RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 MPC1Q9Y5U8 109 aa15.5■□□□□ 0.07
CCDC88B-206ENST00000473405 GNGT2O14610 69 aa15.49■□□□□ 0.07
CCDC88B-206ENST00000473405 CST4P01036 141 aa15.49■□□□□ 0.07
CCDC88B-206ENST00000473405 PRKACGP22612 351 aa15.49■□□□□ 0.07
CCDC88B-206ENST00000473405 PRDX4Q13162 271 aa15.49■□□□□ 0.07
CCDC88B-206ENST00000473405 CDONQ4KMG0 1287 aa15.49■□□□□ 0.07
CCDC88B-206ENST00000473405 FIP1L1Q6UN15 594 aaKnown RBP15.49■□□□□ 0.07
CCDC88B-206ENST00000473405 HIST2H2ABQ8IUE6 130 aaPredicted RBP15.49■□□□□ 0.07
CCDC88B-206ENST00000473405 FTMTQ8N4E7 242 aa15.49■□□□□ 0.07
CCDC88B-206ENST00000473405 OR5P3Q8WZ94 311 aa15.49■□□□□ 0.07
CCDC88B-206ENST00000473405 FAM71F1Q96KD3 344 aaPredicted RBP15.49■□□□□ 0.07
CCDC88B-206ENST00000473405 PKP2Q99959 881 aa15.49■□□□□ 0.07
CCDC88B-206ENST00000473405 MICU1Q9BPX6 476 aa15.49■□□□□ 0.07
CCDC88B-206ENST00000473405 RTL8AQ9BWD3 113 aa15.49■□□□□ 0.07
CCDC88B-206ENST00000473405 WDR13Q9H1Z4 485 aa15.49■□□□□ 0.07
CCDC88B-206ENST00000473405 C1RLQ9NZP8 487 aa15.49■□□□□ 0.07
CCDC88B-206ENST00000473405 LRP12Q9Y561 859 aa15.49■□□□□ 0.07
CCDC88B-206ENST00000473405 KPTNQ9Y664 436 aa15.49■□□□□ 0.07
CCDC88B-206ENST00000473405 POMT1Q9Y6A1 747 aa15.49■□□□□ 0.07
CCDC88B-206ENST00000473405 WNK1Q9H4A3 2382 aa15.49■□□□□ 0.07
CCDC88B-206ENST00000473405 A0A0U1RQK1 487 aa15.48■□□□□ 0.07
CCDC88B-206ENST00000473405 ANXA2P2A6NMY6 339 aa15.48■□□□□ 0.07
CCDC88B-206ENST00000473405 ZNF850A8MQ14 1090 aa15.48■□□□□ 0.07
CCDC88B-206ENST00000473405 E2F6O75461 281 aa15.48■□□□□ 0.07
CCDC88B-206ENST00000473405 HMGN1P05114 100 aa15.48■□□□□ 0.07
CCDC88B-206ENST00000473405 SELLP14151 372 aa15.48■□□□□ 0.07
CCDC88B-206ENST00000473405 HOXB6P17509 224 aaKnown RBP15.48■□□□□ 0.07
CCDC88B-206ENST00000473405 ALOX5APP20292 161 aa15.48■□□□□ 0.07
CCDC88B-206ENST00000473405 IKZF1Q13422 519 aa15.48■□□□□ 0.07
CCDC88B-206ENST00000473405 SNCBQ16143 134 aa15.48■□□□□ 0.07
CCDC88B-206ENST00000473405 FAM76BQ5HYJ3 339 aa15.48■□□□□ 0.07
CCDC88B-206ENST00000473405 SLC35D3Q5M8T2 416 aa15.48■□□□□ 0.07
CCDC88B-206ENST00000473405 TMEM236Q5W0B7 351 aa15.48■□□□□ 0.07
CCDC88B-206ENST00000473405 VMO1Q7Z5L0 202 aa15.48■□□□□ 0.07
CCDC88B-206ENST00000473405 PDZD9Q8IXQ8 264 aa15.48■□□□□ 0.07
CCDC88B-206ENST00000473405 PIP4P2Q8N4L2 257 aa15.48■□□□□ 0.07
CCDC88B-206ENST00000473405 SSMEM1Q8WWF3 244 aa15.48■□□□□ 0.07
CCDC88B-206ENST00000473405 WFDC12Q8WWY7 111 aa15.48■□□□□ 0.07
CCDC88B-206ENST00000473405 RPL3LQ92901 407 aaKnown RBP15.48■□□□□ 0.07
CCDC88B-206ENST00000473405 CNTD2Q9H8S5 307 aa15.48■□□□□ 0.07
CCDC88B-206ENST00000473405 ZNF556Q9HAH1 456 aa15.48■□□□□ 0.07
CCDC88B-206ENST00000473405 SLC25A19Q9HC21 320 aa15.48■□□□□ 0.07
CCDC88B-206ENST00000473405 HAO2Q9NYQ3 351 aa15.48■□□□□ 0.07
CCDC88B-206ENST00000473405 ZNF391Q9UJN7 358 aa15.48■□□□□ 0.07
CCDC88B-206ENST00000473405 TCRBV3S1A0A5B6 114 aa15.47■□□□□ 0.07
CCDC88B-206ENST00000473405 TMEM210A6NLX4 147 aa15.47■□□□□ 0.07
CCDC88B-206ENST00000473405 TFF1P04155 84 aa15.47■□□□□ 0.07
CCDC88B-206ENST00000473405 DCTDP32321 178 aa15.47■□□□□ 0.07
CCDC88B-206ENST00000473405 TGM4P49221 684 aa15.47■□□□□ 0.07
CCDC88B-206ENST00000473405 HCCSP53701 268 aa15.47■□□□□ 0.07
CCDC88B-206ENST00000473405 RAG2P55895 527 aa15.47■□□□□ 0.07
CCDC88B-206ENST00000473405 FLOT2Q14254 428 aa15.47■□□□□ 0.07
CCDC88B-206ENST00000473405 ATPAF1Q5TC12 328 aaPredicted RBP15.47■□□□□ 0.07
CCDC88B-206ENST00000473405 SLC36A1Q7Z2H8 476 aa15.47■□□□□ 0.07
CCDC88B-206ENST00000473405 LDLRAD3Q86YD5 345 aa15.47■□□□□ 0.07
CCDC88B-206ENST00000473405 SCCPDHQ8NBX0 429 aa15.47■□□□□ 0.07
CCDC88B-206ENST00000473405 OR5T2Q8NGG2 359 aa15.47■□□□□ 0.07
CCDC88B-206ENST00000473405 OR10Z1Q8NGY1 313 aa15.47■□□□□ 0.07
CCDC88B-206ENST00000473405 RAB3IPQ96QF0 476 aaPredicted RBP15.47■□□□□ 0.07
CCDC88B-206ENST00000473405 NIPAL2Q9H841 368 aa15.47■□□□□ 0.07
CCDC88B-206ENST00000473405 ABCB9Q9NP78 766 aa15.47■□□□□ 0.07
CCDC88B-206ENST00000473405 FAM206AQ9NX38 181 aa15.47■□□□□ 0.07
CCDC88B-206ENST00000473405 ONECUT1Q9UBC0 465 aa15.47■□□□□ 0.07
CCDC88B-206ENST00000473405 DNAJB9Q9UBS3 223 aa15.47■□□□□ 0.07
CCDC88B-206ENST00000473405 A0A1B0GVI7 797 aa15.46■□□□□ 0.07
CCDC88B-206ENST00000473405 PRR32B1ATL7 298 aa15.46■□□□□ 0.07
CCDC88B-206ENST00000473405 FKBP6O75344 327 aa15.46■□□□□ 0.07
CCDC88B-206ENST00000473405 NDUFA7O95182 113 aa15.46■□□□□ 0.07
CCDC88B-206ENST00000473405 IGHV4-59P01825 116 aa15.46■□□□□ 0.07
CCDC88B-206ENST00000473405 ANXA8P13928 327 aa15.46■□□□□ 0.07
CCDC88B-206ENST00000473405 GMFBP60983 142 aa15.46■□□□□ 0.07
CCDC88B-206ENST00000473405 RPS7P62081 194 aaKnown RBP15.46■□□□□ 0.07
CCDC88B-206ENST00000473405 CBX1P83916 185 aa15.46■□□□□ 0.07
CCDC88B-206ENST00000473405 SRSF4Q08170 494 aaKnown RBP15.46■□□□□ 0.07
CCDC88B-206ENST00000473405 APOFQ13790 326 aa15.46■□□□□ 0.07
CCDC88B-206ENST00000473405 KRT74Q7RTS7 529 aa15.46■□□□□ 0.07
CCDC88B-206ENST00000473405 SPATA24Q86W54 205 aa15.46■□□□□ 0.07
CCDC88B-206ENST00000473405 KIR3DL3Q8N743 410 aa15.46■□□□□ 0.07
CCDC88B-206ENST00000473405 PAPD5Q8NDF8 572 aaKnown RBP15.46■□□□□ 0.07
CCDC88B-206ENST00000473405 OR4F5Q8NH21 305 aa15.46■□□□□ 0.07
CCDC88B-206ENST00000473405 GAFA1Q96PS6 74 aa15.46■□□□□ 0.07
CCDC88B-206ENST00000473405 DCTN5Q9BTE1 182 aa15.46■□□□□ 0.07
CCDC88B-206ENST00000473405 SNTG1Q9NSN8 517 aa15.46■□□□□ 0.07
CCDC88B-206ENST00000473405 LAMP5Q9UJQ1 280 aa15.46■□□□□ 0.07
CCDC88B-206ENST00000473405 CCDC182A6NF36 153 aa15.45■□□□□ 0.06
CCDC88B-206ENST00000473405 GPR37O15354 613 aa15.45■□□□□ 0.06
CCDC88B-206ENST00000473405 AKR7A2O43488 359 aa15.45■□□□□ 0.06
CCDC88B-206ENST00000473405 NDUFB3O43676 98 aa15.45■□□□□ 0.06
CCDC88B-206ENST00000473405 IER3P46695 156 aa15.45■□□□□ 0.06
CCDC88B-206ENST00000473405 TREML4Q6UXN2 200 aa15.45■□□□□ 0.06
CCDC88B-206ENST00000473405 ZNF788Q6ZQV5 615 aa15.45■□□□□ 0.06
CCDC88B-206ENST00000473405 TRPM8Q7Z2W7 1104 aa15.45■□□□□ 0.06
CCDC88B-206ENST00000473405 KRT77Q7Z794 578 aa15.45■□□□□ 0.06
CCDC88B-206ENST00000473405 ZDHHC23Q8IYP9 409 aa15.45■□□□□ 0.06
CCDC88B-206ENST00000473405 Q8N7P7 452 aa15.45■□□□□ 0.06
CCDC88B-206ENST00000473405 ANGPTL6Q8NI99 470 aa15.45■□□□□ 0.06
CCDC88B-206ENST00000473405 C8orf46Q8TAG6 207 aa15.45■□□□□ 0.06
CCDC88B-206ENST00000473405 PIGCQ92535 297 aa15.45■□□□□ 0.06
CCDC88B-206ENST00000473405 SLC7A6OSQ96CW6 309 aaPredicted RBP15.45■□□□□ 0.06
CCDC88B-206ENST00000473405 RNF170Q96K19 258 aa15.45■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms