RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 ZC3HAV1LQ96H79 300 aaKnown RBP6.35□□□□□ -1.39
CD44-228ENST00000528455 REEP6Q96HR9 211 aa6.35□□□□□ -1.39
CD44-228ENST00000528455 SMURF1Q9HCE7 757 aa6.35□□□□□ -1.39
CD44-228ENST00000528455 GPR84Q9NQS5 396 aa6.35□□□□□ -1.39
CD44-228ENST00000528455 ZNF275Q9NSD4 429 aaPredicted RBP6.35□□□□□ -1.39
CD44-228ENST00000528455 STUB1Q9UNE7 303 aa6.35□□□□□ -1.39
CD44-228ENST00000528455 GTF2A1LQ9UNN4 478 aa6.35□□□□□ -1.39
CD44-228ENST00000528455 N6AMT1Q9Y5N5 214 aa6.35□□□□□ -1.39
CD44-228ENST00000528455 CEPT1Q9Y6K0 416 aa6.35□□□□□ -1.39
CD44-228ENST00000528455 V9GYS6 101 aa6.35□□□□□ -1.39
CD44-228ENST00000528455 CSMD1Q96PZ7 3565 aa6.34□□□□□ -1.39
CD44-228ENST00000528455 TRAV1-2A0A0B4J238 106 aa6.34□□□□□ -1.39
CD44-228ENST00000528455 A0A1B0GVI7 797 aa6.34□□□□□ -1.39
CD44-228ENST00000528455 P2RY10O00398 339 aa6.34□□□□□ -1.39
CD44-228ENST00000528455 GABRPO00591 440 aa6.34□□□□□ -1.39
CD44-228ENST00000528455 ABCD4O14678 606 aa6.34□□□□□ -1.39
CD44-228ENST00000528455 AIREO43918 545 aa6.34□□□□□ -1.39
CD44-228ENST00000528455 SMPD2O60906 423 aa6.34□□□□□ -1.39
CD44-228ENST00000528455 DHRS3O75911 302 aa6.34□□□□□ -1.39
CD44-228ENST00000528455 ARL6IP5O75915 188 aa6.34□□□□□ -1.39
CD44-228ENST00000528455 CD2P06729 351 aa6.34□□□□□ -1.39
CD44-228ENST00000528455 OCM2P0CE71 109 aa6.34□□□□□ -1.39
CD44-228ENST00000528455 SRMP19623 302 aa6.34□□□□□ -1.39
CD44-228ENST00000528455 CALCRP30988 508 aa6.34□□□□□ -1.39
CD44-228ENST00000528455 EVX1P49640 407 aa6.34□□□□□ -1.39
CD44-228ENST00000528455 PSMD7P51665 324 aa6.34□□□□□ -1.39
CD44-228ENST00000528455 SELENOVP59797 346 aa6.34□□□□□ -1.39
CD44-228ENST00000528455 FABP5Q01469 135 aa6.34□□□□□ -1.39
CD44-228ENST00000528455 RIPPLY1Q0D2K3 151 aa6.34□□□□□ -1.39
CD44-228ENST00000528455 GK2Q14410 553 aaPredicted RBP6.34□□□□□ -1.39
CD44-228ENST00000528455 ZMAT1Q5H9K5 638 aa6.34□□□□□ -1.39
CD44-228ENST00000528455 GLYATL3Q5SZD4 288 aa6.34□□□□□ -1.39
CD44-228ENST00000528455 GPR107Q5VW38 600 aa6.34□□□□□ -1.39
CD44-228ENST00000528455 MBNL2Q5VZF2 373 aaKnown RBP6.34□□□□□ -1.39
CD44-228ENST00000528455 ADAM5Q6NVV9 412 aa6.34□□□□□ -1.39
CD44-228ENST00000528455 ETV3LQ6ZN32 361 aa6.34□□□□□ -1.39
CD44-228ENST00000528455 PGAP1Q75T13 922 aa6.34□□□□□ -1.39
CD44-228ENST00000528455 CDH26Q8IXH8 852 aa6.34□□□□□ -1.39
CD44-228ENST00000528455 PARP16Q8N5Y8 322 aa6.34□□□□□ -1.39
CD44-228ENST00000528455 CSNK2A3Q8NEV1 391 aa6.34□□□□□ -1.39
CD44-228ENST00000528455 KLF14Q8TD94 323 aaPredicted RBP6.34□□□□□ -1.39
CD44-228ENST00000528455 RAB2BQ8WUD1 216 aa6.34□□□□□ -1.39
CD44-228ENST00000528455 TMEM203Q969S6 136 aa6.34□□□□□ -1.39
CD44-228ENST00000528455 LYZL4Q96KX0 146 aa6.34□□□□□ -1.39
CD44-228ENST00000528455 TMEM204Q9BSN7 226 aa6.34□□□□□ -1.39
CD44-228ENST00000528455 TMED9Q9BVK6 235 aa6.34□□□□□ -1.39
CD44-228ENST00000528455 FAM192AQ9GZU8 254 aa6.34□□□□□ -1.39
CD44-228ENST00000528455 ZNF442Q9H7R0 627 aa6.34□□□□□ -1.39
CD44-228ENST00000528455 TXNL4BQ9NX01 149 aaKnown RBP6.34□□□□□ -1.39
CD44-228ENST00000528455 KCNN3Q9UGI6 736 aa6.34□□□□□ -1.39
CD44-228ENST00000528455 FOXJ3Q9UPW0 622 aa6.34□□□□□ -1.39
CD44-228ENST00000528455 OTOGQ6ZRI0 2925 aa6.34□□□□□ -1.39
CD44-228ENST00000528455 CADP27708 2225 aa6.33□□□□□ -1.4
CD44-228ENST00000528455 TRBV5-7A0A0A0MS05 114 aa6.33□□□□□ -1.4
CD44-228ENST00000528455 PNMA8CA0A1B0GUJ8 204 aa6.33□□□□□ -1.4
CD44-228ENST00000528455 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP6.33□□□□□ -1.4
CD44-228ENST00000528455 C5orf63A6NC05 138 aa6.33□□□□□ -1.4
CD44-228ENST00000528455 DEFB108AA8MXU0 73 aa6.33□□□□□ -1.4
CD44-228ENST00000528455 TSPAN15O95858 294 aa6.33□□□□□ -1.4
CD44-228ENST00000528455 CST4P01036 141 aa6.33□□□□□ -1.4
CD44-228ENST00000528455 IGHV3-13P01766 116 aa6.33□□□□□ -1.4
CD44-228ENST00000528455 UCHL1P09936 223 aa6.33□□□□□ -1.4
CD44-228ENST00000528455 CD37P11049 281 aa6.33□□□□□ -1.4
CD44-228ENST00000528455 KITLGP21583 273 aa6.33□□□□□ -1.4
CD44-228ENST00000528455 GADD45AP24522 165 aa6.33□□□□□ -1.4
CD44-228ENST00000528455 GCH1P30793 250 aa6.33□□□□□ -1.4
CD44-228ENST00000528455 APOBEC3AP31941 199 aaPredicted RBP6.33□□□□□ -1.4
CD44-228ENST00000528455 FABP6P51161 128 aa6.33□□□□□ -1.4
CD44-228ENST00000528455 MECP2P51608 486 aaKnown RBP6.33□□□□□ -1.4
CD44-228ENST00000528455 RPS23P62266 143 aaKnown RBP6.33□□□□□ -1.4
CD44-228ENST00000528455 RPS25P62851 125 aaKnown RBP6.33□□□□□ -1.4
CD44-228ENST00000528455 TLE4Q04727 773 aa6.33□□□□□ -1.4
CD44-228ENST00000528455 PSG7Q13046 419 aa6.33□□□□□ -1.4
CD44-228ENST00000528455 SNTB1Q13884 538 aaKnown RBP6.33□□□□□ -1.4
CD44-228ENST00000528455 OR8B8Q15620 311 aa6.33□□□□□ -1.4
CD44-228ENST00000528455 CTF1Q16619 201 aa6.33□□□□□ -1.4
CD44-228ENST00000528455 ODF4Q2M2E3 257 aa6.33□□□□□ -1.4
CD44-228ENST00000528455 TMEM177Q53S58 311 aa6.33□□□□□ -1.4
CD44-228ENST00000528455 RGS7BPQ6MZT1 257 aaPredicted RBP6.33□□□□□ -1.4
CD44-228ENST00000528455 SLC22A25Q6T423 547 aa6.33□□□□□ -1.4
CD44-228ENST00000528455 UTS2BQ765I0 119 aa6.33□□□□□ -1.4
CD44-228ENST00000528455 MRPL21Q7Z2W9 205 aaKnown RBP6.33□□□□□ -1.4
CD44-228ENST00000528455 TPRA1Q86W33 373 aa6.33□□□□□ -1.4
CD44-228ENST00000528455 CLVS1Q8IUQ0 354 aaPredicted RBP6.33□□□□□ -1.4
CD44-228ENST00000528455 FTMTQ8N4E7 242 aa6.33□□□□□ -1.4
CD44-228ENST00000528455 SEMA6DQ8NFY4 1073 aa6.33□□□□□ -1.4
CD44-228ENST00000528455 OR51A4Q8NGJ6 313 aa6.33□□□□□ -1.4
CD44-228ENST00000528455 OR13C3Q8NGS6 347 aa6.33□□□□□ -1.4
CD44-228ENST00000528455 SYNPRQ8TBG9 265 aa6.33□□□□□ -1.4
CD44-228ENST00000528455 SLC25A40Q8TBP6 338 aa6.33□□□□□ -1.4
CD44-228ENST00000528455 TMEM171Q8WVE6 324 aa6.33□□□□□ -1.4
CD44-228ENST00000528455 PP6455Q8WZ26 134 aa6.33□□□□□ -1.4
CD44-228ENST00000528455 RGP1Q92546 391 aaPredicted RBP6.33□□□□□ -1.4
CD44-228ENST00000528455 PIGTQ969N2 578 aa6.33□□□□□ -1.4
CD44-228ENST00000528455 TMEM106AQ96A25 262 aa6.33□□□□□ -1.4
CD44-228ENST00000528455 FGGYQ96C11 551 aa6.33□□□□□ -1.4
CD44-228ENST00000528455 CMBLQ96DG6 245 aa6.33□□□□□ -1.4
CD44-228ENST00000528455 LURAP1Q96LR2 239 aa6.33□□□□□ -1.4
CD44-228ENST00000528455 KCTD7Q96MP8 289 aa6.33□□□□□ -1.4
CD44-228ENST00000528455 OR2J1Q9GZK6 312 aa6.33□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms