RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 ZNF626Q68DY1 528 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 CD200R1LQ6Q8B3 271 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 TMEM207Q6UWW9 146 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 Q6YL49 198 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 ZNF782Q6ZMW2 699 aaPredicted RBP2.43□□□□□ -2.02
VPS35-209ENST00000568642 ZNF66Q6ZN08 573 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 PHF13Q86YI8 300 aaPredicted RBP2.43□□□□□ -2.02
VPS35-209ENST00000568642 KIRREL3Q8IZU9 778 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 TCEANCQ8N8B7 351 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 PNLDC1Q8NA58 520 aaKnown RBP2.43□□□□□ -2.02
VPS35-209ENST00000568642 ZSCAN4Q8NAM6 433 aaPredicted RBP2.43□□□□□ -2.02
VPS35-209ENST00000568642 ZNF740Q8NDX6 193 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 OR2T33Q8NG76 320 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 OR5B3Q8NH48 314 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 OR5AK3PQ8NH89 298 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 MAPK15Q8TD08 544 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 TBCKQ8TEA7 893 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 C11orf52Q96A22 123 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 ELSPBP1Q96BH3 223 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 ANKRD9Q96BM1 317 aaPredicted RBP2.43□□□□□ -2.02
VPS35-209ENST00000568642 TLCD1Q96CP7 247 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 CXorf40BQ96DE9 158 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 SLC25A38Q96DW6 304 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 CMTM7Q96FZ5 175 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 MS4A14Q96JA4 679 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 OR10C1Q96KK4 312 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 SORT1Q99523 831 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 CGREF1Q99674 301 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 GPR22Q99680 433 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 GABRG3Q99928 467 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 NIPSNAP1Q9BPW8 284 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 ARMC7Q9H6L4 198 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 METTL17Q9H7H0 456 aaPredicted RBP2.43□□□□□ -2.02
VPS35-209ENST00000568642 NHEJ1Q9H9Q4 299 aaPredicted RBP2.43□□□□□ -2.02
VPS35-209ENST00000568642 ADGRL4Q9HBW9 690 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 TMBIM4Q9HC24 238 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 FZD3Q9NPG1 666 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 DIABLOQ9NR28 239 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 TEX10Q9NXF1 929 aaPredicted RBP2.43□□□□□ -2.02
VPS35-209ENST00000568642 CCDC59Q9P031 241 aaKnown RBP2.43□□□□□ -2.02
VPS35-209ENST00000568642 UVRAGQ9P2Y5 699 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 MLXQ9UH92 298 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 ZNF107Q9UII5 783 aaPredicted RBP2.43□□□□□ -2.02
VPS35-209ENST00000568642 RIMS3Q9UJD0 308 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 PPP1R3CQ9UQK1 317 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 PRG3Q9Y2Y8 225 aaPredicted RBP2.43□□□□□ -2.02
VPS35-209ENST00000568642 SLC22A7Q9Y694 548 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 TNRC6AQ8NDV7 1962 aaKnown RBP2.43□□□□□ -2.02
VPS35-209ENST00000568642 DOCK5Q9H7D0 1870 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 LOC100131303A0A0U1RQF7 123 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 GNG14A0A1W2PPG7 69 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 USP27XA6NNY8 438 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 NCBP2LA6PVI3 153 aaKnown RBP2.42□□□□□ -2.02
VPS35-209ENST00000568642 NPIPB9F8W1W9 429 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 CCRL2O00421 344 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 FCN1O00602 326 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 KLRC4O43908 158 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 HPGDSO60760 199 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 UGT2B17O75795 530 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 CLIC3O95833 236 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 TBX6O95947 436 aaPredicted RBP2.42□□□□□ -2.02
VPS35-209ENST00000568642 SERPINA1P01009 418 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 IGKV1D-16P01601 117 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 FGF1P05230 155 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 HPNP05981 417 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 CD5P06127 495 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 GUSBP08236 651 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 ZNF286BP0CG31 522 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 COX6B1P14854 86 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 IDO1P14902 403 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 PVRP15151 417 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 KCNE1P15382 129 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 PAX1P15863 534 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 C4BPBP20851 252 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 HTR1FP30939 366 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 FGF9P31371 208 aaPredicted RBP2.42□□□□□ -2.02
VPS35-209ENST00000568642 FOXN2P32314 431 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 PCK1P35558 622 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 PTH2RP49190 550 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 P2RY4P51582 365 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 CAV2P51636 162 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 RIDAP52758 137 aaKnown RBP2.42□□□□□ -2.02
VPS35-209ENST00000568642 HCCSP53701 268 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 TAS2R31P59538 309 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 PFN3P60673 137 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 PAFAH1B2P68402 229 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 FAM3AP98173 230 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 SLC25A11Q02978 314 aaKnown RBP2.42□□□□□ -2.02
VPS35-209ENST00000568642 PRKCDQ05655 676 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 TNFRSF9Q07011 255 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 SKP2Q13309 424 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 FAM53BQ14153 422 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 ICAM4Q14773 271 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 ARL6IP1Q15041 203 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 SLC9A3R2Q15599 337 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 CALCRLQ16602 461 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 CCNJQ5T5M9 372 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 ATP1A1-AS1Q5TC04 95 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 KRTAP5-1Q6L8H4 278 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 DHRS4L2Q6PKH6 230 aa2.42□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms