RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 CLEC2DQ9UHP7 191 aa11.63□□□□□ -0.55
CLN3-235ENST00000568497 FBXO9Q9UK97 447 aaPredicted RBP11.63□□□□□ -0.55
CLN3-235ENST00000568497 DAPL1A0PJW8 107 aa11.62□□□□□ -0.55
CLN3-235ENST00000568497 ANKRD30BLA7E2S9 258 aa11.62□□□□□ -0.55
CLN3-235ENST00000568497 TMEM178BH3BS89 294 aa11.62□□□□□ -0.55
CLN3-235ENST00000568497 J3QW42 95 aa11.62□□□□□ -0.55
CLN3-235ENST00000568497 XPNPEP2O43895 674 aa11.62□□□□□ -0.55
CLN3-235ENST00000568497 LIPAP38571 399 aa11.62□□□□□ -0.55
CLN3-235ENST00000568497 CAPGP40121 348 aa11.62□□□□□ -0.55
CLN3-235ENST00000568497 LYPD2Q6UXB3 125 aa11.62□□□□□ -0.55
CLN3-235ENST00000568497 MOB3CQ70IA8 216 aa11.62□□□□□ -0.55
CLN3-235ENST00000568497 C11orf53Q8IXP5 236 aa11.62□□□□□ -0.55
CLN3-235ENST00000568497 FGFRL1Q8N441 504 aa11.62□□□□□ -0.55
CLN3-235ENST00000568497 BPIFB2Q8N4F0 458 aa11.62□□□□□ -0.55
CLN3-235ENST00000568497 OR52H1Q8NGJ2 320 aa11.62□□□□□ -0.55
CLN3-235ENST00000568497 NPRL2Q8WTW4 380 aa11.62□□□□□ -0.55
CLN3-235ENST00000568497 HPSE2Q8WWQ2 592 aa11.62□□□□□ -0.55
CLN3-235ENST00000568497 RPL3LQ92901 407 aaKnown RBP11.62□□□□□ -0.55
CLN3-235ENST00000568497 RFKQ969G6 155 aa11.62□□□□□ -0.55
CLN3-235ENST00000568497 C4orf36Q96KX1 117 aa11.62□□□□□ -0.55
CLN3-235ENST00000568497 SLC6A7Q99884 636 aa11.62□□□□□ -0.55
CLN3-235ENST00000568497 GAL3ST1Q99999 423 aa11.62□□□□□ -0.55
CLN3-235ENST00000568497 ZNF649Q9BS31 505 aa11.62□□□□□ -0.55
CLN3-235ENST00000568497 ALG8Q9BVK2 526 aa11.62□□□□□ -0.55
CLN3-235ENST00000568497 DCLRE1BQ9H816 532 aa11.62□□□□□ -0.55
CLN3-235ENST00000568497 UNKLQ9H9P5 680 aaKnown RBP11.62□□□□□ -0.55
CLN3-235ENST00000568497 IL19Q9UHD0 177 aa11.62□□□□□ -0.55
CLN3-235ENST00000568497 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP11.62□□□□□ -0.55
CLN3-235ENST00000568497 EXOGQ9Y2C4 368 aaKnown RBP11.62□□□□□ -0.55
CLN3-235ENST00000568497 PCDHGB5Q9Y5G0 923 aa11.62□□□□□ -0.55
CLN3-235ENST00000568497 NPTNQ9Y639 398 aa11.62□□□□□ -0.55
CLN3-235ENST00000568497 TMEM14AQ9Y6G1 99 aa11.62□□□□□ -0.55
CLN3-235ENST00000568497 A0A1B0GW55 424 aa11.61□□□□□ -0.55
CLN3-235ENST00000568497 hCG_1807616A0A1W2PRN6 198 aa11.61□□□□□ -0.55
CLN3-235ENST00000568497 H0YHG0 523 aa11.61□□□□□ -0.55
CLN3-235ENST00000568497 IGHV2-70P01814 119 aa11.61□□□□□ -0.55
CLN3-235ENST00000568497 DUX4L2P0CJ85 424 aa11.61□□□□□ -0.55
CLN3-235ENST00000568497 DUX4L3P0CJ86 424 aa11.61□□□□□ -0.55
CLN3-235ENST00000568497 DUX4L4P0CJ87 422 aa11.61□□□□□ -0.55
CLN3-235ENST00000568497 DUX4L5P0CJ88 424 aa11.61□□□□□ -0.55
CLN3-235ENST00000568497 DUX4L6P0CJ89 424 aa11.61□□□□□ -0.55
CLN3-235ENST00000568497 DUX4L7P0CJ90 424 aa11.61□□□□□ -0.55
CLN3-235ENST00000568497 HKR1P10072 659 aa11.61□□□□□ -0.55
CLN3-235ENST00000568497 TUBG1P23258 451 aa11.61□□□□□ -0.55
CLN3-235ENST00000568497 SRP9P49458 86 aaKnown RBP11.61□□□□□ -0.55
CLN3-235ENST00000568497 ETV1P50549 477 aa11.61□□□□□ -0.55
CLN3-235ENST00000568497 GTF2A1P52655 376 aaPredicted RBP11.61□□□□□ -0.55
CLN3-235ENST00000568497 TMEM33P57088 247 aa11.61□□□□□ -0.55
CLN3-235ENST00000568497 ISL1P61371 349 aa11.61□□□□□ -0.55
CLN3-235ENST00000568497 UBA52P62987 128 aaKnown RBP11.61□□□□□ -0.55
CLN3-235ENST00000568497 EGR3Q06889 387 aa11.61□□□□□ -0.55
CLN3-235ENST00000568497 OR8B8Q15620 311 aa11.61□□□□□ -0.55
CLN3-235ENST00000568497 ZNF829Q3KNS6 432 aaPredicted RBP11.61□□□□□ -0.55
CLN3-235ENST00000568497 ZMAT1Q5H9K5 638 aa11.61□□□□□ -0.55
CLN3-235ENST00000568497 SLC25A30Q5SVS4 291 aa11.61□□□□□ -0.55
CLN3-235ENST00000568497 DUX4L9Q6RFH8 374 aaPredicted RBP11.61□□□□□ -0.55
CLN3-235ENST00000568497 KCTD8Q6ZWB6 473 aa11.61□□□□□ -0.55
CLN3-235ENST00000568497 RNF144BQ7Z419 303 aa11.61□□□□□ -0.55
CLN3-235ENST00000568497 CATSPERDQ86XM0 798 aa11.61□□□□□ -0.55
CLN3-235ENST00000568497 OR8S1Q8NH09 359 aa11.61□□□□□ -0.55
CLN3-235ENST00000568497 ZNF665Q9H7R5 613 aa11.61□□□□□ -0.55
CLN3-235ENST00000568497 ESM1Q9NQ30 184 aa11.61□□□□□ -0.55
CLN3-235ENST00000568497 TUBG2Q9NRH3 451 aa11.61□□□□□ -0.55
CLN3-235ENST00000568497 MRPL15Q9P015 296 aaKnown RBP11.61□□□□□ -0.55
CLN3-235ENST00000568497 DUX4Q9UBX2 424 aa11.61□□□□□ -0.55
CLN3-235ENST00000568497 CGGBP1Q9UFW8 167 aaPredicted RBP11.61□□□□□ -0.55
CLN3-235ENST00000568497 NUFIP1Q9UHK0 495 aaKnown RBP11.61□□□□□ -0.55
CLN3-235ENST00000568497 PIGLQ9Y2B2 252 aa11.61□□□□□ -0.55
CLN3-235ENST00000568497 PPIAL4AQ9Y536 164 aa11.61□□□□□ -0.55
CLN3-235ENST00000568497 WNK1Q9H4A3 2382 aa11.6□□□□□ -0.55
CLN3-235ENST00000568497 LOC105371242A0A075B767 164 aa11.6□□□□□ -0.55
CLN3-235ENST00000568497 A0A1B0GWJ7 208 aa11.6□□□□□ -0.55
CLN3-235ENST00000568497 ZNF254O75437 659 aa11.6□□□□□ -0.55
CLN3-235ENST00000568497 INMTO95050 263 aa11.6□□□□□ -0.55
CLN3-235ENST00000568497 IGLV3-1P01715 115 aa11.6□□□□□ -0.55
CLN3-235ENST00000568497 APOC1P02654 83 aa11.6□□□□□ -0.55
CLN3-235ENST00000568497 MSMBP08118 114 aa11.6□□□□□ -0.55
CLN3-235ENST00000568497 CD200P41217 278 aa11.6□□□□□ -0.55
CLN3-235ENST00000568497 LCN2P80188 198 aa11.6□□□□□ -0.55
CLN3-235ENST00000568497 MRPS11P82912 194 aaKnown RBP11.6□□□□□ -0.55
CLN3-235ENST00000568497 OR2G6Q5TZ20 316 aa11.6□□□□□ -0.55
CLN3-235ENST00000568497 MEDAGQ5VYS4 303 aa11.6□□□□□ -0.55
CLN3-235ENST00000568497 XAF1Q6GPH4 301 aa11.6□□□□□ -0.55
CLN3-235ENST00000568497 DEGS2Q6QHC5 323 aa11.6□□□□□ -0.55
CLN3-235ENST00000568497 ELMOD2Q8IZ81 293 aa11.6□□□□□ -0.55
CLN3-235ENST00000568497 TEX29Q8N6K0 151 aa11.6□□□□□ -0.55
CLN3-235ENST00000568497 ACBD7Q8N6N7 88 aa11.6□□□□□ -0.55
CLN3-235ENST00000568497 ZFP41Q8N8Y5 198 aa11.6□□□□□ -0.55
CLN3-235ENST00000568497 ZDHHC22Q8N966 263 aa11.6□□□□□ -0.55
CLN3-235ENST00000568497 OR51A4Q8NGJ6 313 aa11.6□□□□□ -0.55
CLN3-235ENST00000568497 OR14K1Q8NGZ2 314 aa11.6□□□□□ -0.55
CLN3-235ENST00000568497 PELI1Q96FA3 418 aa11.6□□□□□ -0.55
CLN3-235ENST00000568497 ZNF488Q96MN9 340 aa11.6□□□□□ -0.55
CLN3-235ENST00000568497 DIRC2Q96SL1 478 aa11.6□□□□□ -0.55
CLN3-235ENST00000568497 NKX3-1Q99801 234 aaPredicted RBP11.6□□□□□ -0.55
CLN3-235ENST00000568497 RASSF4Q9H2L5 321 aa11.6□□□□□ -0.55
CLN3-235ENST00000568497 CDIPTO14735 213 aa11.59□□□□□ -0.55
CLN3-235ENST00000568497 PHYHO14832 338 aa11.59□□□□□ -0.55
CLN3-235ENST00000568497 RHBDL1O75783 438 aa11.59□□□□□ -0.55
CLN3-235ENST00000568497 ATP6V1G2O95670 118 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms