RNA–Protein interactions for RNA: ENST00000533079.5

CAPN1-223, Transcript of calpain 1, human

TSL 3

Gene CAPN1, Length 878 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN1-223	ENST00000533079	DBP	Q10586	325 aa	Predicted RBP	10.21	□□□□□ -0.77
CAPN1-223	ENST00000533079	OR8B8	Q15620	311 aa		10.21	□□□□□ -0.77
CAPN1-223	ENST00000533079	CCDC92	Q53HC0	331 aa	Predicted RBP	10.21	□□□□□ -0.77
CAPN1-223	ENST00000533079	OXLD1	Q5BKU9	147 aa		10.21	□□□□□ -0.77
CAPN1-223	ENST00000533079	ZNF730	Q6ZMV8	503 aa		10.21	□□□□□ -0.77
CAPN1-223	ENST00000533079	COLCA1	Q6ZS62	124 aa		10.21	□□□□□ -0.77
CAPN1-223	ENST00000533079	GLB1L2	Q8IW92	636 aa		10.21	□□□□□ -0.77
CAPN1-223	ENST00000533079	ENTHD1	Q8IYW4	607 aa		10.21	□□□□□ -0.77
CAPN1-223	ENST00000533079	C19orf18	Q8NEA5	215 aa		10.21	□□□□□ -0.77
CAPN1-223	ENST00000533079	OR2T6	Q8NHC8	308 aa		10.21	□□□□□ -0.77
CAPN1-223	ENST00000533079	PHF21A	Q96BD5	680 aa		10.21	□□□□□ -0.77
CAPN1-223	ENST00000533079	NDEL1	Q9GZM8	345 aa		10.21	□□□□□ -0.77
CAPN1-223	ENST00000533079	PPA2	Q9H2U2	334 aa		10.21	□□□□□ -0.77
CAPN1-223	ENST00000533079	CNTD2	Q9H8S5	307 aa		10.21	□□□□□ -0.77
CAPN1-223	ENST00000533079	RAB18	Q9NP72	206 aa		10.21	□□□□□ -0.77
CAPN1-223	ENST00000533079	IL20	Q9NYY1	176 aa		10.21	□□□□□ -0.77
CAPN1-223	ENST00000533079	GRHPR	Q9UBQ7	328 aa		10.21	□□□□□ -0.77
CAPN1-223	ENST00000533079	TMEM5	Q9Y2B1	443 aa		10.21	□□□□□ -0.77
CAPN1-223	ENST00000533079	DOCK11	Q5JSL3	2073 aa		10.21	□□□□□ -0.78
CAPN1-223	ENST00000533079	PRSS37	A4D1T9	235 aa		10.2	□□□□□ -0.78
CAPN1-223	ENST00000533079		H7C1C5	153 aa		10.2	□□□□□ -0.78
CAPN1-223	ENST00000533079	ZNF701	M0R085	212 aa	Predicted RBP	10.2	□□□□□ -0.78
CAPN1-223	ENST00000533079	DVL1	O14640	695 aa		10.2	□□□□□ -0.78
CAPN1-223	ENST00000533079	NPFF	O15130	113 aa		10.2	□□□□□ -0.78
CAPN1-223	ENST00000533079	WBP4	O75554	376 aa	Known RBP	10.2	□□□□□ -0.78
CAPN1-223	ENST00000533079	DBH	P09172	617 aa		10.2	□□□□□ -0.78
CAPN1-223	ENST00000533079	IFI30	P13284	250 aa		10.2	□□□□□ -0.78
CAPN1-223	ENST00000533079	ATP6V1B1	P15313	513 aa		10.2	□□□□□ -0.78
CAPN1-223	ENST00000533079	LCN6	P62502	163 aa		10.2	□□□□□ -0.78
CAPN1-223	ENST00000533079	SLC35A2	P78381	396 aa		10.2	□□□□□ -0.78
CAPN1-223	ENST00000533079	EFNB1	P98172	346 aa		10.2	□□□□□ -0.78
CAPN1-223	ENST00000533079	CDK5	Q00535	292 aa		10.2	□□□□□ -0.78
CAPN1-223	ENST00000533079	PRKCD	Q05655	676 aa		10.2	□□□□□ -0.78
CAPN1-223	ENST00000533079	ZBED5	Q49AG3	693 aa		10.2	□□□□□ -0.78
CAPN1-223	ENST00000533079	MEST	Q5EB52	335 aa		10.2	□□□□□ -0.78
CAPN1-223	ENST00000533079	PRAMEF6	Q5VXH4	476 aa		10.2	□□□□□ -0.78
CAPN1-223	ENST00000533079	C12orf73	Q69YU5	71 aa		10.2	□□□□□ -0.78
CAPN1-223	ENST00000533079	SFRP4	Q6FHJ7	346 aa	Predicted RBP	10.2	□□□□□ -0.78
CAPN1-223	ENST00000533079	TMPRSS11F	Q6ZWK6	438 aa		10.2	□□□□□ -0.78
CAPN1-223	ENST00000533079	OAF	Q86UD1	273 aa		10.2	□□□□□ -0.78
CAPN1-223	ENST00000533079	KLHDC1	Q8N7A1	406 aa		10.2	□□□□□ -0.78
CAPN1-223	ENST00000533079	GJC3	Q8NFK1	279 aa		10.2	□□□□□ -0.78
CAPN1-223	ENST00000533079	OR4F17	Q8NGA8	305 aa		10.2	□□□□□ -0.78
CAPN1-223	ENST00000533079		Q96MT0	163 aa		10.2	□□□□□ -0.78
CAPN1-223	ENST00000533079	OR4F4	Q96R69	305 aa		10.2	□□□□□ -0.78
CAPN1-223	ENST00000533079	SLC25A19	Q9HC21	320 aa		10.2	□□□□□ -0.78
CAPN1-223	ENST00000533079	VCX3A	Q9NNX9	186 aa		10.2	□□□□□ -0.78
CAPN1-223	ENST00000533079	FKBP14	Q9NWM8	211 aa		10.2	□□□□□ -0.78
CAPN1-223	ENST00000533079	TRAV27	A0A087WT01	109 aa		10.19	□□□□□ -0.78
CAPN1-223	ENST00000533079	RER1	O15258	196 aa		10.19	□□□□□ -0.78
CAPN1-223	ENST00000533079	GMDS	O60547	372 aa		10.19	□□□□□ -0.78
CAPN1-223	ENST00000533079	CTLA4	P16410	223 aa		10.19	□□□□□ -0.78
CAPN1-223	ENST00000533079	HIST1H3A	P68431	136 aa		10.19	□□□□□ -0.78
CAPN1-223	ENST00000533079	EMX1	Q04741	257 aa	Predicted RBP	10.19	□□□□□ -0.78
CAPN1-223	ENST00000533079	ACSM1	Q08AH1	577 aa		10.19	□□□□□ -0.78
CAPN1-223	ENST00000533079	MALL	Q13021	153 aa		10.19	□□□□□ -0.78
CAPN1-223	ENST00000533079	GK2	Q14410	553 aa	Predicted RBP	10.19	□□□□□ -0.78
CAPN1-223	ENST00000533079	OR8G1	Q15617	311 aa		10.19	□□□□□ -0.78
CAPN1-223	ENST00000533079	MPPED2	Q15777	294 aa		10.19	□□□□□ -0.78
CAPN1-223	ENST00000533079	KCNMB1	Q16558	191 aa		10.19	□□□□□ -0.78
CAPN1-223	ENST00000533079	HIST2H3PS2	Q5TEC6	136 aa		10.19	□□□□□ -0.78
CAPN1-223	ENST00000533079	TEX36	Q5VZQ5	186 aa		10.19	□□□□□ -0.78
CAPN1-223	ENST00000533079	RPL13AP3	Q6NVV1	102 aa		10.19	□□□□□ -0.78
CAPN1-223	ENST00000533079	LIAT1	Q6ZQX7	453 aa		10.19	□□□□□ -0.78
CAPN1-223	ENST00000533079	HIST2H3A	Q71DI3	136 aa		10.19	□□□□□ -0.78
CAPN1-223	ENST00000533079	PRSS48	Q7RTY5	328 aa		10.19	□□□□□ -0.78
CAPN1-223	ENST00000533079	PDZD9	Q8IXQ8	264 aa		10.19	□□□□□ -0.78
CAPN1-223	ENST00000533079	SPART	Q8N0X7	666 aa		10.19	□□□□□ -0.78
CAPN1-223	ENST00000533079	LY6G5B	Q8NDX9	201 aa		10.19	□□□□□ -0.78
CAPN1-223	ENST00000533079	OR8J1	Q8NGP2	316 aa		10.19	□□□□□ -0.78
CAPN1-223	ENST00000533079	APH1B	Q8WW43	257 aa		10.19	□□□□□ -0.78
CAPN1-223	ENST00000533079	ST8SIA4	Q92187	359 aa		10.19	□□□□□ -0.78
CAPN1-223	ENST00000533079	WWC2-AS2	Q96NR7	200 aa		10.19	□□□□□ -0.78
CAPN1-223	ENST00000533079	ADAT1	Q9BUB4	502 aa	Known RBP	10.19	□□□□□ -0.78
CAPN1-223	ENST00000533079	FAM234A	Q9H0X4	552 aa		10.19	□□□□□ -0.78
CAPN1-223	ENST00000533079	UFSP2	Q9NUQ7	469 aa		10.19	□□□□□ -0.78
CAPN1-223	ENST00000533079	IMPAD1	Q9NX62	359 aa		10.19	□□□□□ -0.78
CAPN1-223	ENST00000533079	ONECUT1	Q9UBC0	465 aa		10.19	□□□□□ -0.78
CAPN1-223	ENST00000533079	POLR1D	Q9Y2S0	133 aa		10.19	□□□□□ -0.78
CAPN1-223	ENST00000533079	TENM3	Q9P273	2699 aa		10.18	□□□□□ -0.78
CAPN1-223	ENST00000533079	KHDRBS3	O75525	346 aa	Known RBP	10.18	□□□□□ -0.78
CAPN1-223	ENST00000533079	HMGN1	P05114	100 aa		10.18	□□□□□ -0.78
CAPN1-223	ENST00000533079	CD14	P08571	375 aa		10.18	□□□□□ -0.78
CAPN1-223	ENST00000533079	VSIG8	P0DPA2	414 aa		10.18	□□□□□ -0.78
CAPN1-223	ENST00000533079	SAA4	P35542	130 aa		10.18	□□□□□ -0.78
CAPN1-223	ENST00000533079	MZT1	Q08AG7	82 aa		10.18	□□□□□ -0.78
CAPN1-223	ENST00000533079	FHL1	Q13642	323 aa		10.18	□□□□□ -0.78
CAPN1-223	ENST00000533079	MEDAG	Q5VYS4	303 aa		10.18	□□□□□ -0.78
CAPN1-223	ENST00000533079	FOXB2	Q5VYV0	432 aa		10.18	□□□□□ -0.78
CAPN1-223	ENST00000533079	NCR3LG1	Q68D85	454 aa		10.18	□□□□□ -0.78
CAPN1-223	ENST00000533079	C1orf122	Q6ZSJ8	110 aa		10.18	□□□□□ -0.78
CAPN1-223	ENST00000533079	PGAP1	Q75T13	922 aa		10.18	□□□□□ -0.78
CAPN1-223	ENST00000533079	FAM122B	Q7Z309	247 aa		10.18	□□□□□ -0.78
CAPN1-223	ENST00000533079	SATL1	Q86VE3	508 aa		10.18	□□□□□ -0.78
CAPN1-223	ENST00000533079	NDUFA11	Q86Y39	141 aa		10.18	□□□□□ -0.78
CAPN1-223	ENST00000533079	FAM90A1	Q86YD7	464 aa		10.18	□□□□□ -0.78
CAPN1-223	ENST00000533079	NRM	Q8IXM6	262 aa		10.18	□□□□□ -0.78
CAPN1-223	ENST00000533079	BEND2	Q8NDZ0	799 aa		10.18	□□□□□ -0.78
CAPN1-223	ENST00000533079	BPIFB6	Q8NFQ5	453 aa		10.18	□□□□□ -0.78
CAPN1-223	ENST00000533079	OR51A7	Q8NH64	312 aa		10.18	□□□□□ -0.78

Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms