RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 OR8U9P0C7N5 309 aa12.83□□□□□ -0.36
VPS35-210ENST00000568784 TAF9Q16594 264 aa12.83□□□□□ -0.36
VPS35-210ENST00000568784 OGFOD3Q6PK18 319 aa12.83□□□□□ -0.36
VPS35-210ENST00000568784 CPEB2Q7Z5Q1 589 aaKnown RBP12.83□□□□□ -0.36
VPS35-210ENST00000568784 OR1N1Q8NGS0 311 aa12.83□□□□□ -0.36
VPS35-210ENST00000568784 OR8U1Q8NH10 309 aa12.83□□□□□ -0.36
VPS35-210ENST00000568784 ARPC4-TTLL3A0A0A6YYG9 625 aa12.83□□□□□ -0.36
VPS35-210ENST00000568784 CLDN17P56750 224 aa12.83□□□□□ -0.36
VPS35-210ENST00000568784 MYBPHQ13203 477 aa12.83□□□□□ -0.36
VPS35-210ENST00000568784 CLINT1Q14677 625 aa12.83□□□□□ -0.36
VPS35-210ENST00000568784 DTWD2Q8NBA8 298 aa12.83□□□□□ -0.36
VPS35-210ENST00000568784 RNF133Q8WVZ7 376 aa12.83□□□□□ -0.36
VPS35-210ENST00000568784 MRGPRFQ96AM1 343 aa12.83□□□□□ -0.36
VPS35-210ENST00000568784 EDEM2Q9BV94 578 aa12.83□□□□□ -0.36
VPS35-210ENST00000568784 SMCO4Q9NRQ5 59 aa12.83□□□□□ -0.36
VPS35-210ENST00000568784 MMP17Q9ULZ9 603 aa12.83□□□□□ -0.36
VPS35-210ENST00000568784 PCDHGA1Q9Y5H4 931 aa12.83□□□□□ -0.36
VPS35-210ENST00000568784 HOXA1P49639 335 aaPredicted RBP12.82□□□□□ -0.36
VPS35-210ENST00000568784 RRADP55042 308 aa12.82□□□□□ -0.36
VPS35-210ENST00000568784 RNF4P78317 190 aa12.82□□□□□ -0.36
VPS35-210ENST00000568784 HSD11B2P80365 405 aa12.82□□□□□ -0.36
VPS35-210ENST00000568784 KIRREL1Q96J84 757 aa12.82□□□□□ -0.36
VPS35-210ENST00000568784 PLEK2Q9NYT0 353 aa12.82□□□□□ -0.36
VPS35-210ENST00000568784 hCG_1809904A0A1W2PP81 198 aa12.82□□□□□ -0.36
VPS35-210ENST00000568784 A0A1W2PPC4 97 aa12.82□□□□□ -0.36
VPS35-210ENST00000568784 A0A1W2PR64 198 aa12.82□□□□□ -0.36
VPS35-210ENST00000568784 A0A1W2PRV1 198 aa12.82□□□□□ -0.36
VPS35-210ENST00000568784 A6NLC8 198 aa12.82□□□□□ -0.36
VPS35-210ENST00000568784 ADAM10O14672 748 aa12.82□□□□□ -0.36
VPS35-210ENST00000568784 SCGNO76038 276 aa12.82□□□□□ -0.36
VPS35-210ENST00000568784 NQO2P16083 231 aa12.82□□□□□ -0.36
VPS35-210ENST00000568784 IGFBP4P22692 258 aa12.82□□□□□ -0.36
VPS35-210ENST00000568784 CAV2P51636 162 aa12.82□□□□□ -0.36
VPS35-210ENST00000568784 C17orf67Q0P5P2 114 aa12.82□□□□□ -0.36
VPS35-210ENST00000568784 HOGA1Q86XE5 327 aa12.82□□□□□ -0.36
VPS35-210ENST00000568784 STT3BQ8TCJ2 826 aa12.82□□□□□ -0.36
VPS35-210ENST00000568784 ZNF44P15621 663 aa12.82□□□□□ -0.36
VPS35-210ENST00000568784 MMP16P51512 607 aa12.82□□□□□ -0.36
VPS35-210ENST00000568784 EIF2S3LQ2VIR3 472 aaKnown RBP12.82□□□□□ -0.36
VPS35-210ENST00000568784 SPIN3Q5JUX0 258 aa12.82□□□□□ -0.36
VPS35-210ENST00000568784 PHF19Q5T6S3 580 aa12.82□□□□□ -0.36
VPS35-210ENST00000568784 OR5L1Q8NGL2 311 aa12.82□□□□□ -0.36
VPS35-210ENST00000568784 OR13G1Q8NGZ3 307 aa12.82□□□□□ -0.36
VPS35-210ENST00000568784 FAM213BQ8TBF2 198 aa12.82□□□□□ -0.36
VPS35-210ENST00000568784 GLYATL2Q8WU03 294 aa12.82□□□□□ -0.36
VPS35-210ENST00000568784 PARPBPQ9NWS1 579 aa12.82□□□□□ -0.36
VPS35-210ENST00000568784 PCDH15Q96QU1 1955 aa12.81□□□□□ -0.36
VPS35-210ENST00000568784 TSPAN2O60636 221 aa12.81□□□□□ -0.36
VPS35-210ENST00000568784 FHITP49789 147 aa12.81□□□□□ -0.36
VPS35-210ENST00000568784 MIDNQ504T8 468 aa12.81□□□□□ -0.36
VPS35-210ENST00000568784 URGCP-MRPS24S4R325 110 aa12.81□□□□□ -0.36
VPS35-210ENST00000568784 TLX3O43711 291 aaPredicted RBP12.81□□□□□ -0.36
VPS35-210ENST00000568784 IGKV3-11P04433 115 aa12.81□□□□□ -0.36
VPS35-210ENST00000568784 JMJD7P0C870 316 aa12.81□□□□□ -0.36
VPS35-210ENST00000568784 P4HA3Q7Z4N8 544 aa12.81□□□□□ -0.36
VPS35-210ENST00000568784 C1QL2Q7Z5L3 287 aa12.81□□□□□ -0.36
VPS35-210ENST00000568784 FAM24BQ8N5W8 94 aa12.81□□□□□ -0.36
VPS35-210ENST00000568784 BCL2L14Q9BZR8 327 aa12.81□□□□□ -0.36
VPS35-210ENST00000568784 GPR173Q9NS66 373 aa12.81□□□□□ -0.36
VPS35-210ENST00000568784 FAM206AQ9NX38 181 aa12.81□□□□□ -0.36
VPS35-210ENST00000568784 GPR132Q9UNW8 380 aa12.81□□□□□ -0.36
VPS35-210ENST00000568784 KCNIP3Q9Y2W7 256 aa12.81□□□□□ -0.36
VPS35-210ENST00000568784 TMEM33P57088 247 aa12.81□□□□□ -0.36
VPS35-210ENST00000568784 SLC25A24Q6NUK1 477 aa12.81□□□□□ -0.36
VPS35-210ENST00000568784 OR9K2Q8NGE7 335 aa12.81□□□□□ -0.36
VPS35-210ENST00000568784 NEK7Q8TDX7 302 aa12.81□□□□□ -0.36
VPS35-210ENST00000568784 DYRK2Q92630 601 aa12.81□□□□□ -0.36
VPS35-210ENST00000568784 LAMA1P25391 3075 aa12.81□□□□□ -0.36
VPS35-210ENST00000568784 SHANK1Q9Y566 2161 aa12.81□□□□□ -0.36
VPS35-210ENST00000568784 EYSQ5T1H1 3165 aa12.8□□□□□ -0.36
VPS35-210ENST00000568784 A0A0A6YYD4 124 aa12.8□□□□□ -0.36
VPS35-210ENST00000568784 EIF3GO75821 320 aaKnown RBP eCLIP12.8□□□□□ -0.36
VPS35-210ENST00000568784 IFNA2P01563 188 aa12.8□□□□□ -0.36
VPS35-210ENST00000568784 TMEM50BP56557 158 aa12.8□□□□□ -0.36
VPS35-210ENST00000568784 ACY1Q03154 408 aa12.8□□□□□ -0.36
VPS35-210ENST00000568784 KISS1Q15726 138 aa12.8□□□□□ -0.36
VPS35-210ENST00000568784 PCK2Q16822 640 aa12.8□□□□□ -0.36
VPS35-210ENST00000568784 FBXO46Q6PJ61 603 aaPredicted RBP12.8□□□□□ -0.36
VPS35-210ENST00000568784 ARRDC1Q8N5I2 433 aa12.8□□□□□ -0.36
VPS35-210ENST00000568784 TCEAL3Q969E4 200 aa12.8□□□□□ -0.36
VPS35-210ENST00000568784 SEC11CQ9BY50 192 aa12.8□□□□□ -0.36
VPS35-210ENST00000568784 NMES1Q9C002 83 aa12.8□□□□□ -0.36
VPS35-210ENST00000568784 KCNJ16Q9NPI9 418 aa12.8□□□□□ -0.36
VPS35-210ENST00000568784 C1orf123Q9NWV4 160 aa12.8□□□□□ -0.36
VPS35-210ENST00000568784 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa12.8□□□□□ -0.36
VPS35-210ENST00000568784 A0A1W2PPH5 198 aa12.8□□□□□ -0.36
VPS35-210ENST00000568784 SPRY1O43609 319 aaPredicted RBP12.8□□□□□ -0.36
VPS35-210ENST00000568784 IL2RAP01589 272 aa12.8□□□□□ -0.36
VPS35-210ENST00000568784 RGS19P49795 217 aa12.8□□□□□ -0.36
VPS35-210ENST00000568784 FABP9Q0Z7S8 132 aa12.8□□□□□ -0.36
VPS35-210ENST00000568784 SLC30A7Q8NEW0 376 aa12.8□□□□□ -0.36
VPS35-210ENST00000568784 MRPL24Q96A35 216 aaKnown RBP12.8□□□□□ -0.36
VPS35-210ENST00000568784 TMEM230Q96A57 120 aa12.8□□□□□ -0.36
VPS35-210ENST00000568784 RAB18Q9NP72 206 aa12.8□□□□□ -0.36
VPS35-210ENST00000568784 ZNF319Q9P2F9 582 aa12.8□□□□□ -0.36
VPS35-210ENST00000568784 PIGLQ9Y2B2 252 aa12.8□□□□□ -0.36
VPS35-210ENST00000568784 NDUFA2O43678 99 aa12.8□□□□□ -0.36
VPS35-210ENST00000568784 MTCP1P56278 107 aa12.8□□□□□ -0.36
VPS35-210ENST00000568784 RSU1Q15404 277 aa12.8□□□□□ -0.36
VPS35-210ENST00000568784 ZNF565Q8N9K5 539 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms