RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 KCNE1BA0A087WTH5 132 aa2.51□□□□□ -2.01
SS18-214ENST00000580003 CCL15-CCL14A0A0B4J2E2 113 aa2.51□□□□□ -2.01
SS18-214ENST00000580003 E7EQL1 145 aa2.51□□□□□ -2.01
SS18-214ENST00000580003 ERI3O43414 337 aaKnown RBP2.51□□□□□ -2.01
SS18-214ENST00000580003 PTHP01270 115 aa2.51□□□□□ -2.01
SS18-214ENST00000580003 CCL15Q16663 113 aa2.51□□□□□ -2.01
SS18-214ENST00000580003 CPTPQ5TA50 214 aa2.51□□□□□ -2.01
SS18-214ENST00000580003 HHATQ5VTY9 493 aa2.51□□□□□ -2.01
SS18-214ENST00000580003 FAM104BQ5XKR9 115 aa2.51□□□□□ -2.01
SS18-214ENST00000580003 EIF3MQ7L2H7 374 aaKnown RBP2.51□□□□□ -2.01
SS18-214ENST00000580003 RAB43Q86YS6 212 aa2.51□□□□□ -2.01
SS18-214ENST00000580003 OR51F2Q8NH61 342 aa2.51□□□□□ -2.01
SS18-214ENST00000580003 SFXN5Q8TD22 340 aa2.51□□□□□ -2.01
SS18-214ENST00000580003 ASZ1Q8WWH4 475 aa2.51□□□□□ -2.01
SS18-214ENST00000580003 OR2V2Q96R30 315 aa2.51□□□□□ -2.01
SS18-214ENST00000580003 TREX1Q9NSU2 369 aa2.51□□□□□ -2.01
SS18-214ENST00000580003 NMRK1Q9NWW6 199 aa2.51□□□□□ -2.01
SS18-214ENST00000580003 D6RAR5 112 aa2.5□□□□□ -2.01
SS18-214ENST00000580003 CACNG3O60359 315 aa2.5□□□□□ -2.01
SS18-214ENST00000580003 PRSS3P35030 304 aa2.5□□□□□ -2.01
SS18-214ENST00000580003 OR1G1P47890 313 aa2.5□□□□□ -2.01
SS18-214ENST00000580003 OR1Q1Q15612 314 aa2.5□□□□□ -2.01
SS18-214ENST00000580003 OR2T5Q6IEZ7 315 aa2.5□□□□□ -2.01
SS18-214ENST00000580003 LRRC75AQ8NAA5 344 aa2.5□□□□□ -2.01
SS18-214ENST00000580003 OR4C13Q8NGP0 309 aa2.5□□□□□ -2.01
SS18-214ENST00000580003 OR2T29Q8NH02 315 aa2.5□□□□□ -2.01
SS18-214ENST00000580003 ZNF420Q8TAQ5 688 aaPredicted RBP2.5□□□□□ -2.01
SS18-214ENST00000580003 YIPF5Q969M3 257 aa2.5□□□□□ -2.01
SS18-214ENST00000580003 MS4A8Q9BY19 250 aa2.5□□□□□ -2.01
SS18-214ENST00000580003 TBL1XR1Q9BZK7 514 aa2.5□□□□□ -2.01
SS18-214ENST00000580003 ABCG5Q9H222 651 aa2.5□□□□□ -2.01
SS18-214ENST00000580003 PLXNB1O43157 2135 aa2.5□□□□□ -2.01
SS18-214ENST00000580003 LOC102724200A0A096LPH7 203 aaPredicted RBP2.49□□□□□ -2.01
SS18-214ENST00000580003 IGKV1-6A0A0C4DH72 117 aa2.49□□□□□ -2.01
SS18-214ENST00000580003 GOLGA8JA6NMD2 632 aa2.49□□□□□ -2.01
SS18-214ENST00000580003 C15orf65H3BRN8 121 aa2.49□□□□□ -2.01
SS18-214ENST00000580003 BCKDKO14874 412 aa2.49□□□□□ -2.01
SS18-214ENST00000580003 MYL12BO14950 172 aa2.49□□□□□ -2.01
SS18-214ENST00000580003 CCDC22O60826 627 aa2.49□□□□□ -2.01
SS18-214ENST00000580003 ERLIN1O75477 346 aa2.49□□□□□ -2.01
SS18-214ENST00000580003 IGKV1-39P01597 117 aa2.49□□□□□ -2.01
SS18-214ENST00000580003 IGKV1D-39P04432 117 aa2.49□□□□□ -2.01
SS18-214ENST00000580003 IFNW1P05000 195 aa2.49□□□□□ -2.01
SS18-214ENST00000580003 GOLGA8HP0CJ92 632 aa2.49□□□□□ -2.01
SS18-214ENST00000580003 NBL1P41271 181 aa2.49□□□□□ -2.01
SS18-214ENST00000580003 OR12D2P58182 307 aa2.49□□□□□ -2.01
SS18-214ENST00000580003 RCN1Q15293 331 aa2.49□□□□□ -2.01
SS18-214ENST00000580003 MAPRE2Q15555 327 aa2.49□□□□□ -2.01
SS18-214ENST00000580003 ZNF660Q6AZW8 331 aaPredicted RBP2.49□□□□□ -2.01
SS18-214ENST00000580003 WDR59Q6PJI9 974 aa2.49□□□□□ -2.01
SS18-214ENST00000580003 RNF10Q8N5U6 811 aaKnown RBP2.49□□□□□ -2.01
SS18-214ENST00000580003 LY6G5BQ8NDX9 201 aa2.49□□□□□ -2.01
SS18-214ENST00000580003 OR52E5Q8NH55 327 aa2.49□□□□□ -2.01
SS18-214ENST00000580003 OR1S1Q8NH92 325 aa2.49□□□□□ -2.01
SS18-214ENST00000580003 RCN3Q96D15 328 aa2.49□□□□□ -2.01
SS18-214ENST00000580003 HEBP1Q9NRV9 189 aa2.49□□□□□ -2.01
SS18-214ENST00000580003 MCUBQ9NWR8 336 aa2.49□□□□□ -2.01
SS18-214ENST00000580003 STX18Q9P2W9 335 aaKnown RBP2.49□□□□□ -2.01
SS18-214ENST00000580003 ZNF257Q9Y2Q1 563 aa2.49□□□□□ -2.01
SS18-214ENST00000580003 CACNA1DQ01668 2161 aa2.49□□□□□ -2.01
SS18-214ENST00000580003 MROH7Q68CQ1 1323 aa2.48□□□□□ -2.01
SS18-214ENST00000580003 SVILO95425 2214 aa2.48□□□□□ -2.01
SS18-214ENST00000580003 CTNSO60931 367 aa2.48□□□□□ -2.01
SS18-214ENST00000580003 FCN3O75636 299 aa2.48□□□□□ -2.01
SS18-214ENST00000580003 KCNK2O95069 426 aa2.48□□□□□ -2.01
SS18-214ENST00000580003 TDP2O95551 362 aa2.48□□□□□ -2.01
SS18-214ENST00000580003 IGHG2P01859 326 aa2.48□□□□□ -2.01
SS18-214ENST00000580003 IL3RAP26951 378 aa2.48□□□□□ -2.01
SS18-214ENST00000580003 SLC1A2P43004 574 aa2.48□□□□□ -2.01
SS18-214ENST00000580003 PSMD8P48556 350 aa2.48□□□□□ -2.01
SS18-214ENST00000580003 OR2B8PP59922 312 aa2.48□□□□□ -2.01
SS18-214ENST00000580003 RPS15AP62244 130 aaKnown RBP2.48□□□□□ -2.01
SS18-214ENST00000580003 ZNF33AQ06730 810 aa2.48□□□□□ -2.01
SS18-214ENST00000580003 SLC9A3R2Q15599 337 aa2.48□□□□□ -2.01
SS18-214ENST00000580003 ZNF141Q15928 474 aa2.48□□□□□ -2.01
SS18-214ENST00000580003 TMEM220Q6QAJ8 160 aa2.48□□□□□ -2.01
SS18-214ENST00000580003 PAGE2Q7Z2X7 111 aa2.48□□□□□ -2.01
SS18-214ENST00000580003 PDPNQ86YL7 162 aa2.48□□□□□ -2.01
SS18-214ENST00000580003 YIPF6Q96EC8 236 aa2.48□□□□□ -2.01
SS18-214ENST00000580003 MRPL48Q96GC5 212 aaKnown RBP2.48□□□□□ -2.01
SS18-214ENST00000580003 RDH12Q96NR8 316 aa2.48□□□□□ -2.01
SS18-214ENST00000580003 A0A075B6Q4 140 aa2.47□□□□□ -2.01
SS18-214ENST00000580003 IZUMO1RA6ND01 250 aa2.47□□□□□ -2.01
SS18-214ENST00000580003 KRT16P08779 473 aa2.47□□□□□ -2.01
SS18-214ENST00000580003 CXCR1P25024 350 aa2.47□□□□□ -2.01
SS18-214ENST00000580003 IDI1Q13907 227 aa2.47□□□□□ -2.01
SS18-214ENST00000580003 KDM4DQ6B0I6 523 aa2.47□□□□□ -2.01
SS18-214ENST00000580003 ZNF470Q6ECI4 717 aa2.47□□□□□ -2.01
SS18-214ENST00000580003 METAP1DQ6UB28 335 aaPredicted RBP2.47□□□□□ -2.01
SS18-214ENST00000580003 BZW1Q7L1Q6 419 aaKnown RBP2.47□□□□□ -2.01
SS18-214ENST00000580003 LRRC8AQ8IWT6 810 aa2.47□□□□□ -2.01
SS18-214ENST00000580003 SLC30A8Q8IWU4 369 aa2.47□□□□□ -2.01
SS18-214ENST00000580003 WDR31Q8NA23 367 aa2.47□□□□□ -2.01
SS18-214ENST00000580003 ACTL9Q8TC94 416 aa2.47□□□□□ -2.01
SS18-214ENST00000580003 TSEN15Q8WW01 171 aaKnown RBP2.47□□□□□ -2.01
SS18-214ENST00000580003 IGF2BP2-AS1Q96M15 143 aa2.47□□□□□ -2.01
SS18-214ENST00000580003 JSRP1Q96MG2 331 aaPredicted RBP2.47□□□□□ -2.01
SS18-214ENST00000580003 OR2S2Q9NQN1 319 aa2.47□□□□□ -2.01
SS18-214ENST00000580003 CA10Q9NS85 328 aa2.47□□□□□ -2.01
SS18-214ENST00000580003 CES1P1Q9UKY3 287 aa2.47□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 73.9 ms