RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 PAHP00439 452 aa13.81□□□□□ -0.2
CLN3-211ENST00000564091 ATP6V1B2P21281 511 aa13.81□□□□□ -0.2
CLN3-211ENST00000564091 GUCA2AQ02747 115 aa13.81□□□□□ -0.2
CLN3-211ENST00000564091 DGUOKQ16854 277 aa13.81□□□□□ -0.2
CLN3-211ENST00000564091 SLC35E4Q6ICL7 350 aa13.81□□□□□ -0.2
CLN3-211ENST00000564091 DEFB107AQ8IZN7 70 aa13.81□□□□□ -0.2
CLN3-211ENST00000564091 OR52H1Q8NGJ2 320 aa13.81□□□□□ -0.2
CLN3-211ENST00000564091 OTULINQ96BN8 352 aa13.81□□□□□ -0.2
CLN3-211ENST00000564091 PGAM5Q96HS1 289 aa13.81□□□□□ -0.2
CLN3-211ENST00000564091 INTS14Q96SY0 518 aa13.81□□□□□ -0.2
CLN3-211ENST00000564091 FGF23Q9GZV9 251 aaPredicted RBP13.81□□□□□ -0.2
CLN3-211ENST00000564091 SP140LQ9H930 580 aa13.81□□□□□ -0.2
CLN3-211ENST00000564091 ARL8BQ9NVJ2 186 aa13.81□□□□□ -0.2
CLN3-211ENST00000564091 VNN3Q9NY84 501 aa13.81□□□□□ -0.2
CLN3-211ENST00000564091 BAIAP2Q9UQB8 552 aa13.81□□□□□ -0.2
CLN3-211ENST00000564091 U3KQV3 271 aa13.81□□□□□ -0.2
CLN3-211ENST00000564091 ANKRD61A6NGH8 418 aa13.8□□□□□ -0.2
CLN3-211ENST00000564091 ANXA2P2A6NMY6 339 aa13.8□□□□□ -0.2
CLN3-211ENST00000564091 RIIAD1A6NNX1 92 aa13.8□□□□□ -0.2
CLN3-211ENST00000564091 ZNF850A8MQ14 1090 aa13.8□□□□□ -0.2
CLN3-211ENST00000564091 AKR7A2O43488 359 aa13.8□□□□□ -0.2
CLN3-211ENST00000564091 SNX3O60493 162 aa13.8□□□□□ -0.2
CLN3-211ENST00000564091 IFNGP01579 166 aa13.8□□□□□ -0.2
CLN3-211ENST00000564091 APOC1P02654 83 aa13.8□□□□□ -0.2
CLN3-211ENST00000564091 CFL1P23528 166 aaKnown RBP13.8□□□□□ -0.2
CLN3-211ENST00000564091 ACKR3P25106 362 aa13.8□□□□□ -0.2
CLN3-211ENST00000564091 GSTT1P30711 240 aa13.8□□□□□ -0.2
CLN3-211ENST00000564091 SAA4P35542 130 aa13.8□□□□□ -0.2
CLN3-211ENST00000564091 TGFBR2P37173 567 aa13.8□□□□□ -0.2
CLN3-211ENST00000564091 OPRL1P41146 370 aa13.8□□□□□ -0.2
CLN3-211ENST00000564091 BLVRAP53004 296 aa13.8□□□□□ -0.2
CLN3-211ENST00000564091 IL5RAQ01344 420 aa13.8□□□□□ -0.2
CLN3-211ENST00000564091 PRDX4Q13162 271 aa13.8□□□□□ -0.2
CLN3-211ENST00000564091 HIST2H2BDQ6DRA6 164 aa13.8□□□□□ -0.2
CLN3-211ENST00000564091 IQCF1Q8N6M8 205 aa13.8□□□□□ -0.2
CLN3-211ENST00000564091 CSNK2A3Q8NEV1 391 aa13.8□□□□□ -0.2
CLN3-211ENST00000564091 C8orf46Q8TAG6 207 aa13.8□□□□□ -0.2
CLN3-211ENST00000564091 DMRTB1Q96MA1 342 aa13.8□□□□□ -0.2
CLN3-211ENST00000564091 GAFA1Q96PS6 74 aa13.8□□□□□ -0.2
CLN3-211ENST00000564091 RAB3IPQ96QF0 476 aaPredicted RBP13.8□□□□□ -0.2
CLN3-211ENST00000564091 RTL8AQ9BWD3 113 aa13.8□□□□□ -0.2
CLN3-211ENST00000564091 PPA2Q9H2U2 334 aa13.8□□□□□ -0.2
CLN3-211ENST00000564091 SIGLEC9Q9Y336 463 aa13.8□□□□□ -0.2
CLN3-211ENST00000564091 H2BFMP0C1H6 154 aa13.79□□□□□ -0.2
CLN3-211ENST00000564091 ZNF3P17036 446 aa13.79□□□□□ -0.2
CLN3-211ENST00000564091 NDUFB7P17568 137 aa13.79□□□□□ -0.2
CLN3-211ENST00000564091 POU1F1P28069 291 aa13.79□□□□□ -0.2
CLN3-211ENST00000564091 MAGEA2P43356 314 aa13.79□□□□□ -0.2
CLN3-211ENST00000564091 MXRA7P84157 204 aa13.79□□□□□ -0.2
CLN3-211ENST00000564091 C2orf68Q2NKX9 166 aa13.79□□□□□ -0.2
CLN3-211ENST00000564091 ZNF788Q6ZQV5 615 aa13.79□□□□□ -0.2
CLN3-211ENST00000564091 KCTD8Q6ZWB6 473 aa13.79□□□□□ -0.2
CLN3-211ENST00000564091 OR10Z1Q8NGY1 313 aa13.79□□□□□ -0.2
CLN3-211ENST00000564091 ANGPTL6Q8NI99 470 aa13.79□□□□□ -0.2
CLN3-211ENST00000564091 C17orf50Q8WW18 174 aa13.79□□□□□ -0.2
CLN3-211ENST00000564091 OR5P3Q8WZ94 311 aa13.79□□□□□ -0.2
CLN3-211ENST00000564091 PIGCQ92535 297 aa13.79□□□□□ -0.2
CLN3-211ENST00000564091 RNF170Q96K19 258 aa13.79□□□□□ -0.2
CLN3-211ENST00000564091 MED4Q9NPJ6 270 aa13.79□□□□□ -0.2
CLN3-211ENST00000564091 CMC2Q9NRP2 79 aa13.79□□□□□ -0.2
CLN3-211ENST00000564091 SLC25A10Q9UBX3 287 aaPredicted RBP13.79□□□□□ -0.2
CLN3-211ENST00000564091 TAGLN3Q9UI15 199 aa13.79□□□□□ -0.2
CLN3-211ENST00000564091 MPC1Q9Y5U8 109 aa13.79□□□□□ -0.2
CLN3-211ENST00000564091 NKX6-3A6NJ46 265 aa13.78□□□□□ -0.2
CLN3-211ENST00000564091 CSF1P09603 554 aa13.78□□□□□ -0.2
CLN3-211ENST00000564091 UBE2E1P51965 193 aa13.78□□□□□ -0.2
CLN3-211ENST00000564091 MICAQ29983 383 aa13.78□□□□□ -0.2
CLN3-211ENST00000564091 C16orf89Q6UX73 402 aa13.78□□□□□ -0.2
CLN3-211ENST00000564091 TIGD4Q8IY51 512 aa13.78□□□□□ -0.2
CLN3-211ENST00000564091 FTMTQ8N4E7 242 aa13.78□□□□□ -0.2
CLN3-211ENST00000564091 OR5R1Q8NH85 324 aa13.78□□□□□ -0.2
CLN3-211ENST00000564091 PPP1R35Q8TAP8 253 aa13.78□□□□□ -0.2
CLN3-211ENST00000564091 DUS3LQ96G46 650 aaKnown RBP13.78□□□□□ -0.2
CLN3-211ENST00000564091 NIPSNAP1Q9BPW8 284 aa13.78□□□□□ -0.2
CLN3-211ENST00000564091 DGCR6LQ9BY27 220 aa13.78□□□□□ -0.2
CLN3-211ENST00000564091 DNTTIP1Q9H147 329 aa13.78□□□□□ -0.2
CLN3-211ENST00000564091 OR51V1Q9H2C8 321 aa13.78□□□□□ -0.2
CLN3-211ENST00000564091 RGCCQ9H4X1 137 aa13.78□□□□□ -0.2
CLN3-211ENST00000564091 ELL3Q9HB65 397 aaPredicted RBP13.78□□□□□ -0.2
CLN3-211ENST00000564091 TAS2R1Q9NYW7 299 aa13.78□□□□□ -0.2
CLN3-211ENST00000564091 SAMHD1Q9Y3Z3 626 aaKnown RBP13.78□□□□□ -0.2
CLN3-211ENST00000564091 A0A1W2PQ09 198 aa13.77□□□□□ -0.21
CLN3-211ENST00000564091 TCRBV5S2A0A599 114 aa13.77□□□□□ -0.21
CLN3-211ENST00000564091 TMEM210A6NLX4 147 aa13.77□□□□□ -0.21
CLN3-211ENST00000564091 H3BUX3 64 aa13.77□□□□□ -0.21
CLN3-211ENST00000564091 SIGLEC5O15389 551 aa13.77□□□□□ -0.21
CLN3-211ENST00000564091 GLCEO94923 617 aa13.77□□□□□ -0.21
CLN3-211ENST00000564091 CST4P01036 141 aa13.77□□□□□ -0.21
CLN3-211ENST00000564091 PAX6P26367 422 aa13.77□□□□□ -0.21
CLN3-211ENST00000564091 GABRA5P31644 462 aa13.77□□□□□ -0.21
CLN3-211ENST00000564091 GABRA2P47869 451 aa13.77□□□□□ -0.21
CLN3-211ENST00000564091 LY6EQ16553 131 aa13.77□□□□□ -0.21
CLN3-211ENST00000564091 FAM76BQ5HYJ3 339 aa13.77□□□□□ -0.21
CLN3-211ENST00000564091 C1orf122Q6ZSJ8 110 aa13.77□□□□□ -0.21
CLN3-211ENST00000564091 SHFQ7M4L6 423 aa13.77□□□□□ -0.21
CLN3-211ENST00000564091 HIST2H2ABQ8IUE6 130 aaPredicted RBP13.77□□□□□ -0.21
CLN3-211ENST00000564091 C11orf44Q8N8P7 122 aa13.77□□□□□ -0.21
CLN3-211ENST00000564091 THEM6Q8WUY1 208 aa13.77□□□□□ -0.21
CLN3-211ENST00000564091 HPSE2Q8WWQ2 592 aa13.77□□□□□ -0.21
CLN3-211ENST00000564091 RORBQ92753 470 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms