RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 J3QRE1 110 aa7.49□□□□□ -1.21
LIMCH1-216ENST00000512820 ANGPTL7O43827 346 aa7.49□□□□□ -1.21
LIMCH1-216ENST00000512820 GP1BAP07359 652 aa7.49□□□□□ -1.21
LIMCH1-216ENST00000512820 NME1P15531 152 aaKnown RBP7.49□□□□□ -1.21
LIMCH1-216ENST00000512820 CXCL12P48061 93 aa7.49□□□□□ -1.21
LIMCH1-216ENST00000512820 TFF2Q03403 129 aa7.49□□□□□ -1.21
LIMCH1-216ENST00000512820 SHBQ15464 509 aa7.49□□□□□ -1.21
LIMCH1-216ENST00000512820 TMEM268Q5VZI3 342 aa7.49□□□□□ -1.21
LIMCH1-216ENST00000512820 RPL7L1Q6DKI1 246 aaKnown RBP7.49□□□□□ -1.21
LIMCH1-216ENST00000512820 TMPPEQ6ZT21 453 aa7.49□□□□□ -1.21
LIMCH1-216ENST00000512820 RABEPKQ7Z6M1 372 aa7.49□□□□□ -1.21
LIMCH1-216ENST00000512820 OR51F2Q8NH61 342 aa7.49□□□□□ -1.21
LIMCH1-216ENST00000512820 ZNRF4Q8WWF5 429 aa7.49□□□□□ -1.21
LIMCH1-216ENST00000512820 ASB10Q8WXI3 467 aa7.49□□□□□ -1.21
LIMCH1-216ENST00000512820 ZNF845Q96IR2 970 aaPredicted RBP7.49□□□□□ -1.21
LIMCH1-216ENST00000512820 IGHV3-15A0A0B4J1V0 119 aa7.49□□□□□ -1.21
LIMCH1-216ENST00000512820 SOCS1O15524 211 aa7.49□□□□□ -1.21
LIMCH1-216ENST00000512820 VSIG8P0DPA2 414 aa7.49□□□□□ -1.21
LIMCH1-216ENST00000512820 PTAFRP25105 342 aa7.49□□□□□ -1.21
LIMCH1-216ENST00000512820 APLNRP35414 380 aa7.49□□□□□ -1.21
LIMCH1-216ENST00000512820 THBS4P35443 961 aa7.49□□□□□ -1.21
LIMCH1-216ENST00000512820 PTGFRP43088 359 aa7.49□□□□□ -1.21
LIMCH1-216ENST00000512820 RPS11P62280 158 aaKnown RBP eCLIP7.49□□□□□ -1.21
LIMCH1-216ENST00000512820 RPS15P62841 145 aaKnown RBP7.49□□□□□ -1.21
LIMCH1-216ENST00000512820 INSM1Q01101 510 aaPredicted RBP7.49□□□□□ -1.21
LIMCH1-216ENST00000512820 DEFA6Q01524 100 aa7.49□□□□□ -1.21
LIMCH1-216ENST00000512820 LYSMD4Q5XG99 296 aa7.49□□□□□ -1.21
LIMCH1-216ENST00000512820 OR5AP2Q8NGF4 316 aa7.49□□□□□ -1.21
LIMCH1-216ENST00000512820 SP7Q8TDD2 431 aaPredicted RBP7.49□□□□□ -1.21
LIMCH1-216ENST00000512820 NAT6Q93015 286 aa7.49□□□□□ -1.21
LIMCH1-216ENST00000512820 NMES1Q9C002 83 aa7.49□□□□□ -1.21
LIMCH1-216ENST00000512820 A0A1W2PQD3 144 aa7.49□□□□□ -1.21
LIMCH1-216ENST00000512820 C5orf67F2Z3F1 127 aa7.49□□□□□ -1.21
LIMCH1-216ENST00000512820 HSD17B6O14756 317 aa7.49□□□□□ -1.21
LIMCH1-216ENST00000512820 TO15178 435 aa7.49□□□□□ -1.21
LIMCH1-216ENST00000512820 DHHO43323 396 aa7.49□□□□□ -1.21
LIMCH1-216ENST00000512820 GALNSP34059 522 aa7.49□□□□□ -1.21
LIMCH1-216ENST00000512820 HAGHQ16775 308 aa7.49□□□□□ -1.21
LIMCH1-216ENST00000512820 MIDNQ504T8 468 aa7.49□□□□□ -1.21
LIMCH1-216ENST00000512820 HIST2H3PS2Q5TEC6 136 aa7.49□□□□□ -1.21
LIMCH1-216ENST00000512820 AADACL3Q5VUY0 350 aa7.49□□□□□ -1.21
LIMCH1-216ENST00000512820 SKA3Q8IX90 412 aa7.49□□□□□ -1.21
LIMCH1-216ENST00000512820 ZSCAN4Q8NAM6 433 aaPredicted RBP7.49□□□□□ -1.21
LIMCH1-216ENST00000512820 ZNF784Q8NCA9 323 aaPredicted RBP7.49□□□□□ -1.21
LIMCH1-216ENST00000512820 PP6455Q8WZ26 134 aa7.49□□□□□ -1.21
LIMCH1-216ENST00000512820 RBMXL1Q96E39 390 aaKnown RBP7.49□□□□□ -1.21
LIMCH1-216ENST00000512820 ANKRD10Q9NXR5 420 aa7.49□□□□□ -1.21
LIMCH1-216ENST00000512820 DNAJB11Q9UBS4 358 aa7.49□□□□□ -1.21
LIMCH1-216ENST00000512820 AK3Q9UIJ7 227 aa7.49□□□□□ -1.21
LIMCH1-216ENST00000512820 IGKV1D-42A0A075B6H8 117 aa7.49□□□□□ -1.21
LIMCH1-216ENST00000512820 ZNF724A8MTY0 619 aa7.49□□□□□ -1.21
LIMCH1-216ENST00000512820 KCNAB3O43448 404 aa7.49□□□□□ -1.21
LIMCH1-216ENST00000512820 PNPP00491 289 aa7.49□□□□□ -1.21
LIMCH1-216ENST00000512820 HPNP05981 417 aa7.49□□□□□ -1.21
LIMCH1-216ENST00000512820 HLA-DOBP13765 273 aa7.49□□□□□ -1.21
LIMCH1-216ENST00000512820 SNRPEP62304 92 aaKnown RBP7.49□□□□□ -1.21
LIMCH1-216ENST00000512820 CPT1CQ8TCG5 803 aa7.49□□□□□ -1.21
LIMCH1-216ENST00000512820 SGK3Q96BR1 496 aa7.49□□□□□ -1.21
LIMCH1-216ENST00000512820 ZNF426Q9BUY5 554 aa7.49□□□□□ -1.21
LIMCH1-216ENST00000512820 SHARPINQ9H0F6 387 aa7.49□□□□□ -1.21
LIMCH1-216ENST00000512820 GFOD1Q9NXC2 390 aa7.49□□□□□ -1.21
LIMCH1-216ENST00000512820 HDGFL3Q9Y3E1 203 aa7.49□□□□□ -1.21
LIMCH1-216ENST00000512820 ALPK2Q86TB3 2170 aa7.49□□□□□ -1.21
LIMCH1-216ENST00000512820 OR2M5A3KFT3 312 aa7.48□□□□□ -1.21
LIMCH1-216ENST00000512820 SPRY1O43609 319 aaPredicted RBP7.48□□□□□ -1.21
LIMCH1-216ENST00000512820 NRASP01111 189 aa7.48□□□□□ -1.21
LIMCH1-216ENST00000512820 HOXD4P09016 255 aaPredicted RBP7.48□□□□□ -1.21
LIMCH1-216ENST00000512820 DVL1P1P54792 670 aaPredicted RBP7.48□□□□□ -1.21
LIMCH1-216ENST00000512820 GUK1Q16774 197 aa7.48□□□□□ -1.21
LIMCH1-216ENST00000512820 ZFP62Q8NB50 900 aaPredicted RBP7.48□□□□□ -1.21
LIMCH1-216ENST00000512820 RGP1Q92546 391 aaPredicted RBP7.48□□□□□ -1.21
LIMCH1-216ENST00000512820 PIK3IP1Q96FE7 263 aa7.48□□□□□ -1.21
LIMCH1-216ENST00000512820 PIPOXQ9P0Z9 390 aa7.48□□□□□ -1.21
LIMCH1-216ENST00000512820 HPP00738 406 aa7.48□□□□□ -1.21
LIMCH1-216ENST00000512820 CTSBP07858 339 aa7.48□□□□□ -1.21
LIMCH1-216ENST00000512820 GLB1P16278 677 aa7.48□□□□□ -1.21
LIMCH1-216ENST00000512820 MICBQ29980 383 aa7.48□□□□□ -1.21
LIMCH1-216ENST00000512820 MOGAT2Q3SYC2 334 aa7.48□□□□□ -1.21
LIMCH1-216ENST00000512820 ABHD17BQ5VST6 288 aa7.48□□□□□ -1.21
LIMCH1-216ENST00000512820 REEP6Q96HR9 211 aa7.48□□□□□ -1.21
LIMCH1-216ENST00000512820 ENY2Q9NPA8 101 aa7.48□□□□□ -1.21
LIMCH1-216ENST00000512820 FAM74A7A6NL05 159 aa7.48□□□□□ -1.21
LIMCH1-216ENST00000512820 METTL12A8MUP2 240 aa7.48□□□□□ -1.21
LIMCH1-216ENST00000512820 TSTD3H0UI37 97 aa7.48□□□□□ -1.21
LIMCH1-216ENST00000512820 PPP1R2P9O14990 202 aa7.48□□□□□ -1.21
LIMCH1-216ENST00000512820 FAM157BP0CG42 384 aa7.48□□□□□ -1.21
LIMCH1-216ENST00000512820 GSK3AP49840 483 aa7.48□□□□□ -1.21
LIMCH1-216ENST00000512820 FAM74A3Q4VXF1 159 aa7.48□□□□□ -1.21
LIMCH1-216ENST00000512820 SHEQ5VZ18 495 aa7.48□□□□□ -1.21
LIMCH1-216ENST00000512820 C6orf201Q7Z4U5 140 aa7.48□□□□□ -1.21
LIMCH1-216ENST00000512820 RPS19BP1Q86WX3 136 aaKnown RBP7.48□□□□□ -1.21
LIMCH1-216ENST00000512820 SLC26A10Q8NG04 563 aa7.48□□□□□ -1.21
LIMCH1-216ENST00000512820 MCHR2Q969V1 340 aa7.48□□□□□ -1.21
LIMCH1-216ENST00000512820 SAT2Q96F10 170 aaPredicted RBP7.48□□□□□ -1.21
LIMCH1-216ENST00000512820 STRADBQ9C0K7 418 aa7.48□□□□□ -1.21
LIMCH1-216ENST00000512820 FBXL17Q9UF56 701 aa7.48□□□□□ -1.21
LIMCH1-216ENST00000512820 MCTS1Q9ULC4 181 aaKnown RBP7.48□□□□□ -1.21
LIMCH1-216ENST00000512820 IFI6P09912 130 aa7.48□□□□□ -1.21
LIMCH1-216ENST00000512820 RAB1AP62820 205 aa7.48□□□□□ -1.21
LIMCH1-216ENST00000512820 HNF4GQ14541 408 aa7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms