RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 PGAM2P15259 253 aa19.99■□□□□ 0.79
VPS53-211ENST00000571805 FPR2P25090 351 aa19.99■□□□□ 0.79
VPS53-211ENST00000571805 IL11RAQ14626 422 aa19.99■□□□□ 0.79
VPS53-211ENST00000571805 ATRAIDQ6UW56 229 aa19.99■□□□□ 0.79
VPS53-211ENST00000571805 ST6GALNAC5Q9BVH7 336 aa19.99■□□□□ 0.79
VPS53-211ENST00000571805 ZNF700Q9H0M5 742 aa19.99■□□□□ 0.79
VPS53-211ENST00000571805 MYO7BQ6PIF6 2116 aa19.99■□□□□ 0.79
VPS53-211ENST00000571805 A0A0B4J2A0 478 aa19.99■□□□□ 0.79
VPS53-211ENST00000571805 TEX13DA0A0J9YY54 714 aaPredicted RBP19.99■□□□□ 0.79
VPS53-211ENST00000571805 F8VVB4 439 aa19.99■□□□□ 0.79
VPS53-211ENST00000571805 F8VWA3 439 aa19.99■□□□□ 0.79
VPS53-211ENST00000571805 H0YIZ8 118 aa19.99■□□□□ 0.79
VPS53-211ENST00000571805 STMND1H3BQB6 276 aa19.99■□□□□ 0.79
VPS53-211ENST00000571805 DHRS3O75911 302 aa19.99■□□□□ 0.79
VPS53-211ENST00000571805 COX6A1P12074 109 aa19.99■□□□□ 0.79
VPS53-211ENST00000571805 LIFP15018 202 aa19.99■□□□□ 0.79
VPS53-211ENST00000571805 PI3P19957 117 aa19.99■□□□□ 0.79
VPS53-211ENST00000571805 AMY2BP19961 511 aa19.99■□□□□ 0.79
VPS53-211ENST00000571805 OTX1P32242 354 aaPredicted RBP19.99■□□□□ 0.79
VPS53-211ENST00000571805 CYCSP99999 105 aaKnown RBP19.99■□□□□ 0.79
VPS53-211ENST00000571805 UNQ6126/PRO20091Q6UXV3 157 aa19.99■□□□□ 0.79
VPS53-211ENST00000571805 NAT6Q93015 286 aa19.99■□□□□ 0.79
VPS53-211ENST00000571805 PIK3IP1Q96FE7 263 aa19.99■□□□□ 0.79
VPS53-211ENST00000571805 SHPKQ9UHJ6 478 aa19.99■□□□□ 0.79
VPS53-211ENST00000571805 OSGIN2Q9Y236 505 aa19.99■□□□□ 0.79
VPS53-211ENST00000571805 SIT1Q9Y3P8 196 aa19.99■□□□□ 0.79
VPS53-211ENST00000571805 FLVCR1Q9Y5Y0 555 aa19.99■□□□□ 0.79
VPS53-211ENST00000571805 CDK2AP1O14519 115 aa19.98■□□□□ 0.79
VPS53-211ENST00000571805 EIF1BO60739 113 aaKnown RBP19.98■□□□□ 0.79
VPS53-211ENST00000571805 APOC3P02656 99 aa19.98■□□□□ 0.79
VPS53-211ENST00000571805 ATF4P18848 351 aaPredicted RBP19.98■□□□□ 0.79
VPS53-211ENST00000571805 SLC6A9P48067 706 aa19.98■□□□□ 0.79
VPS53-211ENST00000571805 SLC9A3R2Q15599 337 aa19.98■□□□□ 0.79
VPS53-211ENST00000571805 LRRC18Q8N456 261 aa19.98■□□□□ 0.79
VPS53-211ENST00000571805 RAB18Q9NP72 206 aa19.98■□□□□ 0.79
VPS53-211ENST00000571805 VAMP5O95183 116 aa19.98■□□□□ 0.79
VPS53-211ENST00000571805 FAHP16930 419 aa19.98■□□□□ 0.79
VPS53-211ENST00000571805 DSCR4P56555 118 aaPredicted RBP19.98■□□□□ 0.79
VPS53-211ENST00000571805 SLC16A14Q7RTX9 510 aa19.98■□□□□ 0.79
VPS53-211ENST00000571805 OR9K2Q8NGE7 335 aa19.98■□□□□ 0.79
VPS53-211ENST00000571805 STOML3Q8TAV4 291 aa19.98■□□□□ 0.79
VPS53-211ENST00000571805 IFI44Q8TCB0 444 aa19.98■□□□□ 0.79
VPS53-211ENST00000571805 ROBO4Q8WZ75 1007 aa19.98■□□□□ 0.79
VPS53-211ENST00000571805 DCUN1D4Q92564 292 aa19.98■□□□□ 0.79
VPS53-211ENST00000571805 HLA-CQ95604 372 aa19.98■□□□□ 0.79
VPS53-211ENST00000571805 RRNAD1Q96FB5 475 aaKnown RBP19.98■□□□□ 0.79
VPS53-211ENST00000571805 PECRQ9BY49 303 aa19.98■□□□□ 0.79
VPS53-211ENST00000571805 SH2D2AQ9NP31 389 aa19.98■□□□□ 0.79
VPS53-211ENST00000571805 PRR13Q9NZ81 148 aa19.98■□□□□ 0.79
VPS53-211ENST00000571805 PILRBQ9UKJ0 227 aa19.98■□□□□ 0.79
VPS53-211ENST00000571805 TNRC6BQ9UPQ9 1833 aaKnown RBP19.97■□□□□ 0.79
VPS53-211ENST00000571805 DHHO43323 396 aa19.97■□□□□ 0.79
VPS53-211ENST00000571805 ADAP1O75689 374 aa19.97■□□□□ 0.79
VPS53-211ENST00000571805 KLF7O75840 302 aaPredicted RBP19.97■□□□□ 0.79
VPS53-211ENST00000571805 BLVRBP30043 206 aaPredicted RBP19.97■□□□□ 0.79
VPS53-211ENST00000571805 SNU13P55769 128 aaKnown RBP19.97■□□□□ 0.79
VPS53-211ENST00000571805 ZIC4Q8N9L1 334 aa19.97■□□□□ 0.79
VPS53-211ENST00000571805 PP6455Q8WZ26 134 aa19.97■□□□□ 0.79
VPS53-211ENST00000571805 SCGB3A2Q96PL1 93 aa19.97■□□□□ 0.79
VPS53-211ENST00000571805 TM2D1Q9BX74 207 aa19.97■□□□□ 0.79
VPS53-211ENST00000571805 FOXD3Q9UJU5 478 aaPredicted RBP19.97■□□□□ 0.79
VPS53-211ENST00000571805 NPIPA2E9PIF3 369 aa19.97■□□□□ 0.79
VPS53-211ENST00000571805 NPIPA3F8WFD2 350 aa19.97■□□□□ 0.79
VPS53-211ENST00000571805 SDCBPO00560 298 aaPredicted RBP19.97■□□□□ 0.79
VPS53-211ENST00000571805 SIGLEC5O15389 551 aa19.97■□□□□ 0.79
VPS53-211ENST00000571805 HPNP05981 417 aa19.97■□□□□ 0.79
VPS53-211ENST00000571805 SIGLEC14Q08ET2 396 aa19.97■□□□□ 0.79
VPS53-211ENST00000571805 ANKRD55Q3KP44 614 aa19.97■□□□□ 0.79
VPS53-211ENST00000571805 RAET1LQ5VY80 246 aa19.97■□□□□ 0.79
VPS53-211ENST00000571805 BPIFCQ8NFQ6 507 aa19.97■□□□□ 0.79
VPS53-211ENST00000571805 PAQR8Q8TEZ7 354 aa19.97■□□□□ 0.79
VPS53-211ENST00000571805 RBM24Q9BX46 236 aaKnown RBP19.97■□□□□ 0.79
VPS53-211ENST00000571805 CHST5Q9GZS9 411 aa19.97■□□□□ 0.79
VPS53-211ENST00000571805 PTRH2Q9Y3E5 179 aaKnown RBP19.97■□□□□ 0.79
VPS53-211ENST00000571805 G3V3Y1 287 aa19.96■□□□□ 0.79
VPS53-211ENST00000571805 FCGR2AP12318 317 aa19.96■□□□□ 0.79
VPS53-211ENST00000571805 OR3A2P47893 321 aa19.96■□□□□ 0.79
VPS53-211ENST00000571805 CSNK2A1P68400 391 aaPredicted RBP19.96■□□□□ 0.79
VPS53-211ENST00000571805 EXT1Q16394 746 aa19.96■□□□□ 0.79
VPS53-211ENST00000571805 Q7L0L9 218 aa19.96■□□□□ 0.79
VPS53-211ENST00000571805 TMEM17Q86X19 198 aa19.96■□□□□ 0.79
VPS53-211ENST00000571805 ZSCAN4Q8NAM6 433 aaPredicted RBP19.96■□□□□ 0.79
VPS53-211ENST00000571805 CSNK2A3Q8NEV1 391 aa19.96■□□□□ 0.79
VPS53-211ENST00000571805 MAFIPQ8WZ33 124 aa19.96■□□□□ 0.79
VPS53-211ENST00000571805 CDC6Q99741 560 aa19.96■□□□□ 0.79
VPS53-211ENST00000571805 CYTL1Q9NRR1 136 aa19.96■□□□□ 0.79
VPS53-211ENST00000571805 HS3ST3B1Q9Y662 390 aa19.96■□□□□ 0.79
VPS53-211ENST00000571805 MPTX1A8MV57 137 aa19.95■□□□□ 0.78
VPS53-211ENST00000571805 FGF16O43320 207 aa19.95■□□□□ 0.78
VPS53-211ENST00000571805 DBHP09172 617 aa19.95■□□□□ 0.78
VPS53-211ENST00000571805 RPS2P15880 293 aaKnown RBP19.95■□□□□ 0.78
VPS53-211ENST00000571805 SERPINA2P20848 420 aa19.95■□□□□ 0.78
VPS53-211ENST00000571805 SUCLG1P53597 346 aaKnown RBP19.95■□□□□ 0.78
VPS53-211ENST00000571805 RSPO4Q2I0M5 234 aaPredicted RBP19.95■□□□□ 0.78
VPS53-211ENST00000571805 OR52H1Q8NGJ2 320 aa19.95■□□□□ 0.78
VPS53-211ENST00000571805 HAS2Q92819 552 aa19.95■□□□□ 0.78
VPS53-211ENST00000571805 PIGLQ9Y2B2 252 aa19.95■□□□□ 0.78
VPS53-211ENST00000571805 LYL1P12980 280 aa19.95■□□□□ 0.78
VPS53-211ENST00000571805 GLRA1P23415 457 aa19.95■□□□□ 0.78
VPS53-211ENST00000571805 TAS2R46P59540 309 aa19.95■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms