RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 BOD1Q96IK1 185 aa4.41□□□□□ -1.7
CLIP1-217ENST00000543205 SNX18Q96RF0 628 aa4.41□□□□□ -1.7
CLIP1-217ENST00000543205 C1QTNF6Q9BXI9 259 aa4.41□□□□□ -1.7
CLIP1-217ENST00000543205 PRRG3Q9BZD7 231 aa4.41□□□□□ -1.7
CLIP1-217ENST00000543205 DCLRE1BQ9H816 532 aa4.41□□□□□ -1.7
CLIP1-217ENST00000543205 RNF121Q9H920 327 aa4.41□□□□□ -1.7
CLIP1-217ENST00000543205 MOV10Q9HCE1 1003 aaKnown RBP4.41□□□□□ -1.7
CLIP1-217ENST00000543205 TREM1Q9NP99 234 aa4.41□□□□□ -1.7
CLIP1-217ENST00000543205 SLC25A15Q9Y619 301 aa4.41□□□□□ -1.7
CLIP1-217ENST00000543205 CEPT1Q9Y6K0 416 aa4.41□□□□□ -1.7
CLIP1-217ENST00000543205 ZFHX3Q15911 3703 aa4.41□□□□□ -1.7
CLIP1-217ENST00000543205 CACNA1DQ01668 2161 aa4.41□□□□□ -1.7
CLIP1-217ENST00000543205 MEX3AA1L020 520 aaKnown RBP4.4□□□□□ -1.7
CLIP1-217ENST00000543205 A6NNC1 897 aa4.4□□□□□ -1.7
CLIP1-217ENST00000543205 B5MCH6 92 aa4.4□□□□□ -1.7
CLIP1-217ENST00000543205 M0R1B8 84 aa4.4□□□□□ -1.7
CLIP1-217ENST00000543205 MGRN1O60291 552 aa4.4□□□□□ -1.7
CLIP1-217ENST00000543205 CLPXO76031 633 aa4.4□□□□□ -1.7
CLIP1-217ENST00000543205 UBL3O95164 117 aa4.4□□□□□ -1.7
CLIP1-217ENST00000543205 RAB36O95755 333 aa4.4□□□□□ -1.7
CLIP1-217ENST00000543205 HLA-DQA2P01906 255 aa4.4□□□□□ -1.7
CLIP1-217ENST00000543205 ALPLP05186 524 aa4.4□□□□□ -1.7
CLIP1-217ENST00000543205 HOXB5P09067 269 aa4.4□□□□□ -1.7
CLIP1-217ENST00000543205 VPREB1P12018 145 aa4.4□□□□□ -1.7
CLIP1-217ENST00000543205 CTLA4P16410 223 aa4.4□□□□□ -1.7
CLIP1-217ENST00000543205 CRYGSP22914 178 aa4.4□□□□□ -1.7
CLIP1-217ENST00000543205 MPZP25189 248 aa4.4□□□□□ -1.7
CLIP1-217ENST00000543205 LAP3P28838 519 aa4.4□□□□□ -1.7
CLIP1-217ENST00000543205 ZNF83P51522 516 aa4.4□□□□□ -1.7
CLIP1-217ENST00000543205 ZNF133P52736 654 aaPredicted RBP4.4□□□□□ -1.7
CLIP1-217ENST00000543205 TUBA1BP68363 451 aa4.4□□□□□ -1.7
CLIP1-217ENST00000543205 TUBA4AP68366 448 aa4.4□□□□□ -1.7
CLIP1-217ENST00000543205 MRPS34P82930 218 aaKnown RBP4.4□□□□□ -1.7
CLIP1-217ENST00000543205 GK2Q14410 553 aaPredicted RBP4.4□□□□□ -1.7
CLIP1-217ENST00000543205 DAZAP2Q15038 168 aaPredicted RBP4.4□□□□□ -1.7
CLIP1-217ENST00000543205 PTGES3Q15185 160 aaKnown RBP4.4□□□□□ -1.7
CLIP1-217ENST00000543205 ETFDHQ16134 617 aa4.4□□□□□ -1.7
CLIP1-217ENST00000543205 GSG1Q2KHT4 349 aa4.4□□□□□ -1.7
CLIP1-217ENST00000543205 SLC36A2Q495M3 483 aa4.4□□□□□ -1.7
CLIP1-217ENST00000543205 PDLIM3Q53GG5 364 aaPredicted RBP4.4□□□□□ -1.7
CLIP1-217ENST00000543205 BEX5Q5H9J7 111 aa4.4□□□□□ -1.7
CLIP1-217ENST00000543205 FAM76BQ5HYJ3 339 aa4.4□□□□□ -1.7
CLIP1-217ENST00000543205 TMEM236Q5W0B7 351 aa4.4□□□□□ -1.7
CLIP1-217ENST00000543205 ACSM5Q6NUN0 579 aa4.4□□□□□ -1.7
CLIP1-217ENST00000543205 TMEM53Q6P2H8 277 aa4.4□□□□□ -1.7
CLIP1-217ENST00000543205 B3GLCTQ6Y288 498 aa4.4□□□□□ -1.7
CLIP1-217ENST00000543205 ZNF704Q6ZNC4 412 aaPredicted RBP4.4□□□□□ -1.7
CLIP1-217ENST00000543205 TUBA1AQ71U36 451 aa4.4□□□□□ -1.7
CLIP1-217ENST00000543205 SLC16A14Q7RTX9 510 aa4.4□□□□□ -1.7
CLIP1-217ENST00000543205 DPPA2Q7Z7J5 298 aa4.4□□□□□ -1.7
CLIP1-217ENST00000543205 SKA3Q8IX90 412 aa4.4□□□□□ -1.7
CLIP1-217ENST00000543205 CMTM4Q8IZR5 234 aa4.4□□□□□ -1.7
CLIP1-217ENST00000543205 C1orf87Q8N0U7 546 aa4.4□□□□□ -1.7
CLIP1-217ENST00000543205 CADM3Q8N126 398 aa4.4□□□□□ -1.7
CLIP1-217ENST00000543205 OR6V1Q8N148 313 aa4.4□□□□□ -1.7
CLIP1-217ENST00000543205 LRRC18Q8N456 261 aa4.4□□□□□ -1.7
CLIP1-217ENST00000543205 BOLLQ8N9W6 283 aaKnown RBP4.4□□□□□ -1.7
CLIP1-217ENST00000543205 CYB561A3Q8NBI2 242 aa4.4□□□□□ -1.7
CLIP1-217ENST00000543205 NPEPL1Q8NDH3 523 aa4.4□□□□□ -1.7
CLIP1-217ENST00000543205 PROKR2Q8NFJ6 384 aa4.4□□□□□ -1.7
CLIP1-217ENST00000543205 OR2T4Q8NH00 348 aa4.4□□□□□ -1.7
CLIP1-217ENST00000543205 OR4A16Q8NH70 328 aa4.4□□□□□ -1.7
CLIP1-217ENST00000543205 TFAP2CQ92754 450 aa4.4□□□□□ -1.7
CLIP1-217ENST00000543205 PIK3IP1Q96FE7 263 aa4.4□□□□□ -1.7
CLIP1-217ENST00000543205 FOXN4Q96NZ1 517 aa4.4□□□□□ -1.7
CLIP1-217ENST00000543205 MS4A10Q96PG2 267 aa4.4□□□□□ -1.7
CLIP1-217ENST00000543205 SLC38A2Q96QD8 506 aa4.4□□□□□ -1.7
CLIP1-217ENST00000543205 SH3GL3Q99963 347 aa4.4□□□□□ -1.7
CLIP1-217ENST00000543205 ESRP2Q9H6T0 727 aaKnown RBP4.4□□□□□ -1.7
CLIP1-217ENST00000543205 SIAEQ9HAT2 523 aa4.4□□□□□ -1.7
CLIP1-217ENST00000543205 SLC25A19Q9HC21 320 aa4.4□□□□□ -1.7
CLIP1-217ENST00000543205 CCNB1IP1Q9NPC3 277 aa4.4□□□□□ -1.7
CLIP1-217ENST00000543205 CMC2Q9NRP2 79 aa4.4□□□□□ -1.7
CLIP1-217ENST00000543205 TVP23BQ9NYZ1 205 aa4.4□□□□□ -1.7
CLIP1-217ENST00000543205 USE1Q9NZ43 259 aa4.4□□□□□ -1.7
CLIP1-217ENST00000543205 B9D1Q9UPM9 204 aa4.4□□□□□ -1.7
CLIP1-217ENST00000543205 UGT2A1Q9Y4X1 527 aa4.4□□□□□ -1.7
CLIP1-217ENST00000543205 FKBP7Q9Y680 259 aa4.4□□□□□ -1.7
CLIP1-217ENST00000543205 HCFC1P51610 2035 aa4.4□□□□□ -1.71
CLIP1-217ENST00000543205 A0A0A0MQY5 61 aa4.39□□□□□ -1.71
CLIP1-217ENST00000543205 PRR23D1E9PI22 279 aaPredicted RBP4.39□□□□□ -1.71
CLIP1-217ENST00000543205 SURF4O15260 269 aa4.39□□□□□ -1.71
CLIP1-217ENST00000543205 HLA-HP01893 362 aa4.39□□□□□ -1.71
CLIP1-217ENST00000543205 PRR23D2P0DMB1 279 aaPredicted RBP4.39□□□□□ -1.71
CLIP1-217ENST00000543205 SPP1P10451 314 aa4.39□□□□□ -1.71
CLIP1-217ENST00000543205 CBR1P16152 277 aa4.39□□□□□ -1.71
CLIP1-217ENST00000543205 MSR1P21757 451 aa4.39□□□□□ -1.71
CLIP1-217ENST00000543205 SSTR2P30874 369 aa4.39□□□□□ -1.71
CLIP1-217ENST00000543205 ARR3P36575 388 aa4.39□□□□□ -1.71
CLIP1-217ENST00000543205 LIPAP38571 399 aa4.39□□□□□ -1.71
CLIP1-217ENST00000543205 CHN2P52757 468 aa4.39□□□□□ -1.71
CLIP1-217ENST00000543205 SLC25A1P53007 311 aa4.39□□□□□ -1.71
CLIP1-217ENST00000543205 PCBD1P61457 104 aa4.39□□□□□ -1.71
CLIP1-217ENST00000543205 TLE4Q04727 773 aa4.39□□□□□ -1.71
CLIP1-217ENST00000543205 GLO1Q04760 184 aa4.39□□□□□ -1.71
CLIP1-217ENST00000543205 SLC34A1Q06495 639 aa4.39□□□□□ -1.71
CLIP1-217ENST00000543205 CRMP1Q14194 572 aa4.39□□□□□ -1.71
CLIP1-217ENST00000543205 LRRC36Q1X8D7 754 aa4.39□□□□□ -1.71
CLIP1-217ENST00000543205 FAM27BQ5VT28 67 aa4.39□□□□□ -1.71
CLIP1-217ENST00000543205 LPCAT4Q643R3 524 aa4.39□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms