RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 NIPAL2Q9H841 368 aa13.52□□□□□ -0.25
VPS29-207ENST00000549970 TNFRSF19Q9NS68 423 aa13.52□□□□□ -0.25
VPS29-207ENST00000549970 KAAG1Q9UBP8 84 aa13.52□□□□□ -0.25
VPS29-207ENST00000549970 CCDC182A6NF36 153 aa13.51□□□□□ -0.25
VPS29-207ENST00000549970 SRRM5B3KS81 715 aa13.51□□□□□ -0.25
VPS29-207ENST00000549970 GSC2O15499 205 aa13.51□□□□□ -0.25
VPS29-207ENST00000549970 CST4P01036 141 aa13.51□□□□□ -0.25
VPS29-207ENST00000549970 DAPP51397 102 aa13.51□□□□□ -0.25
VPS29-207ENST00000549970 BPIFB3P59826 476 aa13.51□□□□□ -0.25
VPS29-207ENST00000549970 ARF6P62330 175 aa13.51□□□□□ -0.25
VPS29-207ENST00000549970 LCN1P1Q5VSP4 162 aa13.51□□□□□ -0.25
VPS29-207ENST00000549970 FAHD1Q6P587 224 aa13.51□□□□□ -0.25
VPS29-207ENST00000549970 SLC36A1Q7Z2H8 476 aa13.51□□□□□ -0.25
VPS29-207ENST00000549970 FAM216BQ8N7L0 139 aa13.51□□□□□ -0.25
VPS29-207ENST00000549970 OR5T2Q8NGG2 359 aa13.51□□□□□ -0.25
VPS29-207ENST00000549970 SGMS2Q8NHU3 365 aa13.51□□□□□ -0.25
VPS29-207ENST00000549970 FAM81AQ8TBF8 368 aa13.51□□□□□ -0.25
VPS29-207ENST00000549970 HPSE2Q8WWQ2 592 aa13.51□□□□□ -0.25
VPS29-207ENST00000549970 OR5P3Q8WZ94 311 aa13.51□□□□□ -0.25
VPS29-207ENST00000549970 UTP4Q969X6 686 aaKnown RBP13.51□□□□□ -0.25
VPS29-207ENST00000549970 RNF170Q96K19 258 aa13.51□□□□□ -0.25
VPS29-207ENST00000549970 TEAD3Q99594 435 aa13.51□□□□□ -0.25
VPS29-207ENST00000549970 YIPF3Q9GZM5 350 aa13.51□□□□□ -0.25
VPS29-207ENST00000549970 FGF23Q9GZV9 251 aaPredicted RBP13.51□□□□□ -0.25
VPS29-207ENST00000549970 SIRPDQ9H106 197 aa13.51□□□□□ -0.25
VPS29-207ENST00000549970 TLNRD1Q9H1K6 362 aa13.51□□□□□ -0.25
VPS29-207ENST00000549970 TRRAPQ9Y4A5 3859 aa13.51□□□□□ -0.25
VPS29-207ENST00000549970 CENPVL3A0A0U1RRI6 287 aa13.5□□□□□ -0.25
VPS29-207ENST00000549970 TMEM269A0A1B0GVZ9 245 aa13.5□□□□□ -0.25
VPS29-207ENST00000549970 TMEM210A6NLX4 147 aa13.5□□□□□ -0.25
VPS29-207ENST00000549970 M0R129 80 aa13.5□□□□□ -0.25
VPS29-207ENST00000549970 PRKYO43930 277 aa13.5□□□□□ -0.25
VPS29-207ENST00000549970 ECDO95905 644 aaPredicted RBP13.5□□□□□ -0.25
VPS29-207ENST00000549970 IKZF1Q13422 519 aa13.5□□□□□ -0.25
VPS29-207ENST00000549970 PTGES3Q15185 160 aaKnown RBP13.5□□□□□ -0.25
VPS29-207ENST00000549970 C16orf87Q6PH81 154 aa13.5□□□□□ -0.25
VPS29-207ENST00000549970 KCTD18Q6PI47 426 aaPredicted RBP13.5□□□□□ -0.25
VPS29-207ENST00000549970 COMMD2Q86X83 199 aa13.5□□□□□ -0.25
VPS29-207ENST00000549970 ZDHHC23Q8IYP9 409 aa13.5□□□□□ -0.25
VPS29-207ENST00000549970 OR5K1Q8NHB7 308 aa13.5□□□□□ -0.25
VPS29-207ENST00000549970 GATAD2BQ8WXI9 593 aa13.5□□□□□ -0.25
VPS29-207ENST00000549970 LHX4Q969G2 390 aa13.5□□□□□ -0.25
VPS29-207ENST00000549970 ZNF747Q9BV97 191 aa13.5□□□□□ -0.25
VPS29-207ENST00000549970 MROQ9BYG7 248 aa13.5□□□□□ -0.25
VPS29-207ENST00000549970 WDR13Q9H1Z4 485 aa13.5□□□□□ -0.25
VPS29-207ENST00000549970 UNKLQ9H9P5 680 aaKnown RBP13.5□□□□□ -0.25
VPS29-207ENST00000549970 ABCB9Q9NP78 766 aa13.5□□□□□ -0.25
VPS29-207ENST00000549970 SNTG1Q9NSN8 517 aa13.5□□□□□ -0.25
VPS29-207ENST00000549970 FAM206AQ9NX38 181 aa13.5□□□□□ -0.25
VPS29-207ENST00000549970 DNAJB11Q9UBS4 358 aa13.5□□□□□ -0.25
VPS29-207ENST00000549970 RPUSD1Q9UJJ7 312 aaKnown RBP13.5□□□□□ -0.25
VPS29-207ENST00000549970 ZNF391Q9UJN7 358 aa13.5□□□□□ -0.25
VPS29-207ENST00000549970 COPS3Q9UNS2 423 aa13.5□□□□□ -0.25
VPS29-207ENST00000549970 PRR32B1ATL7 298 aa13.49□□□□□ -0.25
VPS29-207ENST00000549970 AKR7A2O43488 359 aa13.49□□□□□ -0.25
VPS29-207ENST00000549970 SPRY1O43609 319 aaPredicted RBP13.49□□□□□ -0.25
VPS29-207ENST00000549970 MITFO75030 526 aaPredicted RBP13.49□□□□□ -0.25
VPS29-207ENST00000549970 SELLP14151 372 aa13.49□□□□□ -0.25
VPS29-207ENST00000549970 ESRRGP62508 458 aa13.49□□□□□ -0.25
VPS29-207ENST00000549970 BNIP1Q12981 228 aa13.49□□□□□ -0.25
VPS29-207ENST00000549970 PDCD1Q15116 288 aa13.49□□□□□ -0.25
VPS29-207ENST00000549970 STUMQ69YW2 141 aa13.49□□□□□ -0.25
VPS29-207ENST00000549970 BCDIN3DQ7Z5W3 292 aaKnown RBP13.49□□□□□ -0.25
VPS29-207ENST00000549970 PDZD9Q8IXQ8 264 aa13.49□□□□□ -0.25
VPS29-207ENST00000549970 SCCPDHQ8NBX0 429 aa13.49□□□□□ -0.25
VPS29-207ENST00000549970 OR10Z1Q8NGY1 313 aa13.49□□□□□ -0.25
VPS29-207ENST00000549970 C12orf43Q96C57 262 aaKnown RBP13.49□□□□□ -0.25
VPS29-207ENST00000549970 HIST1H2AAQ96QV6 131 aa13.49□□□□□ -0.25
VPS29-207ENST00000549970 PRRG3Q9BZD7 231 aa13.49□□□□□ -0.25
VPS29-207ENST00000549970 PBOV1Q9GZY1 135 aa13.49□□□□□ -0.25
VPS29-207ENST00000549970 PRDM13Q9H4Q3 707 aa13.49□□□□□ -0.25
VPS29-207ENST00000549970 CNTD2Q9H8S5 307 aa13.49□□□□□ -0.25
VPS29-207ENST00000549970 KRT84Q9NSB2 600 aa13.49□□□□□ -0.25
VPS29-207ENST00000549970 HAO2Q9NYQ3 351 aa13.49□□□□□ -0.25
VPS29-207ENST00000549970 ONECUT1Q9UBC0 465 aa13.49□□□□□ -0.25
VPS29-207ENST00000549970 IKZF2Q9UKS7 526 aa13.49□□□□□ -0.25
VPS29-207ENST00000549970 IGHV1-69DA0A0B4J2H0 117 aa13.48□□□□□ -0.25
VPS29-207ENST00000549970 A0A0U1RQV5 110 aa13.48□□□□□ -0.25
VPS29-207ENST00000549970 ZNF816-ZNF321PA0A0X1KG74 233 aa13.48□□□□□ -0.25
VPS29-207ENST00000549970 NDUFB3O43676 98 aa13.48□□□□□ -0.25
VPS29-207ENST00000549970 IGHV1-69P01742 117 aa13.48□□□□□ -0.25
VPS29-207ENST00000549970 TFF1P04155 84 aa13.48□□□□□ -0.25
VPS29-207ENST00000549970 AMY2BP19961 511 aa13.48□□□□□ -0.25
VPS29-207ENST00000549970 OMGP23515 440 aa13.48□□□□□ -0.25
VPS29-207ENST00000549970 MAP2K3P46734 347 aa13.48□□□□□ -0.25
VPS29-207ENST00000549970 GPM6AP51674 278 aa13.48□□□□□ -0.25
VPS29-207ENST00000549970 IL13RA1P78552 427 aa13.48□□□□□ -0.25
VPS29-207ENST00000549970 C11orf91Q3C1V1 193 aa13.48□□□□□ -0.25
VPS29-207ENST00000549970 DMRTC1Q5HYR2 192 aa13.48□□□□□ -0.25
VPS29-207ENST00000549970 CEP78Q5JTW2 689 aa13.48□□□□□ -0.25
VPS29-207ENST00000549970 DEGS2Q6QHC5 323 aa13.48□□□□□ -0.25
VPS29-207ENST00000549970 SHISA2Q6UWI4 295 aa13.48□□□□□ -0.25
VPS29-207ENST00000549970 Q6YL49 198 aa13.48□□□□□ -0.25
VPS29-207ENST00000549970 FAM71F1Q96KD3 344 aaPredicted RBP13.48□□□□□ -0.25
VPS29-207ENST00000549970 OR8B4Q96RC9 309 aa13.48□□□□□ -0.25
VPS29-207ENST00000549970 CNN2Q99439 309 aaKnown RBP13.48□□□□□ -0.25
VPS29-207ENST00000549970 NOX4Q9NPH5 578 aa13.48□□□□□ -0.25
VPS29-207ENST00000549970 ACOXLQ9NUZ1 547 aa13.48□□□□□ -0.25
VPS29-207ENST00000549970 TMEM14AQ9Y6G1 99 aa13.48□□□□□ -0.25
VPS29-207ENST00000549970 NKX6-3A6NJ46 265 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms