RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 TNS2Q63HR2 1409 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 A0A096LNJ9 63 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 FAM240BA0A1B0GVZ2 78 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 TRAPPC13A5PLN9 417 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 FABP12A6NFH5 140 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 M0R233 179 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 PDCD5O14737 125 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 ZNF264O43296 627 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 TPST1O60507 370 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 SLC19A2O60779 497 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 RAMP1O60894 148 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 WBP4O75554 376 aaKnown RBP2.19□□□□□ -2.06
VPS13C-208ENST00000559119 AQP8O94778 261 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 AKR7A3O95154 331 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 CXCL14O95715 111 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 FADS2O95864 444 aaKnown RBP2.19□□□□□ -2.06
VPS13C-208ENST00000559119 CFDP00746 253 aaPredicted RBP2.19□□□□□ -2.06
VPS13C-208ENST00000559119 SERPINA5P05154 406 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 GLAP06280 429 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 NMBP08949 121 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 ZNF286BP0CG31 522 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 SULT1A3P0DMM9 295 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 SULT1A4P0DMN0 295 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 ADRB3P13945 408 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 PAICSP22234 425 aaKnown RBP2.19□□□□□ -2.06
VPS13C-208ENST00000559119 SLC6A1P30531 599 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 FMO3P31513 532 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 YWHABP31946 246 aaKnown RBP2.19□□□□□ -2.06
VPS13C-208ENST00000559119 SDC2P34741 201 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 TGFBR1P36897 503 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 PITPNBP48739 271 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 DEFA6Q01524 100 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 ZNF33AQ06730 810 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 CYP24A1Q07973 514 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 DGCR6Q14129 220 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 RCAN2Q14206 197 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 GRB7Q14451 532 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 TAF1AQ15573 450 aaPredicted RBP2.19□□□□□ -2.06
VPS13C-208ENST00000559119 CHRNA6Q15825 494 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 SSX2Q16385 188 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 SNRNP35Q16560 246 aaKnown RBP2.19□□□□□ -2.06
VPS13C-208ENST00000559119 VPS26BQ4G0F5 336 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 PTPN20Q4JDL3 420 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 PYCR3Q53H96 274 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 SPIN4Q56A73 249 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 C10orf91Q5T1B1 145 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 AVPI1Q5T686 147 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 PRAMEF7Q5VXH5 474 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 TPGS2Q68CL5 300 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 FAHD1Q6P587 224 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 ERICH5Q6P6B1 374 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 FAM131AQ6UXB0 335 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 CYHR1Q6ZMK1 362 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 RASSF6Q6ZTQ3 369 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 FAM92BQ6ZTR7 304 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 TAC4Q86UU9 113 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 COMTD1Q86VU5 262 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 TMEM17Q86X19 198 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 PSTKQ8IV42 348 aaKnown RBP2.19□□□□□ -2.06
VPS13C-208ENST00000559119 ZNF547Q8IVP9 402 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 PDZD9Q8IXQ8 264 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 FAM71CQ8NEG0 241 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 IPMKQ8NFU5 416 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 OR6C4Q8NGE1 309 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 OR56B1Q8NGI3 324 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 OR52E1Q8NGJ3 308 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 OR52K1Q8NGK4 314 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 OR4A15Q8NGL6 344 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 OR6X1Q8NH79 312 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 RNASE11Q8TAA1 199 aaKnown RBP2.19□□□□□ -2.06
VPS13C-208ENST00000559119 CNIH3Q8TBE1 160 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 ASB13Q8WXK3 278 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 AP3S1Q92572 193 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 SLC25A46Q96AG3 418 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 UPRTQ96BW1 309 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 L3HYPDHQ96EM0 354 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 CERS2Q96G23 380 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 NARS2Q96I59 477 aaKnown RBP2.19□□□□□ -2.06
VPS13C-208ENST00000559119 CPB2Q96IY4 423 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 SENP8Q96LD8 212 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 SPATA13Q96N96 652 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 MCEEQ96PE7 176 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 ZBTB18Q99592 522 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 KCNS3Q9BQ31 491 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 C7orf50Q9BRJ6 194 aaKnown RBP2.19□□□□□ -2.06
VPS13C-208ENST00000559119 COPS4Q9BT78 406 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 TMEM43Q9BTV4 400 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 BBS2Q9BXC9 721 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 BEX2Q9BXY8 128 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 GABARAPL3Q9BY60 117 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 GPR61Q9BZJ8 451 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 OR51E2Q9H255 320 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 RHOJQ9H4E5 214 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 MYOZ1Q9NP98 299 aaPredicted RBP2.19□□□□□ -2.06
VPS13C-208ENST00000559119 ISYNA1Q9NPH2 558 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 NIT2Q9NQR4 276 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 AIG1Q9NVV5 245 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 THUMPD1Q9NXG2 353 aaKnown RBP2.19□□□□□ -2.06
VPS13C-208ENST00000559119 METTL1Q9UBP6 276 aaKnown RBP2.19□□□□□ -2.06
VPS13C-208ENST00000559119 SEC14L3Q9UDX4 400 aa2.19□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms