RNA–Protein interactions for RNA: ENST00000534082.1

CD44-237, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 564 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-237ENST00000534082 KRT4P19013 534 aa5.06□□□□□ -1.6
CD44-237ENST00000534082 NAA10P41227 235 aaPredicted RBP5.06□□□□□ -1.6
CD44-237ENST00000534082 INSL3P51460 131 aa5.06□□□□□ -1.6
CD44-237ENST00000534082 LINC00310P59036 64 aa5.06□□□□□ -1.6
CD44-237ENST00000534082 CTXN1P60606 82 aa5.06□□□□□ -1.6
CD44-237ENST00000534082 LSM6P62312 80 aaKnown RBP5.06□□□□□ -1.6
CD44-237ENST00000534082 MXRA7P84157 204 aa5.06□□□□□ -1.6
CD44-237ENST00000534082 CDK6Q00534 326 aa5.06□□□□□ -1.6
CD44-237ENST00000534082 SPIBQ01892 262 aa5.06□□□□□ -1.6
CD44-237ENST00000534082 FADDQ13158 208 aa5.06□□□□□ -1.6
CD44-237ENST00000534082 SEC23BQ15437 767 aa5.06□□□□□ -1.6
CD44-237ENST00000534082 RSPO1Q2MKA7 263 aaPredicted RBP5.06□□□□□ -1.6
CD44-237ENST00000534082 KRTAP27-1Q3LI81 207 aa5.06□□□□□ -1.6
CD44-237ENST00000534082 C6orf10Q5SRN2 563 aa5.06□□□□□ -1.6
CD44-237ENST00000534082 GCNT6Q5T4J0 391 aa5.06□□□□□ -1.6
CD44-237ENST00000534082 ZNF626Q68DY1 528 aa5.06□□□□□ -1.6
CD44-237ENST00000534082 RBM45Q8IUH3 476 aaKnown RBP5.06□□□□□ -1.6
CD44-237ENST00000534082 LNX2Q8N448 690 aa5.06□□□□□ -1.6
CD44-237ENST00000534082 SMYD1Q8NB12 490 aa5.06□□□□□ -1.6
CD44-237ENST00000534082 OR8S1Q8NH09 359 aa5.06□□□□□ -1.6
CD44-237ENST00000534082 ANGPTL6Q8NI99 470 aa5.06□□□□□ -1.6
CD44-237ENST00000534082 IFT81Q8WYA0 676 aa5.06□□□□□ -1.6
CD44-237ENST00000534082 RAB3IPQ96QF0 476 aaPredicted RBP5.06□□□□□ -1.6
CD44-237ENST00000534082 SLC25A33Q9BSK2 321 aa5.06□□□□□ -1.6
CD44-237ENST00000534082 WDR13Q9H1Z4 485 aa5.06□□□□□ -1.6
CD44-237ENST00000534082 USE1Q9NZ43 259 aa5.06□□□□□ -1.6
CD44-237ENST00000534082 VSX1Q9NZR4 365 aaPredicted RBP5.06□□□□□ -1.6
CD44-237ENST00000534082 RPS6KA6Q9UK32 745 aa5.06□□□□□ -1.6
CD44-237ENST00000534082 SORL1Q92673 2214 aa5.06□□□□□ -1.6
CD44-237ENST00000534082 hCG_2014768A0A024R1R8 64 aa5.05□□□□□ -1.6
CD44-237ENST00000534082 F5H5K5 113 aa5.05□□□□□ -1.6
CD44-237ENST00000534082 CLIC1O00299 241 aa5.05□□□□□ -1.6
CD44-237ENST00000534082 RGS13O14921 159 aa5.05□□□□□ -1.6
CD44-237ENST00000534082 PSPNO60542 156 aa5.05□□□□□ -1.6
CD44-237ENST00000534082 DEDDO75618 318 aa5.05□□□□□ -1.6
CD44-237ENST00000534082 SERPINB7O75635 380 aa5.05□□□□□ -1.6
CD44-237ENST00000534082 OR2F2O95006 317 aa5.05□□□□□ -1.6
CD44-237ENST00000534082 IL6P05231 212 aa5.05□□□□□ -1.6
CD44-237ENST00000534082 ACAA1P09110 424 aaPredicted RBP5.05□□□□□ -1.6
CD44-237ENST00000534082 IGHV4-30-4P0DP06 118 aa5.05□□□□□ -1.6
CD44-237ENST00000534082 GP9P14770 177 aa5.05□□□□□ -1.6
CD44-237ENST00000534082 SPNP16150 400 aa5.05□□□□□ -1.6
CD44-237ENST00000534082 CD24P25063 80 aa5.05□□□□□ -1.6
CD44-237ENST00000534082 SDHAP31040 664 aa5.05□□□□□ -1.6
CD44-237ENST00000534082 GABRA2P47869 451 aa5.05□□□□□ -1.6
CD44-237ENST00000534082 CAPZA1P52907 286 aa5.05□□□□□ -1.6
CD44-237ENST00000534082 RPL31P62899 125 aaKnown RBP5.05□□□□□ -1.6
CD44-237ENST00000534082 HIST1H3AP68431 136 aa5.05□□□□□ -1.6
CD44-237ENST00000534082 ZNF92Q03936 586 aa5.05□□□□□ -1.6
CD44-237ENST00000534082 DYNC1I2Q13409 638 aaKnown RBP5.05□□□□□ -1.6
CD44-237ENST00000534082 SCARB2Q14108 478 aa5.05□□□□□ -1.6
CD44-237ENST00000534082 SRSF7Q16629 238 aaKnown RBP eCLIP5.05□□□□□ -1.6
CD44-237ENST00000534082 HSP90B2PQ58FF3 399 aa5.05□□□□□ -1.6
CD44-237ENST00000534082 HIST2H3PS2Q5TEC6 136 aa5.05□□□□□ -1.6
CD44-237ENST00000534082 TMEM200BQ69YZ2 307 aa5.05□□□□□ -1.6
CD44-237ENST00000534082 ZNF770Q6IQ21 691 aaPredicted RBP5.05□□□□□ -1.6
CD44-237ENST00000534082 CORO6Q6QEF8 472 aa5.05□□□□□ -1.6
CD44-237ENST00000534082 CFAP77Q6ZQR2 320 aa5.05□□□□□ -1.6
CD44-237ENST00000534082 HIST2H3AQ71DI3 136 aa5.05□□□□□ -1.6
CD44-237ENST00000534082 ZNF572Q7Z3I7 529 aaPredicted RBP5.05□□□□□ -1.6
CD44-237ENST00000534082 ZSCAN2Q7Z7L9 614 aaPredicted RBP5.05□□□□□ -1.6
CD44-237ENST00000534082 DHDDSQ86SQ9 333 aa5.05□□□□□ -1.6
CD44-237ENST00000534082 NAA40Q86UY6 237 aa5.05□□□□□ -1.6
CD44-237ENST00000534082 GLB1L2Q8IW92 636 aa5.05□□□□□ -1.6
CD44-237ENST00000534082 ZNF781Q8N8C0 355 aa5.05□□□□□ -1.6
CD44-237ENST00000534082 ZNRF1Q8ND25 227 aa5.05□□□□□ -1.6
CD44-237ENST00000534082 GJC3Q8NFK1 279 aa5.05□□□□□ -1.6
CD44-237ENST00000534082 OR1M1Q8NGA1 313 aa5.05□□□□□ -1.6
CD44-237ENST00000534082 OR56B2PQ8NGI1 322 aa5.05□□□□□ -1.6
CD44-237ENST00000534082 OR4D11Q8NGI4 311 aa5.05□□□□□ -1.6
CD44-237ENST00000534082 OR13D1Q8NGV5 346 aa5.05□□□□□ -1.6
CD44-237ENST00000534082 OR2AE1Q8NHA4 323 aa5.05□□□□□ -1.6
CD44-237ENST00000534082 CHPT1Q8WUD6 406 aa5.05□□□□□ -1.6
CD44-237ENST00000534082 TMEM255BQ8WV15 326 aa5.05□□□□□ -1.6
CD44-237ENST00000534082 LIPHQ8WWY8 451 aa5.05□□□□□ -1.6
CD44-237ENST00000534082 NOL4LQ96MY1 436 aaPredicted RBP5.05□□□□□ -1.6
CD44-237ENST00000534082 CDRT15Q96T59 188 aa5.05□□□□□ -1.6
CD44-237ENST00000534082 RERGLQ9H628 205 aa5.05□□□□□ -1.6
CD44-237ENST00000534082 ISYNA1Q9NPH2 558 aa5.05□□□□□ -1.6
CD44-237ENST00000534082 LHFPL6Q9Y693 200 aa5.05□□□□□ -1.6
CD44-237ENST00000534082 MUC4Q99102 2169 aa5.05□□□□□ -1.6
CD44-237ENST00000534082 IGKV1D-17A0A075B6S4 117 aa5.04□□□□□ -1.6
CD44-237ENST00000534082 PRSS37A4D1T9 235 aa5.04□□□□□ -1.6
CD44-237ENST00000534082 OR2AT4A6NND4 320 aa5.04□□□□□ -1.6
CD44-237ENST00000534082 CDIPTO14735 213 aa5.04□□□□□ -1.6
CD44-237ENST00000534082 TIPRLO75663 272 aa5.04□□□□□ -1.6
CD44-237ENST00000534082 IGHV1-8P0DP01 117 aa5.04□□□□□ -1.6
CD44-237ENST00000534082 CD247P20963 164 aa5.04□□□□□ -1.6
CD44-237ENST00000534082 ANOS1P23352 680 aa5.04□□□□□ -1.6
CD44-237ENST00000534082 CNTFRP26992 372 aa5.04□□□□□ -1.6
CD44-237ENST00000534082 CASQ1P31415 396 aa5.04□□□□□ -1.6
CD44-237ENST00000534082 RBM34P42696 430 aaKnown RBP5.04□□□□□ -1.6
CD44-237ENST00000534082 MTNR1BP49286 362 aa5.04□□□□□ -1.6
CD44-237ENST00000534082 SLC35B1P78383 322 aa5.04□□□□□ -1.6
CD44-237ENST00000534082 TRAP1Q12931 704 aaKnown RBP5.04□□□□□ -1.6
CD44-237ENST00000534082 FHL3Q13643 280 aa5.04□□□□□ -1.6
CD44-237ENST00000534082 ZNF273Q14593 569 aa5.04□□□□□ -1.6
CD44-237ENST00000534082 KIR2DS1Q14954 304 aa5.04□□□□□ -1.6
CD44-237ENST00000534082 DUSP7Q16829 419 aa5.04□□□□□ -1.6
CD44-237ENST00000534082 SNAI3Q3KNW1 292 aa5.04□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 93.3 ms