RNA–Protein interactions for RNA: ENST00000554437.5

SCFD1-211, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 688 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-211ENST00000554437 UBE2E2Q96LR5 201 aa3.34□□□□□ -1.87
SCFD1-211ENST00000554437 ZNF285Q96NJ3 590 aa3.34□□□□□ -1.87
SCFD1-211ENST00000554437 VAT1Q99536 393 aa3.34□□□□□ -1.87
SCFD1-211ENST00000554437 P2RX4Q99571 388 aa3.34□□□□□ -1.87
SCFD1-211ENST00000554437 GABRG3Q99928 467 aa3.34□□□□□ -1.87
SCFD1-211ENST00000554437 PDCD1LG2Q9BQ51 273 aa3.34□□□□□ -1.87
SCFD1-211ENST00000554437 EBF4Q9BQW3 602 aa3.34□□□□□ -1.87
SCFD1-211ENST00000554437 RIOK2Q9BVS4 552 aaKnown RBP3.34□□□□□ -1.87
SCFD1-211ENST00000554437 NXF2Q9GZY0 626 aaKnown RBP3.34□□□□□ -1.87
SCFD1-211ENST00000554437 SHPKQ9UHJ6 478 aa3.34□□□□□ -1.87
SCFD1-211ENST00000554437 RAB23Q9ULC3 237 aa3.34□□□□□ -1.87
SCFD1-211ENST00000554437 NEU3Q9UQ49 428 aa3.34□□□□□ -1.87
SCFD1-211ENST00000554437 AP3M1Q9Y2T2 418 aa3.34□□□□□ -1.87
SCFD1-211ENST00000554437 USH1CQ9Y6N9 552 aa3.34□□□□□ -1.87
SCFD1-211ENST00000554437 ISPDA4D126 451 aa3.33□□□□□ -1.88
SCFD1-211ENST00000554437 GJE1A6NN92 205 aa3.33□□□□□ -1.88
SCFD1-211ENST00000554437 C12orf77C9JDV5 145 aa3.33□□□□□ -1.88
SCFD1-211ENST00000554437 AGPAT2O15120 278 aa3.33□□□□□ -1.88
SCFD1-211ENST00000554437 FGF16O43320 207 aa3.33□□□□□ -1.88
SCFD1-211ENST00000554437 SRP72O76094 671 aaKnown RBP3.33□□□□□ -1.88
SCFD1-211ENST00000554437 CD8AP01732 235 aa3.33□□□□□ -1.88
SCFD1-211ENST00000554437 PGA5P0DJD9 388 aa3.33□□□□□ -1.88
SCFD1-211ENST00000554437 ZNF35P13682 527 aa3.33□□□□□ -1.88
SCFD1-211ENST00000554437 RPA3P35244 121 aaPredicted RBP3.33□□□□□ -1.88
SCFD1-211ENST00000554437 HRH1P35367 487 aa3.33□□□□□ -1.88
SCFD1-211ENST00000554437 TUFMP49411 452 aaKnown RBP3.33□□□□□ -1.88
SCFD1-211ENST00000554437 SERPINB9P50453 376 aa3.33□□□□□ -1.88
SCFD1-211ENST00000554437 STC1P52823 247 aa3.33□□□□□ -1.88
SCFD1-211ENST00000554437 APOC4P55056 127 aa3.33□□□□□ -1.88
SCFD1-211ENST00000554437 CD164Q04900 197 aa3.33□□□□□ -1.88
SCFD1-211ENST00000554437 PPIDQ08752 370 aaKnown RBP3.33□□□□□ -1.88
SCFD1-211ENST00000554437 C2orf54Q08AI8 447 aa3.33□□□□□ -1.88
SCFD1-211ENST00000554437 SMARCB1Q12824 385 aa3.33□□□□□ -1.88
SCFD1-211ENST00000554437 TSPAN31Q12999 210 aa3.33□□□□□ -1.88
SCFD1-211ENST00000554437 GPNMBQ14956 572 aa3.33□□□□□ -1.88
SCFD1-211ENST00000554437 TRIP13Q15645 432 aaPredicted RBP3.33□□□□□ -1.88
SCFD1-211ENST00000554437 KRTAP13-3Q3SY46 172 aa3.33□□□□□ -1.88
SCFD1-211ENST00000554437 GCSAMLQ5JQS6 135 aa3.33□□□□□ -1.88
SCFD1-211ENST00000554437 OGFRL1Q5TC84 451 aaPredicted RBP3.33□□□□□ -1.88
SCFD1-211ENST00000554437 THOC7Q6I9Y2 204 aaKnown RBP3.33□□□□□ -1.88
SCFD1-211ENST00000554437 RAB43Q86YS6 212 aa3.33□□□□□ -1.88
SCFD1-211ENST00000554437 HS3ST5Q8IZT8 346 aa3.33□□□□□ -1.88
SCFD1-211ENST00000554437 DAW1Q8N136 415 aa3.33□□□□□ -1.88
SCFD1-211ENST00000554437 C6orf223Q8N319 242 aa3.33□□□□□ -1.88
SCFD1-211ENST00000554437 OR51G1Q8NGK1 321 aa3.33□□□□□ -1.88
SCFD1-211ENST00000554437 OR10Z1Q8NGY1 313 aa3.33□□□□□ -1.88
SCFD1-211ENST00000554437 OR2AE1Q8NHA4 323 aa3.33□□□□□ -1.88
SCFD1-211ENST00000554437 ERMNQ8TAM6 284 aa3.33□□□□□ -1.88
SCFD1-211ENST00000554437 PTH2Q96A98 100 aa3.33□□□□□ -1.88
SCFD1-211ENST00000554437 OPTNQ96CV9 577 aa3.33□□□□□ -1.88
SCFD1-211ENST00000554437 SGTBQ96EQ0 304 aa3.33□□□□□ -1.88
SCFD1-211ENST00000554437 CCDC42Q96M95 316 aa3.33□□□□□ -1.88
SCFD1-211ENST00000554437 HBEGFQ99075 208 aa3.33□□□□□ -1.88
SCFD1-211ENST00000554437 SH3GL3Q99963 347 aa3.33□□□□□ -1.88
SCFD1-211ENST00000554437 APOL4Q9BPW4 351 aa3.33□□□□□ -1.88
SCFD1-211ENST00000554437 RASL11BQ9BPW5 248 aa3.33□□□□□ -1.88
SCFD1-211ENST00000554437 MRPS26Q9BYN8 205 aaKnown RBP3.33□□□□□ -1.88
SCFD1-211ENST00000554437 DHX35Q9H5Z1 703 aaKnown RBP3.33□□□□□ -1.88
SCFD1-211ENST00000554437 RPF2Q9H7B2 306 aaKnown RBP3.33□□□□□ -1.88
SCFD1-211ENST00000554437 ZDHHC11Q9H8X9 412 aa3.33□□□□□ -1.88
SCFD1-211ENST00000554437 SPANXB1Q9NS25 103 aaPredicted RBP3.33□□□□□ -1.88
SCFD1-211ENST00000554437 FKBP14Q9NWM8 211 aa3.33□□□□□ -1.88
SCFD1-211ENST00000554437 SLC22A13Q9Y226 551 aa3.33□□□□□ -1.88
SCFD1-211ENST00000554437 ST3GAL6Q9Y274 331 aa3.33□□□□□ -1.88
SCFD1-211ENST00000554437 WIF1Q9Y5W5 379 aa3.33□□□□□ -1.88
SCFD1-211ENST00000554437 EVC2Q86UK5 1308 aa3.33□□□□□ -1.88
SCFD1-211ENST00000554437 MAPK8IP3Q9UPT6 1336 aa3.33□□□□□ -1.88
SCFD1-211ENST00000554437 RAB3GAP2Q9H2M9 1393 aa3.33□□□□□ -1.88
SCFD1-211ENST00000554437 MEGF6O75095 1541 aa3.33□□□□□ -1.88
SCFD1-211ENST00000554437 IGKV1D-13A0A0B4J2D9 117 aa3.32□□□□□ -1.88
SCFD1-211ENST00000554437 A0A1W2PQL4 384 aaPredicted RBP3.32□□□□□ -1.88
SCFD1-211ENST00000554437 A0A1W2PRG6 482 aa3.32□□□□□ -1.88
SCFD1-211ENST00000554437 ZNF233A6NK53 670 aa3.32□□□□□ -1.88
SCFD1-211ENST00000554437 M0R1B8 84 aa3.32□□□□□ -1.88
SCFD1-211ENST00000554437 MAGEB4O15481 346 aaPredicted RBP3.32□□□□□ -1.88
SCFD1-211ENST00000554437 FABP7O15540 132 aa3.32□□□□□ -1.88
SCFD1-211ENST00000554437 PGA4P0DJD7 388 aa3.32□□□□□ -1.88
SCFD1-211ENST00000554437 PGA3P0DJD8 388 aa3.32□□□□□ -1.88
SCFD1-211ENST00000554437 IGKV1-13P0DP09 117 aa3.32□□□□□ -1.88
SCFD1-211ENST00000554437 CD37P11049 281 aa3.32□□□□□ -1.88
SCFD1-211ENST00000554437 VDAC2P45880 294 aaPredicted RBP3.32□□□□□ -1.88
SCFD1-211ENST00000554437 GALR1P47211 349 aa3.32□□□□□ -1.88
SCFD1-211ENST00000554437 RND2P52198 227 aa3.32□□□□□ -1.88
SCFD1-211ENST00000554437 RAP1GDS1P52306 607 aa3.32□□□□□ -1.88
SCFD1-211ENST00000554437 OR12D2P58182 307 aa3.32□□□□□ -1.88
SCFD1-211ENST00000554437 RAB8AP61006 207 aa3.32□□□□□ -1.88
SCFD1-211ENST00000554437 PPP1CBP62140 327 aa3.32□□□□□ -1.88
SCFD1-211ENST00000554437 TMED2Q15363 201 aa3.32□□□□□ -1.88
SCFD1-211ENST00000554437 ZNF630Q2M218 657 aaPredicted RBP3.32□□□□□ -1.88
SCFD1-211ENST00000554437 AKIRIN2Q53H80 203 aa3.32□□□□□ -1.88
SCFD1-211ENST00000554437 OR2T5Q6IEZ7 315 aa3.32□□□□□ -1.88
SCFD1-211ENST00000554437 FAM45BPQ6NSW5 357 aa3.32□□□□□ -1.88
SCFD1-211ENST00000554437 MED27Q6P2C8 311 aa3.32□□□□□ -1.88
SCFD1-211ENST00000554437 EPGNQ6UW88 154 aa3.32□□□□□ -1.88
SCFD1-211ENST00000554437 ZADH2Q8N4Q0 377 aa3.32□□□□□ -1.88
SCFD1-211ENST00000554437 ZFP41Q8N8Y5 198 aa3.32□□□□□ -1.88
SCFD1-211ENST00000554437 OR2T29Q8NH02 315 aa3.32□□□□□ -1.88
SCFD1-211ENST00000554437 ENKURQ8TC29 256 aa3.32□□□□□ -1.88
SCFD1-211ENST00000554437 ACTL9Q8TC94 416 aa3.32□□□□□ -1.88
SCFD1-211ENST00000554437 FAM45AQ8TCE6 357 aa3.32□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms