RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 IGHV4-39P01824 125 aa13.03□□□□□ -0.32
LSM1-203ENST00000520755 HLA-DPB1P04440 258 aa13.03□□□□□ -0.32
LSM1-203ENST00000520755 UCHL1P09936 223 aa13.03□□□□□ -0.32
LSM1-203ENST00000520755 PAX1P15863 534 aa13.03□□□□□ -0.32
LSM1-203ENST00000520755 ZNF81P51508 661 aa13.03□□□□□ -0.32
LSM1-203ENST00000520755 RIPPLY1Q0D2K3 151 aa13.03□□□□□ -0.32
LSM1-203ENST00000520755 ZBTB37Q5TC79 503 aa13.03□□□□□ -0.32
LSM1-203ENST00000520755 PARP16Q8N5Y8 322 aa13.03□□□□□ -0.32
LSM1-203ENST00000520755 CSNK2A3Q8NEV1 391 aa13.03□□□□□ -0.32
LSM1-203ENST00000520755 CHCHD6Q9BRQ6 235 aa13.03□□□□□ -0.32
LSM1-203ENST00000520755 CHST5Q9GZS9 411 aa13.03□□□□□ -0.32
LSM1-203ENST00000520755 RAB1BQ9H0U4 201 aa13.03□□□□□ -0.32
LSM1-203ENST00000520755 RNF167Q9H6Y7 350 aa13.03□□□□□ -0.32
LSM1-203ENST00000520755 MSL2Q9HCI7 577 aa13.03□□□□□ -0.32
LSM1-203ENST00000520755 NOX4Q9NPH5 578 aa13.03□□□□□ -0.32
LSM1-203ENST00000520755 CYSLTR2Q9NS75 346 aa13.03□□□□□ -0.32
LSM1-203ENST00000520755 TAS2R4Q9NYW5 299 aa13.03□□□□□ -0.32
LSM1-203ENST00000520755 TRAV8-7A0A075B6U6 113 aa13.02□□□□□ -0.33
LSM1-203ENST00000520755 IGKV1-9A0A0C4DH69 117 aa13.02□□□□□ -0.33
LSM1-203ENST00000520755 ANKRD61A6NGH8 418 aa13.02□□□□□ -0.33
LSM1-203ENST00000520755 SPRY3O43610 288 aa13.02□□□□□ -0.33
LSM1-203ENST00000520755 GABARAPO95166 117 aa13.02□□□□□ -0.33
LSM1-203ENST00000520755 CST4P01036 141 aa13.02□□□□□ -0.33
LSM1-203ENST00000520755 ERCC1P07992 297 aaPredicted RBP13.02□□□□□ -0.33
LSM1-203ENST00000520755 SELEP16581 610 aa13.02□□□□□ -0.33
LSM1-203ENST00000520755 ZNF12P17014 697 aa13.02□□□□□ -0.33
LSM1-203ENST00000520755 FSTP19883 344 aa13.02□□□□□ -0.33
LSM1-203ENST00000520755 GALP22466 123 aa13.02□□□□□ -0.33
LSM1-203ENST00000520755 TGFBR1P36897 503 aa13.02□□□□□ -0.33
LSM1-203ENST00000520755 DDOSTP39656 456 aa13.02□□□□□ -0.33
LSM1-203ENST00000520755 DMRTC1Q5HYR2 192 aa13.02□□□□□ -0.33
LSM1-203ENST00000520755 GPR107Q5VW38 600 aa13.02□□□□□ -0.33
LSM1-203ENST00000520755 ZNF529Q6P280 563 aa13.02□□□□□ -0.33
LSM1-203ENST00000520755 CEACAM19Q7Z692 300 aa13.02□□□□□ -0.33
LSM1-203ENST00000520755 LRRC75A-AS1Q8N1F1 130 aa13.02□□□□□ -0.33
LSM1-203ENST00000520755 OR8G5Q8NG78 346 aa13.02□□□□□ -0.33
LSM1-203ENST00000520755 OR51A2Q8NGJ7 313 aa13.02□□□□□ -0.33
LSM1-203ENST00000520755 HPSE2Q8WWQ2 592 aa13.02□□□□□ -0.33
LSM1-203ENST00000520755 C10orf35Q96D05 121 aa13.02□□□□□ -0.33
LSM1-203ENST00000520755 FOXC2Q99958 501 aa13.02□□□□□ -0.33
LSM1-203ENST00000520755 SLC30A2Q9BRI3 323 aa13.02□□□□□ -0.33
LSM1-203ENST00000520755 CENPOQ9BU64 300 aa13.02□□□□□ -0.33
LSM1-203ENST00000520755 PAPOLGQ9BWT3 736 aaKnown RBP13.02□□□□□ -0.33
LSM1-203ENST00000520755 RBM38Q9H0Z9 239 aaKnown RBP13.02□□□□□ -0.33
LSM1-203ENST00000520755 PLEKHA1Q9HB21 404 aa13.02□□□□□ -0.33
LSM1-203ENST00000520755 GPR173Q9NS66 373 aa13.02□□□□□ -0.33
LSM1-203ENST00000520755 TXNL4BQ9NX01 149 aaKnown RBP13.02□□□□□ -0.33
LSM1-203ENST00000520755 MRPL15Q9P015 296 aaKnown RBP13.02□□□□□ -0.33
LSM1-203ENST00000520755 CGGBP1Q9UFW8 167 aaPredicted RBP13.02□□□□□ -0.33
LSM1-203ENST00000520755 ENPP5Q9UJA9 477 aa13.02□□□□□ -0.33
LSM1-203ENST00000520755 ARID1AO14497 2285 aa13.02□□□□□ -0.33
LSM1-203ENST00000520755 C17orf100A8MU93 164 aa13.01□□□□□ -0.33
LSM1-203ENST00000520755 H0YL77 283 aa13.01□□□□□ -0.33
LSM1-203ENST00000520755 SSX4O60224 188 aa13.01□□□□□ -0.33
LSM1-203ENST00000520755 GATBO75879 557 aaKnown RBP13.01□□□□□ -0.33
LSM1-203ENST00000520755 LY6HO94772 140 aa13.01□□□□□ -0.33
LSM1-203ENST00000520755 SERPINA3P01011 423 aa13.01□□□□□ -0.33
LSM1-203ENST00000520755 ZNF20P17024 532 aa13.01□□□□□ -0.33
LSM1-203ENST00000520755 IGFBP3P17936 291 aaPredicted RBP13.01□□□□□ -0.33
LSM1-203ENST00000520755 CA6P23280 308 aa13.01□□□□□ -0.33
LSM1-203ENST00000520755 FGF9P31371 208 aaPredicted RBP13.01□□□□□ -0.33
LSM1-203ENST00000520755 PRDX4Q13162 271 aa13.01□□□□□ -0.33
LSM1-203ENST00000520755 UBE2V2Q15819 145 aa13.01□□□□□ -0.33
LSM1-203ENST00000520755 C22orf42Q6IC83 251 aa13.01□□□□□ -0.33
LSM1-203ENST00000520755 ANKRD13BQ86YJ7 626 aa13.01□□□□□ -0.33
LSM1-203ENST00000520755 OR13C9Q8NGT0 318 aa13.01□□□□□ -0.33
LSM1-203ENST00000520755 ITFG2Q969R8 447 aa13.01□□□□□ -0.33
LSM1-203ENST00000520755 ITPKCQ96DU7 683 aa13.01□□□□□ -0.33
LSM1-203ENST00000520755 EXOSC4Q9NPD3 245 aaKnown RBP13.01□□□□□ -0.33
LSM1-203ENST00000520755 NAV2Q8IVL1 2488 aa13.01□□□□□ -0.33
LSM1-203ENST00000520755 DYSFO75923 2080 aa13□□□□□ -0.33
LSM1-203ENST00000520755 LOC100506127A0A0U1RQW1 187 aa13□□□□□ -0.33
LSM1-203ENST00000520755 ZNF850A8MQ14 1090 aa13□□□□□ -0.33
LSM1-203ENST00000520755 TPD52L2O43399 206 aaKnown RBP13□□□□□ -0.33
LSM1-203ENST00000520755 AIREO43918 545 aa13□□□□□ -0.33
LSM1-203ENST00000520755 GMDSO60547 372 aa13□□□□□ -0.33
LSM1-203ENST00000520755 IGHV1-46P01743 117 aa13□□□□□ -0.33
LSM1-203ENST00000520755 CD2P06729 351 aa13□□□□□ -0.33
LSM1-203ENST00000520755 MAPK3P27361 379 aaPredicted RBP13□□□□□ -0.33
LSM1-203ENST00000520755 EFNA4P52798 201 aa13□□□□□ -0.33
LSM1-203ENST00000520755 CTF1Q16619 201 aa13□□□□□ -0.33
LSM1-203ENST00000520755 CEP78Q5JTW2 689 aa13□□□□□ -0.33
LSM1-203ENST00000520755 Q5PR19 223 aa13□□□□□ -0.33
LSM1-203ENST00000520755 CLVS2Q5SYC1 327 aa13□□□□□ -0.33
LSM1-203ENST00000520755 CRIP3Q6Q6R5 217 aa13□□□□□ -0.33
LSM1-203ENST00000520755 UTS2BQ765I0 119 aa13□□□□□ -0.33
LSM1-203ENST00000520755 RNF144BQ7Z419 303 aa13□□□□□ -0.33
LSM1-203ENST00000520755 CLVS1Q8IUQ0 354 aaPredicted RBP13□□□□□ -0.33
LSM1-203ENST00000520755 OR2Z1Q8NG97 314 aa13□□□□□ -0.33
LSM1-203ENST00000520755 OR10AD1Q8NGE0 317 aa13□□□□□ -0.33
LSM1-203ENST00000520755 NEU4Q8WWR8 484 aaPredicted RBP13□□□□□ -0.33
LSM1-203ENST00000520755 PP6455Q8WZ26 134 aa13□□□□□ -0.33
LSM1-203ENST00000520755 PIGCQ92535 297 aa13□□□□□ -0.33
LSM1-203ENST00000520755 THRSPQ92748 146 aa13□□□□□ -0.33
LSM1-203ENST00000520755 ADAT1Q9BUB4 502 aaKnown RBP13□□□□□ -0.33
LSM1-203ENST00000520755 BARX1Q9HBU1 254 aaPredicted RBP13□□□□□ -0.33
LSM1-203ENST00000520755 CEPT1Q9Y6K0 416 aa13□□□□□ -0.33
LSM1-203ENST00000520755 NOTCH2Q04721 2471 aa12.99□□□□□ -0.33
LSM1-203ENST00000520755 ANKRD30BLA7E2S9 258 aa12.99□□□□□ -0.33
LSM1-203ENST00000520755 NCR1O76036 304 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms