RBP13.06□□□□□ -0.32
SS18-215ENST00000580642 NAT2P11245 290 aa13.06□□□□□ -0.32
SS18-215ENST00000580642 BMXP51813 675 aa13.06□□□□□ -0.32
SS18-215ENST00000580642 GPR176Q14439 515 aa13.06□□□□□ -0.32
SS18-215ENST00000580642 EFNB3Q15768 340 aa13.06□□□□□ -0.32
SS18-215ENST00000580642 ASCL4Q6XD76 172 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms