RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 RHBDD3Q9Y3P4 386 aa17.29■□□□□ 0.36
VPS53-216ENST00000574029 BTBD17A6NE02 478 aa17.28■□□□□ 0.36
VPS53-216ENST00000574029 NPFFO15130 113 aa17.28■□□□□ 0.36
VPS53-216ENST00000574029 DNAJC8O75937 253 aaPredicted RBP17.28■□□□□ 0.36
VPS53-216ENST00000574029 CCNB2O95067 398 aa17.28■□□□□ 0.36
VPS53-216ENST00000574029 APOC1P02654 83 aa17.28■□□□□ 0.36
VPS53-216ENST00000574029 EEF1B2P24534 225 aaKnown RBP17.28■□□□□ 0.36
VPS53-216ENST00000574029 MAGEA2P43356 314 aa17.28■□□□□ 0.36
VPS53-216ENST00000574029 RASSF2P50749 326 aa17.28■□□□□ 0.36
VPS53-216ENST00000574029 IKZF1Q13422 519 aa17.28■□□□□ 0.36
VPS53-216ENST00000574029 LRRC10Q5BKY1 277 aa17.28■□□□□ 0.36
VPS53-216ENST00000574029 FAM57BQ71RH2 274 aa17.28■□□□□ 0.36
VPS53-216ENST00000574029 CSNK2A3Q8NEV1 391 aa17.28■□□□□ 0.36
VPS53-216ENST00000574029 OR2T33Q8NG76 320 aa17.28■□□□□ 0.36
VPS53-216ENST00000574029 TNFRSF14Q92956 283 aa17.28■□□□□ 0.36
VPS53-216ENST00000574029 ITPKCQ96DU7 683 aa17.28■□□□□ 0.36
VPS53-216ENST00000574029 ABHD6Q9BV23 337 aa17.28■□□□□ 0.36
VPS53-216ENST00000574029 DNTTIP1Q9H147 329 aa17.28■□□□□ 0.36
VPS53-216ENST00000574029 HAO2Q9NYQ3 351 aa17.28■□□□□ 0.36
VPS53-216ENST00000574029 PRKDCP78527 4128 aaKnown RBP17.28■□□□□ 0.36
VPS53-216ENST00000574029 NOTCH1P46531 2555 aa17.27■□□□□ 0.36
VPS53-216ENST00000574029 ZNF816-ZNF321PA0A0X1KG74 233 aa17.27■□□□□ 0.36
VPS53-216ENST00000574029 GSC2O15499 205 aa17.27■□□□□ 0.36
VPS53-216ENST00000574029 TGFBR2P37173 567 aa17.27■□□□□ 0.36
VPS53-216ENST00000574029 GNALP38405 381 aa17.27■□□□□ 0.36
VPS53-216ENST00000574029 ZNF121P58317 390 aaPredicted RBP17.27■□□□□ 0.36
VPS53-216ENST00000574029 IL5RAQ01344 420 aa17.27■□□□□ 0.36
VPS53-216ENST00000574029 PRB3Q04118 309 aaPredicted RBP17.27■□□□□ 0.36
VPS53-216ENST00000574029 SNCBQ16143 134 aa17.27■□□□□ 0.36
VPS53-216ENST00000574029 AQP11Q8NBQ7 271 aa17.27■□□□□ 0.36
VPS53-216ENST00000574029 OR5T2Q8NGG2 359 aa17.27■□□□□ 0.36
VPS53-216ENST00000574029 OR10Z1Q8NGY1 313 aa17.27■□□□□ 0.36
VPS53-216ENST00000574029 PAPOLGQ9BWT3 736 aaKnown RBP17.27■□□□□ 0.36
VPS53-216ENST00000574029 AQP12BA6NM10 295 aa17.26■□□□□ 0.35
VPS53-216ENST00000574029 IFNGP01579 166 aa17.26■□□□□ 0.35
VPS53-216ENST00000574029 SELLP14151 372 aa17.26■□□□□ 0.35
VPS53-216ENST00000574029 DLX1P56177 255 aa17.26■□□□□ 0.35
VPS53-216ENST00000574029 KLRD1Q13241 179 aa17.26■□□□□ 0.35
VPS53-216ENST00000574029 C1orf122Q6ZSJ8 110 aa17.26■□□□□ 0.35
VPS53-216ENST00000574029 AQP12AQ8IXF9 295 aa17.26■□□□□ 0.35
VPS53-216ENST00000574029 OR6N2Q8NGY6 317 aa17.26■□□□□ 0.35
VPS53-216ENST00000574029 CCDC124Q96CT7 223 aaKnown RBP17.26■□□□□ 0.35
VPS53-216ENST00000574029 LRGUKQ96M69 825 aa17.26■□□□□ 0.35
VPS53-216ENST00000574029 RAB3IPQ96QF0 476 aaPredicted RBP17.26■□□□□ 0.35
VPS53-216ENST00000574029 INTS14Q96SY0 518 aa17.26■□□□□ 0.35
VPS53-216ENST00000574029 AMELYQ99218 206 aa17.26■□□□□ 0.35
VPS53-216ENST00000574029 MICU1Q9BPX6 476 aa17.26■□□□□ 0.35
VPS53-216ENST00000574029 CADM1Q9BY67 442 aaKnown RBP17.26■□□□□ 0.35
VPS53-216ENST00000574029 WDR13Q9H1Z4 485 aa17.26■□□□□ 0.35
VPS53-216ENST00000574029 OR10A2Q9H208 303 aa17.26■□□□□ 0.35
VPS53-216ENST00000574029 RGCCQ9H4X1 137 aa17.26■□□□□ 0.35
VPS53-216ENST00000574029 ARMC1Q9NVT9 282 aa17.26■□□□□ 0.35
VPS53-216ENST00000574029 DNAJC27Q9NZQ0 273 aa17.26■□□□□ 0.35
VPS53-216ENST00000574029 MPC1Q9Y5U8 109 aa17.26■□□□□ 0.35
VPS53-216ENST00000574029 ANXA2P2A6NMY6 339 aa17.25■□□□□ 0.35
VPS53-216ENST00000574029 SOX14O95416 240 aa17.25■□□□□ 0.35
VPS53-216ENST00000574029 ZNF3P17036 446 aa17.25■□□□□ 0.35
VPS53-216ENST00000574029 OPRL1P41146 370 aa17.25■□□□□ 0.35
VPS53-216ENST00000574029 PPP1R8Q12972 351 aaKnown RBP17.25■□□□□ 0.35
VPS53-216ENST00000574029 C2orf68Q2NKX9 166 aa17.25■□□□□ 0.35
VPS53-216ENST00000574029 FAM98BQ52LJ0 330 aaKnown RBP17.25■□□□□ 0.35
VPS53-216ENST00000574029 ZNF788Q6ZQV5 615 aa17.25■□□□□ 0.35
VPS53-216ENST00000574029 ERI1Q8IV48 349 aaKnown RBP17.25■□□□□ 0.35
VPS53-216ENST00000574029 FTMTQ8N4E7 242 aa17.25■□□□□ 0.35
VPS53-216ENST00000574029 OR5R1Q8NH85 324 aa17.25■□□□□ 0.35
VPS53-216ENST00000574029 H1FXQ92522 213 aaKnown RBP17.25■□□□□ 0.35
VPS53-216ENST00000574029 RTL8AQ9BWD3 113 aa17.25■□□□□ 0.35
VPS53-216ENST00000574029 DGCR6LQ9BY27 220 aa17.25■□□□□ 0.35
VPS53-216ENST00000574029 CMC2Q9NRP2 79 aa17.25■□□□□ 0.35
VPS53-216ENST00000574029 DNAJB11Q9UBS4 358 aa17.25■□□□□ 0.35
VPS53-216ENST00000574029 A0A1W2PRD5 423 aa17.24■□□□□ 0.35
VPS53-216ENST00000574029 A0A1W2PRF3 423 aa17.24■□□□□ 0.35
VPS53-216ENST00000574029 A0A1W2PRM7 423 aa17.24■□□□□ 0.35
VPS53-216ENST00000574029 TMEM210A6NLX4 147 aa17.24■□□□□ 0.35
VPS53-216ENST00000574029 RIIAD1A6NNX1 92 aa17.24■□□□□ 0.35
VPS53-216ENST00000574029 HOXB6P17509 224 aaKnown RBP17.24■□□□□ 0.35
VPS53-216ENST00000574029 SAA4P35542 130 aa17.24■□□□□ 0.35
VPS53-216ENST00000574029 UBE2E1P51965 193 aa17.24■□□□□ 0.35
VPS53-216ENST00000574029 EGR3Q06889 387 aa17.24■□□□□ 0.35
VPS53-216ENST00000574029 DGUOKQ16854 277 aa17.24■□□□□ 0.35
VPS53-216ENST00000574029 GFOD2Q3B7J2 385 aa17.24■□□□□ 0.35
VPS53-216ENST00000574029 FAM76BQ5HYJ3 339 aa17.24■□□□□ 0.35
VPS53-216ENST00000574029 SLC35E4Q6ICL7 350 aa17.24■□□□□ 0.35
VPS53-216ENST00000574029 SHFQ7M4L6 423 aa17.24■□□□□ 0.35
VPS53-216ENST00000574029 C1QL4Q86Z23 238 aa17.24■□□□□ 0.35
VPS53-216ENST00000574029 PNKDQ8N490 385 aa17.24■□□□□ 0.35
VPS53-216ENST00000574029 ANGPTL6Q8NI99 470 aa17.24■□□□□ 0.35
VPS53-216ENST00000574029 FAM110DQ8TAY7 271 aaPredicted RBP17.24■□□□□ 0.35
VPS53-216ENST00000574029 OR5P3Q8WZ94 311 aa17.24■□□□□ 0.35
VPS53-216ENST00000574029 RPL3LQ92901 407 aaKnown RBP17.24■□□□□ 0.35
VPS53-216ENST00000574029 MED30Q96HR3 178 aa17.24■□□□□ 0.35
VPS53-216ENST00000574029 PGAM5Q96HS1 289 aa17.24■□□□□ 0.35
VPS53-216ENST00000574029 GAFA1Q96PS6 74 aa17.24■□□□□ 0.35
VPS53-216ENST00000574029 BRD7Q9NPI1 651 aa17.24■□□□□ 0.35
VPS53-216ENST00000574029 SNTG1Q9NSN8 517 aa17.24■□□□□ 0.35
VPS53-216ENST00000574029 VNN3Q9NY84 501 aa17.24■□□□□ 0.35
VPS53-216ENST00000574029 FBLN5Q9UBX5 448 aa17.24■□□□□ 0.35
VPS53-216ENST00000574029 POMPQ9Y244 141 aa17.24■□□□□ 0.35
VPS53-216ENST00000574029 MEIOCA2RUB1 952 aa17.23■□□□□ 0.35
VPS53-216ENST00000574029 NKX6-3A6NJ46 265 aa17.23■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 220 ms