RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 SRSF4Q08170 494 aaKnown RBP16.29■□□□□ 0.2
COL9A3-210ENST00000472880 TIGD4Q8IY51 512 aa16.29■□□□□ 0.2
COL9A3-210ENST00000472880 GALNT4Q8N4A0 578 aa16.29■□□□□ 0.2
COL9A3-210ENST00000472880 GIPC3Q8TF64 312 aa16.29■□□□□ 0.2
COL9A3-210ENST00000472880 ITPKCQ96DU7 683 aa16.29■□□□□ 0.2
COL9A3-210ENST00000472880 FEVQ99581 238 aa16.29■□□□□ 0.2
COL9A3-210ENST00000472880 TLNRD1Q9H1K6 362 aa16.29■□□□□ 0.2
COL9A3-210ENST00000472880 PPP1R3EQ9H7J1 279 aa16.29■□□□□ 0.2
COL9A3-210ENST00000472880 ABCB9Q9NP78 766 aa16.29■□□□□ 0.2
COL9A3-210ENST00000472880 ZNF319Q9P2F9 582 aa16.29■□□□□ 0.2
COL9A3-210ENST00000472880 FAM96BQ9Y3D0 163 aa16.29■□□□□ 0.2
COL9A3-210ENST00000472880 MPC1Q9Y5U8 109 aa16.29■□□□□ 0.2
COL9A3-210ENST00000472880 ARRDC5A6NEK1 342 aa16.28■□□□□ 0.2
COL9A3-210ENST00000472880 NKX6-3A6NJ46 265 aa16.28■□□□□ 0.2
COL9A3-210ENST00000472880 PRR23D1E9PI22 279 aaPredicted RBP16.28■□□□□ 0.2
COL9A3-210ENST00000472880 GPR37O15354 613 aa16.28■□□□□ 0.2
COL9A3-210ENST00000472880 PRR23D2P0DMB1 279 aaPredicted RBP16.28■□□□□ 0.2
COL9A3-210ENST00000472880 GMFBP60983 142 aa16.28■□□□□ 0.2
COL9A3-210ENST00000472880 DEFA6Q01524 100 aa16.28■□□□□ 0.2
COL9A3-210ENST00000472880 IKZF1Q13422 519 aa16.28■□□□□ 0.2
COL9A3-210ENST00000472880 LRRC10Q5BKY1 277 aa16.28■□□□□ 0.2
COL9A3-210ENST00000472880 LY6G5BQ8NDX9 201 aa16.28■□□□□ 0.2
COL9A3-210ENST00000472880 SEH1LQ96EE3 360 aa16.28■□□□□ 0.2
COL9A3-210ENST00000472880 DPAGT1Q9H3H5 408 aa16.28■□□□□ 0.2
COL9A3-210ENST00000472880 DNAJB11Q9UBS4 358 aa16.28■□□□□ 0.2
COL9A3-210ENST00000472880 CAB39Q9Y376 341 aaPredicted RBP16.28■□□□□ 0.2
COL9A3-210ENST00000472880 TMEM210A6NLX4 147 aa16.27■□□□□ 0.2
COL9A3-210ENST00000472880 CST1P01037 141 aa16.27■□□□□ 0.2
COL9A3-210ENST00000472880 POU1F1P28069 291 aa16.27■□□□□ 0.2
COL9A3-210ENST00000472880 IER3P46695 156 aa16.27■□□□□ 0.2
COL9A3-210ENST00000472880 PRDX4Q13162 271 aa16.27■□□□□ 0.2
COL9A3-210ENST00000472880 STUMQ69YW2 141 aa16.27■□□□□ 0.2
COL9A3-210ENST00000472880 PLBD1Q6P4A8 553 aa16.27■□□□□ 0.2
COL9A3-210ENST00000472880 KCTD8Q6ZWB6 473 aa16.27■□□□□ 0.2
COL9A3-210ENST00000472880 PIP4P2Q8N4L2 257 aa16.27■□□□□ 0.2
COL9A3-210ENST00000472880 ZNF454Q8N9F8 522 aa16.27■□□□□ 0.2
COL9A3-210ENST00000472880 OR10Z1Q8NGY1 313 aa16.27■□□□□ 0.2
COL9A3-210ENST00000472880 OTOSQ8NHW6 89 aa16.27■□□□□ 0.2
COL9A3-210ENST00000472880 THEM6Q8WUY1 208 aa16.27■□□□□ 0.2
COL9A3-210ENST00000472880 LRTOMTQ8WZ04 291 aa16.27■□□□□ 0.2
COL9A3-210ENST00000472880 H1FXQ92522 213 aaKnown RBP16.27■□□□□ 0.2
COL9A3-210ENST00000472880 DMRTB1Q96MA1 342 aa16.27■□□□□ 0.2
COL9A3-210ENST00000472880 CITED1Q99966 193 aa16.27■□□□□ 0.2
COL9A3-210ENST00000472880 PDP1Q9P0J1 537 aaPredicted RBP16.27■□□□□ 0.2
COL9A3-210ENST00000472880 RNF114Q9Y508 228 aa16.27■□□□□ 0.2
COL9A3-210ENST00000472880 TRRAPQ9Y4A5 3859 aa16.27■□□□□ 0.19
COL9A3-210ENST00000472880 AQP12BA6NM10 295 aa16.26■□□□□ 0.19
COL9A3-210ENST00000472880 ZNF850A8MQ14 1090 aa16.26■□□□□ 0.19
COL9A3-210ENST00000472880 M0QZ24 198 aa16.26■□□□□ 0.19
COL9A3-210ENST00000472880 SELENOFO60613 162 aa16.26■□□□□ 0.19
COL9A3-210ENST00000472880 DNAJC8O75937 253 aaPredicted RBP16.26■□□□□ 0.19
COL9A3-210ENST00000472880 PSMA6P60900 246 aaKnown RBP16.26■□□□□ 0.19
COL9A3-210ENST00000472880 GUCA2AQ02747 115 aa16.26■□□□□ 0.19
COL9A3-210ENST00000472880 BNIP1Q12981 228 aa16.26■□□□□ 0.19
COL9A3-210ENST00000472880 MIDNQ504T8 468 aa16.26■□□□□ 0.19
COL9A3-210ENST00000472880 METAP1DQ6UB28 335 aaPredicted RBP16.26■□□□□ 0.19
COL9A3-210ENST00000472880 GDPGP1Q6ZNW5 385 aa16.26■□□□□ 0.19
COL9A3-210ENST00000472880 AQP12AQ8IXF9 295 aa16.26■□□□□ 0.19
COL9A3-210ENST00000472880 ADGRG5Q8IZF4 528 aa16.26■□□□□ 0.19
COL9A3-210ENST00000472880 OR5T2Q8NGG2 359 aa16.26■□□□□ 0.19
COL9A3-210ENST00000472880 RPL3LQ92901 407 aaKnown RBP16.26■□□□□ 0.19
COL9A3-210ENST00000472880 PKP2Q99959 881 aa16.26■□□□□ 0.19
COL9A3-210ENST00000472880 DCTN5Q9BTE1 182 aa16.26■□□□□ 0.19
COL9A3-210ENST00000472880 CHID1Q9BWS9 393 aa16.26■□□□□ 0.19
COL9A3-210ENST00000472880 DNTTIP1Q9H147 329 aa16.26■□□□□ 0.19
COL9A3-210ENST00000472880 SIRT7Q9NRC8 400 aa16.26■□□□□ 0.19
COL9A3-210ENST00000472880 SNTG1Q9NSN8 517 aa16.26■□□□□ 0.19
COL9A3-210ENST00000472880 HAO2Q9NYQ3 351 aa16.26■□□□□ 0.19
COL9A3-210ENST00000472880 BTBD17A6NE02 478 aa16.25■□□□□ 0.19
COL9A3-210ENST00000472880 GNGT2O14610 69 aa16.25■□□□□ 0.19
COL9A3-210ENST00000472880 TIMM23O14925 209 aa16.25■□□□□ 0.19
COL9A3-210ENST00000472880 PRODHO43272 600 aa16.25■□□□□ 0.19
COL9A3-210ENST00000472880 CST4P01036 141 aa16.25■□□□□ 0.19
COL9A3-210ENST00000472880 FBP1P09467 338 aa16.25■□□□□ 0.19
COL9A3-210ENST00000472880 SELLP14151 372 aa16.25■□□□□ 0.19
COL9A3-210ENST00000472880 EEF1B2P24534 225 aaKnown RBP16.25■□□□□ 0.19
COL9A3-210ENST00000472880 ACKR3P25106 362 aa16.25■□□□□ 0.19
COL9A3-210ENST00000472880 TGM4P49221 684 aa16.25■□□□□ 0.19
COL9A3-210ENST00000472880 GINS1Q14691 196 aa16.25■□□□□ 0.19
COL9A3-210ENST00000472880 PDLIM3Q53GG5 364 aaPredicted RBP16.25■□□□□ 0.19
COL9A3-210ENST00000472880 ZDHHC23Q8IYP9 409 aa16.25■□□□□ 0.19
COL9A3-210ENST00000472880 NPRL2Q8WTW4 380 aa16.25■□□□□ 0.19
COL9A3-210ENST00000472880 OR5P3Q8WZ94 311 aa16.25■□□□□ 0.19
COL9A3-210ENST00000472880 PIGCQ92535 297 aa16.25■□□□□ 0.19
COL9A3-210ENST00000472880 RAB3IPQ96QF0 476 aaPredicted RBP16.25■□□□□ 0.19
COL9A3-210ENST00000472880 WDR13Q9H1Z4 485 aa16.25■□□□□ 0.19
COL9A3-210ENST00000472880 SEMA6AQ9H2E6 1030 aa16.25■□□□□ 0.19
COL9A3-210ENST00000472880 ZNF391Q9UJN7 358 aa16.25■□□□□ 0.19
COL9A3-210ENST00000472880 HMGN1P05114 100 aa16.24■□□□□ 0.19
COL9A3-210ENST00000472880 RPS7P62081 194 aaKnown RBP16.24■□□□□ 0.19
COL9A3-210ENST00000472880 FLOT2Q14254 428 aa16.24■□□□□ 0.19
COL9A3-210ENST00000472880 OCLNQ16625 522 aa16.24■□□□□ 0.19
COL9A3-210ENST00000472880 ATPAF1Q5TC12 328 aaPredicted RBP16.24■□□□□ 0.19
COL9A3-210ENST00000472880 OR8B12Q8NGG6 310 aa16.24■□□□□ 0.19
COL9A3-210ENST00000472880 LINC01006Q8NI28 216 aa16.24■□□□□ 0.19
COL9A3-210ENST00000472880 C8orf46Q8TAG6 207 aa16.24■□□□□ 0.19
COL9A3-210ENST00000472880 FAM81AQ8TBF8 368 aa16.24■□□□□ 0.19
COL9A3-210ENST00000472880 CANT1Q8WVQ1 401 aa16.24■□□□□ 0.19
COL9A3-210ENST00000472880 RNF170Q96K19 258 aa16.24■□□□□ 0.19
COL9A3-210ENST00000472880 HIST1H2AAQ96QV6 131 aa16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms