RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 G3V4G9 280 aa11.08□□□□□ -0.64
SS18-204ENST00000539244 GYPBP06028 91 aa11.08□□□□□ -0.64
SS18-204ENST00000539244 ANXA2P07355 339 aaKnown RBP11.08□□□□□ -0.64
SS18-204ENST00000539244 HSD11B1P28845 292 aa11.08□□□□□ -0.64
SS18-204ENST00000539244 GNALP38405 381 aa11.08□□□□□ -0.64
SS18-204ENST00000539244 DGUOKQ16854 277 aa11.08□□□□□ -0.64
SS18-204ENST00000539244 CRIP3Q6Q6R5 217 aa11.08□□□□□ -0.64
SS18-204ENST00000539244 PNKDQ8N490 385 aa11.08□□□□□ -0.64
SS18-204ENST00000539244 FTMTQ8N4E7 242 aa11.08□□□□□ -0.64
SS18-204ENST00000539244 OR9Q2Q8NGE9 314 aa11.08□□□□□ -0.64
SS18-204ENST00000539244 OR5T2Q8NGG2 359 aa11.08□□□□□ -0.64
SS18-204ENST00000539244 H1FXQ92522 213 aaKnown RBP11.08□□□□□ -0.64
SS18-204ENST00000539244 MED30Q96HR3 178 aa11.08□□□□□ -0.64
SS18-204ENST00000539244 NSMCE2Q96MF7 247 aa11.08□□□□□ -0.64
SS18-204ENST00000539244 MICU1Q9BPX6 476 aa11.08□□□□□ -0.64
SS18-204ENST00000539244 RTL8AQ9BWD3 113 aa11.08□□□□□ -0.64
SS18-204ENST00000539244 PAPOLGQ9BWT3 736 aaKnown RBP11.08□□□□□ -0.64
SS18-204ENST00000539244 WDR13Q9H1Z4 485 aa11.08□□□□□ -0.64
SS18-204ENST00000539244 OR10A2Q9H208 303 aa11.08□□□□□ -0.64
SS18-204ENST00000539244 RANBP3Q9H6Z4 567 aaPredicted RBP11.08□□□□□ -0.64
SS18-204ENST00000539244 ABCB9Q9NP78 766 aa11.08□□□□□ -0.64
SS18-204ENST00000539244 ZNF319Q9P2F9 582 aa11.08□□□□□ -0.64
SS18-204ENST00000539244 DNAJB11Q9UBS4 358 aa11.08□□□□□ -0.64
SS18-204ENST00000539244 SLC25A10Q9UBX3 287 aaPredicted RBP11.08□□□□□ -0.64
SS18-204ENST00000539244 RHBDD3Q9Y3P4 386 aa11.08□□□□□ -0.64
SS18-204ENST00000539244 MPC1Q9Y5U8 109 aa11.08□□□□□ -0.64
SS18-204ENST00000539244 A0A1W2PRD5 423 aa11.07□□□□□ -0.64
SS18-204ENST00000539244 A0A1W2PRF3 423 aa11.07□□□□□ -0.64
SS18-204ENST00000539244 A0A1W2PRM7 423 aa11.07□□□□□ -0.64
SS18-204ENST00000539244 ANXA2P2A6NMY6 339 aa11.07□□□□□ -0.64
SS18-204ENST00000539244 H3BUX3 64 aa11.07□□□□□ -0.64
SS18-204ENST00000539244 ARPC2O15144 300 aa11.07□□□□□ -0.64
SS18-204ENST00000539244 SIGLEC5O15389 551 aa11.07□□□□□ -0.64
SS18-204ENST00000539244 ACAA1P09110 424 aaPredicted RBP11.07□□□□□ -0.64
SS18-204ENST00000539244 CLUP10909 449 aa11.07□□□□□ -0.64
SS18-204ENST00000539244 DCTDP32321 178 aa11.07□□□□□ -0.64
SS18-204ENST00000539244 ZNF121P58317 390 aaPredicted RBP11.07□□□□□ -0.64
SS18-204ENST00000539244 EIF2B1Q14232 305 aaKnown RBP11.07□□□□□ -0.64
SS18-204ENST00000539244 AANATQ16613 207 aa11.07□□□□□ -0.64
SS18-204ENST00000539244 HCP5Q6MZN7 132 aa11.07□□□□□ -0.64
SS18-204ENST00000539244 FAM57BQ71RH2 274 aa11.07□□□□□ -0.64
SS18-204ENST00000539244 REC114Q7Z4M0 266 aa11.07□□□□□ -0.64
SS18-204ENST00000539244 OR6K6Q8NGW6 343 aa11.07□□□□□ -0.64
SS18-204ENST00000539244 PPP1R35Q8TAP8 253 aa11.07□□□□□ -0.64
SS18-204ENST00000539244 AJUBAQ96IF1 538 aa11.07□□□□□ -0.64
SS18-204ENST00000539244 ABHD6Q9BV23 337 aa11.07□□□□□ -0.64
SS18-204ENST00000539244 TSSK6Q9BXA6 273 aa11.07□□□□□ -0.64
SS18-204ENST00000539244 FAM234AQ9H0X4 552 aa11.07□□□□□ -0.64
SS18-204ENST00000539244 MEGF9Q9H1U4 602 aa11.07□□□□□ -0.64
SS18-204ENST00000539244 TBC1D23Q9NUY8 699 aa11.07□□□□□ -0.64
SS18-204ENST00000539244 ZNF391Q9UJN7 358 aa11.07□□□□□ -0.64
SS18-204ENST00000539244 DNAH3Q8TD57 4116 aa11.07□□□□□ -0.64
SS18-204ENST00000539244 NOTCH3Q9UM47 2321 aa11.06□□□□□ -0.64
SS18-204ENST00000539244 CST4P01036 141 aa11.06□□□□□ -0.64
SS18-204ENST00000539244 GASTP01350 101 aa11.06□□□□□ -0.64
SS18-204ENST00000539244 ACKR3P25106 362 aa11.06□□□□□ -0.64
SS18-204ENST00000539244 OPRL1P41146 370 aa11.06□□□□□ -0.64
SS18-204ENST00000539244 MAGEA2P43356 314 aa11.06□□□□□ -0.64
SS18-204ENST00000539244 BLMHQ13867 455 aa11.06□□□□□ -0.64
SS18-204ENST00000539244 SAMD4BQ5PRF9 694 aaKnown RBP11.06□□□□□ -0.64
SS18-204ENST00000539244 Q6ZPA2 131 aa11.06□□□□□ -0.64
SS18-204ENST00000539244 KRT74Q7RTS7 529 aa11.06□□□□□ -0.64
SS18-204ENST00000539244 OR2T33Q8NG76 320 aa11.06□□□□□ -0.64
SS18-204ENST00000539244 OR5D13Q8NGL4 314 aa11.06□□□□□ -0.64
SS18-204ENST00000539244 OR4Q3Q8NH05 313 aa11.06□□□□□ -0.64
SS18-204ENST00000539244 C17orf50Q8WW18 174 aa11.06□□□□□ -0.64
SS18-204ENST00000539244 HPSE2Q8WWQ2 592 aa11.06□□□□□ -0.64
SS18-204ENST00000539244 OR5P3Q8WZ94 311 aa11.06□□□□□ -0.64
SS18-204ENST00000539244 RPL3LQ92901 407 aaKnown RBP11.06□□□□□ -0.64
SS18-204ENST00000539244 DUS3LQ96G46 650 aaKnown RBP11.06□□□□□ -0.64
SS18-204ENST00000539244 INTS14Q96SY0 518 aa11.06□□□□□ -0.64
SS18-204ENST00000539244 SSX3Q99909 188 aa11.06□□□□□ -0.64
SS18-204ENST00000539244 FGF23Q9GZV9 251 aaPredicted RBP11.06□□□□□ -0.64
SS18-204ENST00000539244 RAB18Q9NP72 206 aa11.06□□□□□ -0.64
SS18-204ENST00000539244 SNTG1Q9NSN8 517 aa11.06□□□□□ -0.64
SS18-204ENST00000539244 NLKQ9UBE8 527 aa11.06□□□□□ -0.64
SS18-204ENST00000539244 SIGLEC9Q9Y336 463 aa11.06□□□□□ -0.64
SS18-204ENST00000539244 SF3B6Q9Y3B4 125 aaKnown RBP11.06□□□□□ -0.64
SS18-204ENST00000539244 TRBV23-1A0A0A0MS06 115 aa11.05□□□□□ -0.64
SS18-204ENST00000539244 A0A1W2PQ09 198 aa11.05□□□□□ -0.64
SS18-204ENST00000539244 TNFRSF11BO00300 401 aa11.05□□□□□ -0.64
SS18-204ENST00000539244 AKR7A2O43488 359 aa11.05□□□□□ -0.64
SS18-204ENST00000539244 IFNGP01579 166 aa11.05□□□□□ -0.64
SS18-204ENST00000539244 MSX2P35548 267 aaPredicted RBP11.05□□□□□ -0.64
SS18-204ENST00000539244 PRDX4Q13162 271 aa11.05□□□□□ -0.64
SS18-204ENST00000539244 LRRC75BQ2VPJ9 315 aa11.05□□□□□ -0.64
SS18-204ENST00000539244 HIST2H2BDQ6DRA6 164 aa11.05□□□□□ -0.64
SS18-204ENST00000539244 SHFQ7M4L6 423 aa11.05□□□□□ -0.64
SS18-204ENST00000539244 PGAM4Q8N0Y7 254 aa11.05□□□□□ -0.64
SS18-204ENST00000539244 DTX3Q8N9I9 347 aa11.05□□□□□ -0.64
SS18-204ENST00000539244 OR51G2Q8NGK0 314 aa11.05□□□□□ -0.64
SS18-204ENST00000539244 OR4C13Q8NGP0 309 aa11.05□□□□□ -0.64
SS18-204ENST00000539244 OR6N2Q8NGY6 317 aa11.05□□□□□ -0.64
SS18-204ENST00000539244 PPP1R14AQ96A00 147 aa11.05□□□□□ -0.64
SS18-204ENST00000539244 AMELYQ99218 206 aa11.05□□□□□ -0.64
SS18-204ENST00000539244 DGCR6LQ9BY27 220 aa11.05□□□□□ -0.64
SS18-204ENST00000539244 CMC2Q9NRP2 79 aa11.05□□□□□ -0.64
SS18-204ENST00000539244 ZNF222Q9UK12 451 aa11.05□□□□□ -0.64
SS18-204ENST00000539244 FOXJ3Q9UPW0 622 aa11.05□□□□□ -0.64
SS18-204ENST00000539244 MEGF11A6BM72 1044 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms