RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 SIRT7Q9NRC8 400 aa12.27□□□□□ -0.45
CLN3-236ENST00000568558 DNAJC27Q9NZQ0 273 aa12.27□□□□□ -0.45
CLN3-236ENST00000568558 ZNF319Q9P2F9 582 aa12.27□□□□□ -0.45
CLN3-236ENST00000568558 POMPQ9Y244 141 aa12.27□□□□□ -0.45
CLN3-236ENST00000568558 CAB39Q9Y376 341 aaPredicted RBP12.27□□□□□ -0.45
CLN3-236ENST00000568558 FAM96BQ9Y3D0 163 aa12.27□□□□□ -0.45
CLN3-236ENST00000568558 U3KQV3 271 aa12.27□□□□□ -0.45
CLN3-236ENST00000568558 AQP12BA6NM10 295 aa12.26□□□□□ -0.45
CLN3-236ENST00000568558 RNASEK-C17orf49H0YIS7 233 aa12.26□□□□□ -0.45
CLN3-236ENST00000568558 CDIPTO14735 213 aa12.26□□□□□ -0.45
CLN3-236ENST00000568558 NDUFB3O43676 98 aa12.26□□□□□ -0.45
CLN3-236ENST00000568558 APOC1P02654 83 aa12.26□□□□□ -0.45
CLN3-236ENST00000568558 FBP1P09467 338 aa12.26□□□□□ -0.45
CLN3-236ENST00000568558 RAP2AP10114 183 aa12.26□□□□□ -0.45
CLN3-236ENST00000568558 ZNF3P17036 446 aa12.26□□□□□ -0.45
CLN3-236ENST00000568558 CFL1P23528 166 aaKnown RBP12.26□□□□□ -0.45
CLN3-236ENST00000568558 TGM4P49221 684 aa12.26□□□□□ -0.45
CLN3-236ENST00000568558 ZNF121P58317 390 aaPredicted RBP12.26□□□□□ -0.45
CLN3-236ENST00000568558 FLOT2Q14254 428 aa12.26□□□□□ -0.45
CLN3-236ENST00000568558 GFOD2Q3B7J2 385 aa12.26□□□□□ -0.45
CLN3-236ENST00000568558 ATPAF1Q5TC12 328 aaPredicted RBP12.26□□□□□ -0.45
CLN3-236ENST00000568558 STUMQ69YW2 141 aa12.26□□□□□ -0.45
CLN3-236ENST00000568558 ERI1Q8IV48 349 aaKnown RBP12.26□□□□□ -0.45
CLN3-236ENST00000568558 AQP12AQ8IXF9 295 aa12.26□□□□□ -0.45
CLN3-236ENST00000568558 CMTM4Q8IZR5 234 aa12.26□□□□□ -0.45
CLN3-236ENST00000568558 GALNT4Q8N4A0 578 aa12.26□□□□□ -0.45
CLN3-236ENST00000568558 Q8N7P7 452 aa12.26□□□□□ -0.45
CLN3-236ENST00000568558 CSNK2A3Q8NEV1 391 aa12.26□□□□□ -0.45
CLN3-236ENST00000568558 C8orf46Q8TAG6 207 aa12.26□□□□□ -0.45
CLN3-236ENST00000568558 UBE2FQ969M7 185 aa12.26□□□□□ -0.45
CLN3-236ENST00000568558 INTS14Q96SY0 518 aa12.26□□□□□ -0.45
CLN3-236ENST00000568558 AMELYQ99218 206 aa12.26□□□□□ -0.45
CLN3-236ENST00000568558 MICU1Q9BPX6 476 aa12.26□□□□□ -0.45
CLN3-236ENST00000568558 DCTN5Q9BTE1 182 aa12.26□□□□□ -0.45
CLN3-236ENST00000568558 PAPOLGQ9BWT3 736 aaKnown RBP12.26□□□□□ -0.45
CLN3-236ENST00000568558 C16orf95Q9H693 158 aa12.26□□□□□ -0.45
CLN3-236ENST00000568558 TCF7L1Q9HCS4 588 aa12.26□□□□□ -0.45
CLN3-236ENST00000568558 CMC2Q9NRP2 79 aa12.26□□□□□ -0.45
CLN3-236ENST00000568558 RHBDD3Q9Y3P4 386 aa12.26□□□□□ -0.45
CLN3-236ENST00000568558 SLC22A31A6NKX4 558 aa12.25□□□□□ -0.45
CLN3-236ENST00000568558 FAM183AA6NL82 134 aa12.25□□□□□ -0.45
CLN3-236ENST00000568558 RIIAD1A6NNX1 92 aa12.25□□□□□ -0.45
CLN3-236ENST00000568558 SELLP14151 372 aa12.25□□□□□ -0.45
CLN3-236ENST00000568558 GNALP38405 381 aa12.25□□□□□ -0.45
CLN3-236ENST00000568558 OPRL1P41146 370 aa12.25□□□□□ -0.45
CLN3-236ENST00000568558 GUCA2AQ02747 115 aa12.25□□□□□ -0.45
CLN3-236ENST00000568558 PRB3Q04118 309 aaPredicted RBP12.25□□□□□ -0.45
CLN3-236ENST00000568558 IKZF1Q13422 519 aa12.25□□□□□ -0.45
CLN3-236ENST00000568558 MICAQ29983 383 aa12.25□□□□□ -0.45
CLN3-236ENST00000568558 LRRC10Q5BKY1 277 aa12.25□□□□□ -0.45
CLN3-236ENST00000568558 DHRS7BQ6IAN0 325 aaPredicted RBP12.25□□□□□ -0.45
CLN3-236ENST00000568558 TMEM179BQ7Z7N9 219 aa12.25□□□□□ -0.45
CLN3-236ENST00000568558 SPATA24Q86W54 205 aa12.25□□□□□ -0.45
CLN3-236ENST00000568558 FTMTQ8N4E7 242 aa12.25□□□□□ -0.45
CLN3-236ENST00000568558 OR10Z1Q8NGY1 313 aa12.25□□□□□ -0.45
CLN3-236ENST00000568558 PGAM5Q96HS1 289 aa12.25□□□□□ -0.45
CLN3-236ENST00000568558 DNTTIP1Q9H147 329 aa12.25□□□□□ -0.45
CLN3-236ENST00000568558 OR10A2Q9H208 303 aa12.25□□□□□ -0.45
CLN3-236ENST00000568558 RGCCQ9H4X1 137 aa12.25□□□□□ -0.45
CLN3-236ENST00000568558 MED20Q9H944 212 aa12.25□□□□□ -0.45
CLN3-236ENST00000568558 BRD7Q9NPI1 651 aa12.25□□□□□ -0.45
CLN3-236ENST00000568558 HAO2Q9NYQ3 351 aa12.25□□□□□ -0.45
CLN3-236ENST00000568558 VPREB3Q9UKI3 123 aa12.25□□□□□ -0.45
CLN3-236ENST00000568558 SAMHD1Q9Y3Z3 626 aaKnown RBP12.25□□□□□ -0.45
CLN3-236ENST00000568558 MPC1Q9Y5U8 109 aa12.25□□□□□ -0.45
CLN3-236ENST00000568558 A0A0G2JK05 382 aa12.24□□□□□ -0.45
CLN3-236ENST00000568558 TCRBV3S1A0A5B6 114 aa12.24□□□□□ -0.45
CLN3-236ENST00000568558 BTBD17A6NE02 478 aa12.24□□□□□ -0.45
CLN3-236ENST00000568558 ANXA2P2A6NMY6 339 aa12.24□□□□□ -0.45
CLN3-236ENST00000568558 NPFFO15130 113 aa12.24□□□□□ -0.45
CLN3-236ENST00000568558 TSPAN15O95858 294 aa12.24□□□□□ -0.45
CLN3-236ENST00000568558 EEF1B2P24534 225 aaKnown RBP12.24□□□□□ -0.45
CLN3-236ENST00000568558 GSTT1P30711 240 aa12.24□□□□□ -0.45
CLN3-236ENST00000568558 DLX1P56177 255 aa12.24□□□□□ -0.45
CLN3-236ENST00000568558 IL5RAQ01344 420 aa12.24□□□□□ -0.45
CLN3-236ENST00000568558 PRDX4Q13162 271 aa12.24□□□□□ -0.45
CLN3-236ENST00000568558 KLRD1Q13241 179 aa12.24□□□□□ -0.45
CLN3-236ENST00000568558 SNCBQ16143 134 aa12.24□□□□□ -0.45
CLN3-236ENST00000568558 ZNF788Q6ZQV5 615 aa12.24□□□□□ -0.45
CLN3-236ENST00000568558 SHFQ7M4L6 423 aa12.24□□□□□ -0.45
CLN3-236ENST00000568558 TIGD4Q8IY51 512 aa12.24□□□□□ -0.45
CLN3-236ENST00000568558 OR5T2Q8NGG2 359 aa12.24□□□□□ -0.45
CLN3-236ENST00000568558 H1FXQ92522 213 aaKnown RBP12.24□□□□□ -0.45
CLN3-236ENST00000568558 RAB3IPQ96QF0 476 aaPredicted RBP12.24□□□□□ -0.45
CLN3-236ENST00000568558 PKP2Q99959 881 aa12.24□□□□□ -0.45
CLN3-236ENST00000568558 RTL8AQ9BWD3 113 aa12.24□□□□□ -0.45
CLN3-236ENST00000568558 WDR13Q9H1Z4 485 aa12.24□□□□□ -0.45
CLN3-236ENST00000568558 REEP1Q9H902 201 aa12.24□□□□□ -0.45
CLN3-236ENST00000568558 SNTG1Q9NSN8 517 aa12.24□□□□□ -0.45
CLN3-236ENST00000568558 DNAJB11Q9UBS4 358 aa12.24□□□□□ -0.45
CLN3-236ENST00000568558 A0A1W2PRD5 423 aa12.23□□□□□ -0.45
CLN3-236ENST00000568558 A0A1W2PRF3 423 aa12.23□□□□□ -0.45
CLN3-236ENST00000568558 A0A1W2PRM7 423 aa12.23□□□□□ -0.45
CLN3-236ENST00000568558 NKX6-3A6NJ46 265 aa12.23□□□□□ -0.45
CLN3-236ENST00000568558 TMEM210A6NLX4 147 aa12.23□□□□□ -0.45
CLN3-236ENST00000568558 TSPAN9O75954 239 aa12.23□□□□□ -0.45
CLN3-236ENST00000568558 GLCEO94923 617 aa12.23□□□□□ -0.45
CLN3-236ENST00000568558 H2BFMP0C1H6 154 aa12.23□□□□□ -0.45
CLN3-236ENST00000568558 ACKR3P25106 362 aa12.23□□□□□ -0.45
CLN3-236ENST00000568558 GMFBP60983 142 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms