RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 SEMG1P04279 462 aa11.33□□□□□ -0.6
USP53-209ENST00000514665 IAPPP10997 89 aa11.33□□□□□ -0.6
USP53-209ENST00000514665 GLRA1P23415 457 aa11.33□□□□□ -0.6
USP53-209ENST00000514665 OSR2Q8N2R0 312 aa11.33□□□□□ -0.6
USP53-209ENST00000514665 POC1BQ8TC44 478 aa11.33□□□□□ -0.6
USP53-209ENST00000514665 GPX8Q8TED1 209 aa11.33□□□□□ -0.6
USP53-209ENST00000514665 PCDHB10Q9UN67 800 aa11.33□□□□□ -0.6
USP53-209ENST00000514665 RPH3ALQ9UNE2 315 aa11.33□□□□□ -0.6
USP53-209ENST00000514665 DOPEY2Q9Y3R5 2298 aa11.33□□□□□ -0.6
USP53-209ENST00000514665 ANKRD20A5PA0PJZ0 165 aa11.33□□□□□ -0.6
USP53-209ENST00000514665 OR4C45A6NMZ5 311 aa11.33□□□□□ -0.6
USP53-209ENST00000514665 SERPINE3A8MV23 424 aa11.33□□□□□ -0.6
USP53-209ENST00000514665 TSTD3H0UI37 97 aa11.33□□□□□ -0.6
USP53-209ENST00000514665 SPINT2O43291 252 aa11.33□□□□□ -0.6
USP53-209ENST00000514665 HOXA1P49639 335 aaPredicted RBP11.33□□□□□ -0.6
USP53-209ENST00000514665 ASCL1P50553 236 aa11.33□□□□□ -0.6
USP53-209ENST00000514665 SIGIRRQ6IA17 410 aa11.33□□□□□ -0.6
USP53-209ENST00000514665 TRILQ7L0X0 811 aa11.33□□□□□ -0.6
USP53-209ENST00000514665 LSMEM1Q8N8F7 131 aa11.33□□□□□ -0.6
USP53-209ENST00000514665 TMPRSS13Q9BYE2 586 aa11.33□□□□□ -0.6
USP53-209ENST00000514665 PLEKHA2Q9HB19 425 aa11.33□□□□□ -0.6
USP53-209ENST00000514665 RNF150Q9ULK6 438 aa11.33□□□□□ -0.6
USP53-209ENST00000514665 PRELID3BQ9Y3B1 194 aa11.33□□□□□ -0.6
USP53-209ENST00000514665 MDC1Q14676 2089 aaKnown RBP11.32□□□□□ -0.6
USP53-209ENST00000514665 MEX3AA1L020 520 aaKnown RBP11.32□□□□□ -0.6
USP53-209ENST00000514665 PLPP3O14495 311 aa11.32□□□□□ -0.6
USP53-209ENST00000514665 ZNF250P15622 560 aa11.32□□□□□ -0.6
USP53-209ENST00000514665 SLC10A1Q14973 349 aa11.32□□□□□ -0.6
USP53-209ENST00000514665 CLEC12BQ2HXU8 276 aa11.32□□□□□ -0.6
USP53-209ENST00000514665 C1orf53Q5VUE5 145 aa11.32□□□□□ -0.6
USP53-209ENST00000514665 RPUSD3Q6P087 351 aaKnown RBP11.32□□□□□ -0.6
USP53-209ENST00000514665 LHFPL2Q6ZUX7 228 aa11.32□□□□□ -0.6
USP53-209ENST00000514665 C6orf201Q7Z4U5 140 aa11.32□□□□□ -0.6
USP53-209ENST00000514665 ATG4DQ86TL0 474 aaPredicted RBP11.32□□□□□ -0.6
USP53-209ENST00000514665 LFNGQ8NES3 379 aa11.32□□□□□ -0.6
USP53-209ENST00000514665 FOXB1Q99853 325 aa11.32□□□□□ -0.6
USP53-209ENST00000514665 PPP1R3EQ9H7J1 279 aa11.32□□□□□ -0.6
USP53-209ENST00000514665 ZNF275Q9NSD4 429 aaPredicted RBP11.32□□□□□ -0.6
USP53-209ENST00000514665 LOXL2Q9Y4K0 774 aa11.32□□□□□ -0.6
USP53-209ENST00000514665 A0A087WZY1 265 aa11.32□□□□□ -0.6
USP53-209ENST00000514665 IGHV1OR15-9A0A0B4J2B8 117 aa11.32□□□□□ -0.6
USP53-209ENST00000514665 CTXN2P0C2S0 81 aa11.32□□□□□ -0.6
USP53-209ENST00000514665 CT45A8P0DMV1 189 aa11.32□□□□□ -0.6
USP53-209ENST00000514665 CT45A9P0DMV2 189 aa11.32□□□□□ -0.6
USP53-209ENST00000514665 FABP6P51161 128 aa11.32□□□□□ -0.6
USP53-209ENST00000514665 OR8G1Q15617 311 aa11.32□□□□□ -0.6
USP53-209ENST00000514665 CT45A2Q5DJT8 189 aa11.32□□□□□ -0.6
USP53-209ENST00000514665 OR2W3Q7Z3T1 314 aa11.32□□□□□ -0.6
USP53-209ENST00000514665 THNSL2Q86YJ6 484 aa11.32□□□□□ -0.6
USP53-209ENST00000514665 MSI2Q96DH6 328 aaKnown RBP11.32□□□□□ -0.6
USP53-209ENST00000514665 LIN37Q96GY3 246 aaPredicted RBP11.32□□□□□ -0.6
USP53-209ENST00000514665 AP1S3Q96PC3 154 aa11.32□□□□□ -0.6
USP53-209ENST00000514665 NARFLQ9H6Q4 476 aa11.32□□□□□ -0.6
USP53-209ENST00000514665 B3GAT1Q9P2W7 334 aa11.32□□□□□ -0.6
USP53-209ENST00000514665 GHRLQ9UBU3 117 aa11.32□□□□□ -0.6
USP53-209ENST00000514665 ADAP1O75689 374 aa11.32□□□□□ -0.6
USP53-209ENST00000514665 OR2C1O95371 312 aa11.32□□□□□ -0.6
USP53-209ENST00000514665 HIST1H1DP16402 221 aaKnown RBP11.32□□□□□ -0.6
USP53-209ENST00000514665 SLC37A1P57057 533 aa11.32□□□□□ -0.6
USP53-209ENST00000514665 KCNIP4Q6PIL6 250 aa11.32□□□□□ -0.6
USP53-209ENST00000514665 DEGS2Q6QHC5 323 aa11.32□□□□□ -0.6
USP53-209ENST00000514665 OR11H7Q8NGC8 314 aa11.32□□□□□ -0.6
USP53-209ENST00000514665 ZPLD1Q8TCW7 415 aa11.32□□□□□ -0.6
USP53-209ENST00000514665 RXFP4Q8TDU9 374 aa11.32□□□□□ -0.6
USP53-209ENST00000514665 RTL8AQ9BWD3 113 aa11.32□□□□□ -0.6
USP53-209ENST00000514665 ENSAO43768 121 aaKnown RBP11.31□□□□□ -0.6
USP53-209ENST00000514665 HLA-HP01893 362 aa11.31□□□□□ -0.6
USP53-209ENST00000514665 HOXC4P09017 264 aaPredicted RBP11.31□□□□□ -0.6
USP53-209ENST00000514665 TMIGD3P0DMS9 266 aaPredicted RBP11.31□□□□□ -0.6
USP53-209ENST00000514665 ZNF626Q68DY1 528 aa11.31□□□□□ -0.6
USP53-209ENST00000514665 OR5AP2Q8NGF4 316 aa11.31□□□□□ -0.6
USP53-209ENST00000514665 MCHR2Q969V1 340 aa11.31□□□□□ -0.6
USP53-209ENST00000514665 INTS12Q96CB8 462 aaKnown RBP11.31□□□□□ -0.6
USP53-209ENST00000514665 UBL7Q96S82 380 aaPredicted RBP11.31□□□□□ -0.6
USP53-209ENST00000514665 FAAP24Q9BTP7 215 aa11.31□□□□□ -0.6
USP53-209ENST00000514665 LHX9Q9NQ69 397 aa11.31□□□□□ -0.6
USP53-209ENST00000514665 LRRC37AA6NMS7 1700 aa11.31□□□□□ -0.6
USP53-209ENST00000514665 LY75O60449 1722 aa11.31□□□□□ -0.6
USP53-209ENST00000514665 MED19A0JLT2 244 aaPredicted RBP11.31□□□□□ -0.6
USP53-209ENST00000514665 OR5H15A6NDH6 313 aa11.31□□□□□ -0.6
USP53-209ENST00000514665 C17orf112F2Z3M2 114 aa11.31□□□□□ -0.6
USP53-209ENST00000514665 H7C1Q1 480 aa11.31□□□□□ -0.6
USP53-209ENST00000514665 MT-ND4LP03901 98 aa11.31□□□□□ -0.6
USP53-209ENST00000514665 PTGFRP43088 359 aa11.31□□□□□ -0.6
USP53-209ENST00000514665 OR3A4PP47883 348 aa11.31□□□□□ -0.6
USP53-209ENST00000514665 PSMB3P49720 205 aa11.31□□□□□ -0.6
USP53-209ENST00000514665 OR8B8Q15620 311 aa11.31□□□□□ -0.6
USP53-209ENST00000514665 H2BFWTQ7Z2G1 175 aa11.31□□□□□ -0.6
USP53-209ENST00000514665 LHX4Q969G2 390 aa11.31□□□□□ -0.6
USP53-209ENST00000514665 OPA3Q9H6K4 179 aa11.31□□□□□ -0.6
USP53-209ENST00000514665 GPR179Q6PRD1 2367 aa11.31□□□□□ -0.6
USP53-209ENST00000514665 DEFA6Q01524 100 aa11.31□□□□□ -0.6
USP53-209ENST00000514665 FZD5Q13467 585 aa11.31□□□□□ -0.6
USP53-209ENST00000514665 ESPL1Q14674 2120 aa11.31□□□□□ -0.6
USP53-209ENST00000514665 PRAMEF5Q5TYX0 476 aa11.31□□□□□ -0.6
USP53-209ENST00000514665 PRAMEF6Q5VXH4 476 aa11.31□□□□□ -0.6
USP53-209ENST00000514665 SEZ6L2Q6UXD5 910 aa11.31□□□□□ -0.6
USP53-209ENST00000514665 PRSS42Q7Z5A4 293 aa11.31□□□□□ -0.6
USP53-209ENST00000514665 RFLNBQ8N5W9 214 aa11.31□□□□□ -0.6
USP53-209ENST00000514665 OR1F12Q8NHA8 337 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms