RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 SCOCQ9UIL1 159 aa7.87□□□□□ -1.15
LDLR-210ENST00000559340 PLEKHA6Q9Y2H5 1048 aa7.87□□□□□ -1.15
LDLR-210ENST00000559340 RHBDD3Q9Y3P4 386 aa7.87□□□□□ -1.15
LDLR-210ENST00000559340 SIRT4Q9Y6E7 314 aaPredicted RBP7.87□□□□□ -1.15
LDLR-210ENST00000559340 TRBV5-5A0A0J9YX44 114 aa7.86□□□□□ -1.15
LDLR-210ENST00000559340 A0A1B0GWJ7 208 aa7.86□□□□□ -1.15
LDLR-210ENST00000559340 MEGF11A6BM72 1044 aa7.86□□□□□ -1.15
LDLR-210ENST00000559340 ANKRD61A6NGH8 418 aa7.86□□□□□ -1.15
LDLR-210ENST00000559340 ZNF850A8MQ14 1090 aa7.86□□□□□ -1.15
LDLR-210ENST00000559340 ZNF879B4DU55 563 aa7.86□□□□□ -1.15
LDLR-210ENST00000559340 IGHV1-46P01743 117 aa7.86□□□□□ -1.15
LDLR-210ENST00000559340 CSF3P09919 207 aa7.86□□□□□ -1.15
LDLR-210ENST00000559340 FAHP16930 419 aa7.86□□□□□ -1.15
LDLR-210ENST00000559340 GALP22466 123 aa7.86□□□□□ -1.15
LDLR-210ENST00000559340 ACKR3P25106 362 aa7.86□□□□□ -1.15
LDLR-210ENST00000559340 GABRA5P31644 462 aa7.86□□□□□ -1.15
LDLR-210ENST00000559340 CD200P41217 278 aa7.86□□□□□ -1.15
LDLR-210ENST00000559340 FUT6P51993 359 aa7.86□□□□□ -1.15
LDLR-210ENST00000559340 ATP5J2P56134 94 aa7.86□□□□□ -1.15
LDLR-210ENST00000559340 DSCR9P59020 149 aa7.86□□□□□ -1.15
LDLR-210ENST00000559340 PPP3R1P63098 170 aa7.86□□□□□ -1.15
LDLR-210ENST00000559340 GNG3P63215 75 aa7.86□□□□□ -1.15
LDLR-210ENST00000559340 MRPS11P82912 194 aaKnown RBP7.86□□□□□ -1.15
LDLR-210ENST00000559340 CEACAM21Q3KPI0 293 aa7.86□□□□□ -1.15
LDLR-210ENST00000559340 TIMM50Q3ZCQ8 353 aa7.86□□□□□ -1.15
LDLR-210ENST00000559340 ACSM3Q53FZ2 586 aa7.86□□□□□ -1.15
LDLR-210ENST00000559340 PLCXD3Q63HM9 321 aa7.86□□□□□ -1.15
LDLR-210ENST00000559340 CDH24Q86UP0 819 aa7.86□□□□□ -1.15
LDLR-210ENST00000559340 PHC2Q8IXK0 858 aa7.86□□□□□ -1.15
LDLR-210ENST00000559340 PARP16Q8N5Y8 322 aa7.86□□□□□ -1.15
LDLR-210ENST00000559340 HPS1Q92902 700 aa7.86□□□□□ -1.15
LDLR-210ENST00000559340 MUL1Q969V5 352 aa7.86□□□□□ -1.15
LDLR-210ENST00000559340 RNF170Q96K19 258 aa7.86□□□□□ -1.15
LDLR-210ENST00000559340 PGLYRP3Q96LB9 341 aa7.86□□□□□ -1.15
LDLR-210ENST00000559340 OPALINQ96PE5 141 aa7.86□□□□□ -1.15
LDLR-210ENST00000559340 TMED9Q9BVK6 235 aa7.86□□□□□ -1.15
LDLR-210ENST00000559340 GSX2Q9BZM3 304 aa7.86□□□□□ -1.15
LDLR-210ENST00000559340 CHST5Q9GZS9 411 aa7.86□□□□□ -1.15
LDLR-210ENST00000559340 ZCCHC4Q9H5U6 513 aa7.86□□□□□ -1.15
LDLR-210ENST00000559340 DLL4Q9NR61 685 aa7.86□□□□□ -1.15
LDLR-210ENST00000559340 ZNF701Q9NV72 531 aaPredicted RBP7.86□□□□□ -1.15
LDLR-210ENST00000559340 SSR3Q9UNL2 185 aa7.86□□□□□ -1.15
LDLR-210ENST00000559340 GSTK1Q9Y2Q3 226 aa7.86□□□□□ -1.15
LDLR-210ENST00000559340 TEP1Q99973 2627 aaKnown RBP7.86□□□□□ -1.15
LDLR-210ENST00000559340 ZSCAN5BA6NJL1 495 aa7.85□□□□□ -1.15
LDLR-210ENST00000559340 LRRC30A6NM36 301 aa7.85□□□□□ -1.15
LDLR-210ENST00000559340 H3BSH0 61 aa7.85□□□□□ -1.15
LDLR-210ENST00000559340 GPX5O75715 221 aa7.85□□□□□ -1.15
LDLR-210ENST00000559340 ARL6IP5O75915 188 aa7.85□□□□□ -1.15
LDLR-210ENST00000559340 RGS9O75916 674 aaPredicted RBP7.85□□□□□ -1.15
LDLR-210ENST00000559340 INMTO95050 263 aa7.85□□□□□ -1.15
LDLR-210ENST00000559340 F12P00748 615 aaPredicted RBP7.85□□□□□ -1.15
LDLR-210ENST00000559340 IRF2P14316 349 aa7.85□□□□□ -1.15
LDLR-210ENST00000559340 ATF1P18846 271 aa7.85□□□□□ -1.15
LDLR-210ENST00000559340 RAB3AP20336 220 aa7.85□□□□□ -1.15
LDLR-210ENST00000559340 TGFBR2P37173 567 aa7.85□□□□□ -1.15
LDLR-210ENST00000559340 CDKN1AP38936 164 aa7.85□□□□□ -1.15
LDLR-210ENST00000559340 SOX2P48431 317 aa7.85□□□□□ -1.15
LDLR-210ENST00000559340 ATP1B3P54709 279 aa7.85□□□□□ -1.15
LDLR-210ENST00000559340 KRTAP10-9P60411 292 aa7.85□□□□□ -1.15
LDLR-210ENST00000559340 TNK1Q13470 666 aa7.85□□□□□ -1.15
LDLR-210ENST00000559340 DEFB113Q30KQ7 82 aa7.85□□□□□ -1.15
LDLR-210ENST00000559340 TMEM42Q69YG0 159 aa7.85□□□□□ -1.15
LDLR-210ENST00000559340 UNQ9370/PRO34162Q6UXP9 181 aa7.85□□□□□ -1.15
LDLR-210ENST00000559340 GDPGP1Q6ZNW5 385 aa7.85□□□□□ -1.15
LDLR-210ENST00000559340 Q6ZR03 302 aa7.85□□□□□ -1.15
LDLR-210ENST00000559340 CEACAM19Q7Z692 300 aa7.85□□□□□ -1.15
LDLR-210ENST00000559340 ZNF573Q86YE8 665 aa7.85□□□□□ -1.15
LDLR-210ENST00000559340 C1orf87Q8N0U7 546 aa7.85□□□□□ -1.15
LDLR-210ENST00000559340 DNAAF1Q8NEP3 725 aa7.85□□□□□ -1.15
LDLR-210ENST00000559340 OR11L1Q8NGX0 322 aa7.85□□□□□ -1.15
LDLR-210ENST00000559340 ZNF671Q8TAW3 534 aa7.85□□□□□ -1.15
LDLR-210ENST00000559340 UBASH3BQ8TF42 649 aa7.85□□□□□ -1.15
LDLR-210ENST00000559340 IGFBPL1Q8WX77 278 aa7.85□□□□□ -1.15
LDLR-210ENST00000559340 OR5P3Q8WZ94 311 aa7.85□□□□□ -1.15
LDLR-210ENST00000559340 RDH5Q92781 318 aa7.85□□□□□ -1.15
LDLR-210ENST00000559340 TMEM106AQ96A25 262 aa7.85□□□□□ -1.15
LDLR-210ENST00000559340 SPSB1Q96BD6 273 aa7.85□□□□□ -1.15
LDLR-210ENST00000559340 ADAT3Q96EY9 351 aaPredicted RBP7.85□□□□□ -1.15
LDLR-210ENST00000559340 BORCS8Q96FH0 119 aa7.85□□□□□ -1.15
LDLR-210ENST00000559340 SOX7Q9BT81 388 aa7.85□□□□□ -1.15
LDLR-210ENST00000559340 TPK1Q9H3S4 243 aa7.85□□□□□ -1.15
LDLR-210ENST00000559340 FN3KRPQ9HA64 309 aa7.85□□□□□ -1.15
LDLR-210ENST00000559340 SAP30LQ9HAJ7 183 aa7.85□□□□□ -1.15
LDLR-210ENST00000559340 NDUFB11Q9NX14 153 aa7.85□□□□□ -1.15
LDLR-210ENST00000559340 FOXJ3Q9UPW0 622 aa7.85□□□□□ -1.15
LDLR-210ENST00000559340 HRNRQ86YZ3 2850 aaPredicted RBP7.85□□□□□ -1.15
LDLR-210ENST00000559340 TRDV1A0A1B0GX56 115 aa7.84□□□□□ -1.15
LDLR-210ENST00000559340 ZNF732B4DXR9 585 aa7.84□□□□□ -1.15
LDLR-210ENST00000559340 F5H5P2 479 aa7.84□□□□□ -1.15
LDLR-210ENST00000559340 MLNRO43193 412 aa7.84□□□□□ -1.15
LDLR-210ENST00000559340 LILRA1O75019 489 aa7.84□□□□□ -1.15
LDLR-210ENST00000559340 CYB5AP00167 134 aa7.84□□□□□ -1.15
LDLR-210ENST00000559340 ALDOBP05062 364 aa7.84□□□□□ -1.15
LDLR-210ENST00000559340 CD36P16671 472 aa7.84□□□□□ -1.15
LDLR-210ENST00000559340 ANOS1P23352 680 aa7.84□□□□□ -1.15
LDLR-210ENST00000559340 CRYBB2P43320 205 aa7.84□□□□□ -1.15
LDLR-210ENST00000559340 GATA4P43694 442 aa7.84□□□□□ -1.15
LDLR-210ENST00000559340 PTH2RP49190 550 aa7.84□□□□□ -1.15
LDLR-210ENST00000559340 RBP2P50120 134 aa7.84□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms